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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00173 phylogeny
for nucleotide alignment


 
(((((((((((((((((((NIA3_MAIZE/522-595,NIA1_ORYSA/543-616),(((Q39966_9POAL/5-78,(((Q39993_9POAL/5-78,Q39971_HORCH/5-78),Q39976_9POAL/5-78),Q39984_9POAL/5-78)),Q41318_SECCE/5-78),Q38791_9POAL/2-75)),(Q9XGW5_MAIZE/540-613,Q43265_MAIZE/131-204)),(Q41613_TRIMO/5-78,(Q39992_HORSP/5-78,(NIA2_HORVU/537-610,NIA1_HORVU/540-613)))),NIA7_HORVU/517-590),((((NIA2_PHAVU/515-588,NIA_LOTJA/523-596),((NIA_BETVE/530-603,(NIA_SPIOL/553-626,((P92922_AGRGI/125-198,P92921_AGRGI/115-188),P92920_AGRGI/257-330))),(((((NIA1_ARATH/547-620,NIA2_BRANA/541-614),NIA1_BRANA/541-614),NIA2_ARATH/544-617),(((Q43042_PETHY/543-616,NIA_PETHY/537-610),((O24390_SOLTU/538-611,O04926_SOLTU/538-611),NIA_LYCES/538-611)),((NIA1_TOBAC/533-606,Q41201_NICPL/9-74),NIA2_TOBAC/533-606))),Q9FUC2_RICCO/536-609))),(NIA_CUCMA/545-618,(NIA1_PHAVU/517-590,(((NIA1_SOYBN/515-588,Q9SYR0_SOYBN/519-592),NIA2_SOYBN/519-592),O48930_SOYBN/505-578)))),NIA_CICIN/536-609)),((((NIA_CHLVU/218-291,Q42497_CHLVU/504-577),NIA_PHYIN/539-612),(NIA_VOLCA/499-572,Q9SDY3_CHLRE/510-583)),(((Q00303_BOTCI/540-612,((NIA_LEPMC/538-611,(((Q00284_ASPPA/516-589,Q12561_ASPOR/516-589),Q01696_PENCH/513-586),NIA_EMENI/514-587)),O00101_PHANO/537-610)),(((O13486_METAN/539-612,(Q92237_GIBFU/550-623,NIA_FUSOX/548-621)),NIA_BEABA/537-610),NIA_NEUCR/619-692)),(((Q9P942_HANAN/515-588,NIA_PICAN/504-578),NIA_USTMA/516-592),Q9UVH6_HEBCY/545-618)))),((Q9VUZ3_DROME/4-80,(((O76336_HELAM/5-79,CYB5_MUSDO/8-82),CYB5_DROME/8-82),CYB5_MORAP/6-80)),(((Q9BT35_HUMAN/22-96,CYM5_HUMAN/22-96),(CYM5_RAT/22-96,((Q9D1M6_MOUSE/22-96,Q9CQX2_MOUSE/22-96),Q9D8R3_MOUSE/22-96))),(((((CYB5_RAT/10-84,CYB5_MOUSE/10-84),P70116_MESAU/11-85),(((CYB5_BOVIN/10-84,CYB5_PIG/10-84),CYB5_HUMAN/10-84),CYB5_RABIT/10-84)),CYB5_CHICK/16-90),((((((O96099_DICDI/14-89,Q9Y1W0_DICDI/15-90),(Q9M5B0_PETHY/6-80,Q9ZSP7_PETHY/6-80)),O01816_CAEEL/6-83),(((CYB52_ARATH/7-81,((CYB5_CUSRE/6-80,CYB5_ORYSA/8-82),((Q9ZWT2_ARATH/7-81,(CYB5_BOROF/4-78,CYB5S_TOBAC/7-81)),O24651_OLEEU/4-78))),((CYB51_ARATH/7-81,CYB5_BRAOB/7-81),O48618_OLEEU/7-81)),(Q9FDW8_ARATH/7-81,Q9ZNV4_ARATH/4-78))),((CYB5_RHIST/5-79,CYB5_YEAST/4-78),CYB52_SCHPO/5-79)),((Q9GV21_POLMI/13-87,Q9GV20_CIOSA/9-83),Q93315_CAEEL/6-80)))))),(((CYB51_SCHPO/5-79,Q9VJC0_DROME/43-117),((((Q9ZNW2_PHYPA/104-176,Q9LEN0_CERPU/62-134),Q9LEM9_CERPU/99-171),(((Q98SW7_ONCMY/30-105,(Q9DEX6_CYPCA/20-95,FADS_BRARE/20-95)),((Q9JJE7_MOUSE/26-101,Q9Y5Q0_HUMAN/22-97),(Q9Z122_RAT/20-95,O95864_HUMAN/20-95))),((Q9NYX1_HUMAN/19-94,(Q9NRP8_HUMAN/19-94,O60427_HUMAN/19-94)),Q9EPV4_RAT/21-97))),(((((Q9FR82_BOROF/7-80,Q43469_HELAN/18-91),(Q9SAU5_BOROF/8-81,O04353_BOROF/8-81)),Q9ZTY9_RICCO/7-80),(Q9ZRP8_BRANA/9-82,Q9ZRP7_ARATH/9-82)),Q9ZTU8_WHEAT/29-102))),(CYB5_ECTVA/9-87,((((YMW3_YEAST/124-200,(O74875_SCHPO/71-145,YDAA_SCHPO/73-147)),(((Q99P29_MOUSE/22-96,Q9EPZ4_RAT/22-96),Q9UHI9_HUMAN/22-96),(Q9LXD1_ARATH/128-202,Q9FXX6_ARATH/192-266))),(Q9XWF1_CAEEL/56-130,Q9V8U2_DROME/89-163)),FAD5_MORAP/8-82)))),(((Q20976_CAEEL/11-88,Q17091_ASCSU/35-112),O22704_ARATH/48-121),SCS7_YEAST/11-90)),(((O13510_RHOGR/88-163,(CYB2_HANAN/82-157,(CYB2_YEAST/90-165,Q9Y857_KLULA/89-163))),(Q9VQY5_DROME/10-118,Q9BLW3_LEIMA/595-669)),((CHS6_USTMA/139-268,O94192_PARBR/806-933),(((O13281_EMENI/960-1093,P97995_ASPFU/600-733),Q9P8W4_BLUGR/948-1081),O93809_MAGGR/945-1078)))),(((Q9UVY3_MORAP/15-89,(Q9HEY4_MORIS/15-89,Q9HEY1_MORAP/15-89)),Q9UVV3_MORAP/15-89),((((O94192_PARBR/934-1022,(Q9GYB0_LEIMA/4-90,(((O13281_EMENI/1094-1192,P97995_ASPFU/734-832),O93809_MAGGR/1079-1178),Q9P8W4_BLUGR/1082-1181))),CHS6_USTMA/269-361),(((CHS5_USTMA/402-484,(CHS4_NEUCR/372-457,CHS4_MAGGR/407-492)),O93787_RHIOL/303-384),CHS1_CRYNV/246-329)),(((SUOX_HUMAN/27-104,SUOX_RAT/27-104),Q9XTQ8_CAEEL/81-157),SUOX_DROME/110-186)))),(((((ACO1_AJECA/351-427,Q12619_AJECA/351-427),(O80331_CYAME/380-457,(P79077_CRYCU/374-449,P79078_CRYCU/357-432))),(((O94036_CANAL/389-464,P79049_PICAN/351-427),(ACO1_YEAST/411-487,Q9HFB2_SACKL/381-457)),ACO1_SCHPO/360-433)),(O13378_MUCRO/342-419,((((Q9UVW5_MORAP/343-420,O94214_MORAP/343-420),O94215_MORAP/344-421),O94747_MORAP/343-420),Q9C135_9ZYGO/215-292))),(((Q9N9B5_LEIMA/12-82,(Q9V4L7_DROME/2-77,Q9XVS0_CAEEL/4-78)),((((Q9VJI2_DROME/26-100,CYB5R_DROME/26-100),CYB5R_DROVI/26-100),Q9VJI1_DROME/29-105),P71799_MYCTU/2-89)),Q9HDG8_MUCRO/21-95))),Q9XTB7_CAEEL/3-134),(((O15093_HUMAN/17-91,O95714_HUMAN/1209-1283),O88473_MOUSE/1210-1284),Q9VR91_DROME/1290-1364)),(O26575_METTH/3-75,(Q9AMN3_CLOAB/61-134,Q97TF9_CLOAB/65-138))),(((MSBP1_ARATH/74-171,((Q9FVZ7_ORYSA/73-170,Q9FVZ9_ORYSA/120-217),SBP2_ARATH/70-167)),SBP3_ARATH/2-99),(Q9VXM4_DROME/82-181,(((Q9N0T7_BOVIN/62-161,PGRC1_MOUSE/71-170),Q98TJ7_PLAFE/38-109),(YL81_SCHPO/42-145,DAP1_YEAST/46-145))))),(Q9TY05_CAEEL/64-161,(Q9VJY5_DROME/72-171,(Q9W376_DROME/63-162,Q9XXA7_CAEEL/100-197)))),SPUF_MOUSE/45-143,SPUF_HUMAN/46-144);
(((((((((((((((((((NIA3_MAIZE/522-595:0.02823,NIA1_ORYSA/543-616:0.01866):0.00461,(((Q39966_9POAL/5-78:0.01081,(((Q39993_9POAL/5-78:0.00921,Q39971_HORCH/5-78:0.00000):0.00460,Q39976_9POAL/5-78:0.00460):0.00924,Q39984_9POAL/5-78:0.00000):0.00772):0.00912,Q41318_SECCE/5-78:0.05105):0.02051,Q38791_9POAL/2-75:0.01400):0.00925):0.00537,(Q9XGW5_MAIZE/540-613:0.00000,Q43265_MAIZE/131-204:0.01388):0.02267):0.01693,(Q41613_TRIMO/5-78:0.00449,(Q39992_HORSP/5-78:0.00460,(NIA2_HORVU/537-610:0.00000,NIA1_HORVU/540-613:0.00000):0.00000):0.00936):0.03439):0.02866,NIA7_HORVU/517-590:0.05650):0.06447,((((NIA2_PHAVU/515-588:0.07024,NIA_LOTJA/523-596:0.08129):0.03633,((NIA_BETVE/530-603:0.05279,(NIA_SPIOL/553-626:0.18158,((P92922_AGRGI/125-198:0.01888,P92921_AGRGI/115-188:0.16685):0.02548,P92920_AGRGI/257-330:0.01981):0.05901):0.08582):0.03124,(((((NIA1_ARATH/547-620:0.09596,NIA2_BRANA/541-614:0.03817):0.03646,NIA1_BRANA/541-614:0.03939):0.05995,NIA2_ARATH/544-617:0.14594):0.06528,(((Q43042_PETHY/543-616:0.00000,NIA_PETHY/537-610:0.00000):0.07126,((O24390_SOLTU/538-611:0.00458,O04926_SOLTU/538-611:0.00000):0.00000,NIA_LYCES/538-611:0.01844):0.06407):0.03334,((NIA1_TOBAC/533-606:0.03142,Q41201_NICPL/9-74:0.00518):0.00609,NIA2_TOBAC/533-606:0.00000):0.01169):0.09498):0.08416,Q9FUC2_RICCO/536-609:0.11473):0.07477):0.01935):0.03652,(NIA_CUCMA/545-618:0.07963,(NIA1_PHAVU/517-590:0.09137,(((NIA1_SOYBN/515-588:0.00922,Q9SYR0_SOYBN/519-592:0.00000):0.00000,NIA2_SOYBN/519-592:0.00000):0.00000,O48930_SOYBN/505-578:0.00000):0.04383):0.06852):0.01275):0.01974,NIA_CICIN/536-609:0.14776):0.05910):0.16761,((((NIA_CHLVU/218-291:0.00459,Q42497_CHLVU/504-577:0.00000):0.17059,NIA_PHYIN/539-612:0.44102):0.04893,(NIA_VOLCA/499-572:0.12396,Q9SDY3_CHLRE/510-583:0.09262):0.09630):0.05107,(((Q00303_BOTCI/540-612:0.21963,((NIA_LEPMC/538-611:0.15353,(((Q00284_ASPPA/516-589:0.04215,Q12561_ASPOR/516-589:0.00000):0.15623,Q01696_PENCH/513-586:0.20914):0.06289,NIA_EMENI/514-587:0.12053):0.15353):0.05636,O00101_PHANO/537-610:0.14110):0.06659):0.07183,(((O13486_METAN/539-612:0.27961,(Q92237_GIBFU/550-623:0.01404,NIA_FUSOX/548-621:0.02337):0.09934):0.03737,NIA_BEABA/537-610:0.19238):0.06776,NIA_NEUCR/619-692:0.16262):0.02133):0.12530,(((Q9P942_HANAN/515-588:0.28541,NIA_PICAN/504-578:0.26829):0.05011,NIA_USTMA/516-592:0.28509):0.13488,Q9UVH6_HEBCY/545-618:0.28543):0.07525):0.15578):0.04806):0.14710,((Q9VUZ3_DROME/4-80:0.39672,(((O76336_HELAM/5-79:0.35758,CYB5_MUSDO/8-82:0.17508):0.04202,CYB5_DROME/8-82:0.09668):0.06472,CYB5_MORAP/6-80:0.35544):0.02951):0.06449,(((Q9BT35_HUMAN/22-96:0.00000,CYM5_HUMAN/22-96:0.00000):0.09599,(CYM5_RAT/22-96:0.01280,((Q9D1M6_MOUSE/22-96:0.00000,Q9CQX2_MOUSE/22-96:0.00000):0.00000,Q9D8R3_MOUSE/22-96:0.00907):0.03396):0.03609):0.18684,(((((CYB5_RAT/10-84:0.01530,CYB5_MOUSE/10-84:0.01670):0.03720,P70116_MESAU/11-85:0.05348):0.02908,(((CYB5_BOVIN/10-84:0.01826,CYB5_PIG/10-84:0.01840):0.05835,CYB5_HUMAN/10-84:0.03061):0.02207,CYB5_RABIT/10-84:0.08404):0.01599):0.08599,CYB5_CHICK/16-90:0.12094):0.17710,((((((O96099_DICDI/14-89:0.12114,Q9Y1W0_DICDI/15-90:0.12860):0.35182,(Q9M5B0_PETHY/6-80:0.00906,Q9ZSP7_PETHY/6-80:0.00000):0.21788):0.08932,O01816_CAEEL/6-83:0.26154):0.06998,(((CYB52_ARATH/7-81:0.17435,((CYB5_CUSRE/6-80:0.09712,CYB5_ORYSA/8-82:0.24447):0.05079,((Q9ZWT2_ARATH/7-81:0.15671,(CYB5_BOROF/4-78:0.09826,CYB5S_TOBAC/7-81:0.12312):0.02978):0.03823,O24651_OLEEU/4-78:0.06467):0.03326):0.07293):0.07424,((CYB51_ARATH/7-81:0.03252,CYB5_BRAOB/7-81:0.07813):0.06223,O48618_OLEEU/7-81:0.20038):0.04778):0.08010,(Q9FDW8_ARATH/7-81:0.18268,Q9ZNV4_ARATH/4-78:0.30578):0.07010):0.07619):0.03570,((CYB5_RHIST/5-79:0.19155,CYB5_YEAST/4-78:0.35019):0.06792,CYB52_SCHPO/5-79:0.29778):0.06095):0.06235,((Q9GV21_POLMI/13-87:0.21515,Q9GV20_CIOSA/9-83:0.16546):0.06675,Q93315_CAEEL/6-80:0.28754):0.05885):0.09458):0.06032):0.02711):0.09887):0.04181,(((CYB51_SCHPO/5-79:0.44574,Q9VJC0_DROME/43-117:0.27437):0.05404,((((Q9ZNW2_PHYPA/104-176:0.24352,Q9LEN0_CERPU/62-134:0.16958):0.04974,Q9LEM9_CERPU/99-171:0.14334):0.26180,(((Q98SW7_ONCMY/30-105:0.08564,(Q9DEX6_CYPCA/20-95:0.08159,FADS_BRARE/20-95:0.01508):0.23651):0.11076,((Q9JJE7_MOUSE/26-101:0.04987,Q9Y5Q0_HUMAN/22-97:0.04757):0.17270,(Q9Z122_RAT/20-95:0.06477,O95864_HUMAN/20-95:0.06989):0.06263):0.05074):0.07421,((Q9NYX1_HUMAN/19-94:0.00000,(Q9NRP8_HUMAN/19-94:0.00000,O60427_HUMAN/19-94:0.00000):0.00000):0.05280,Q9EPV4_RAT/21-97:0.11293):0.20724):0.20440):0.06444,(((((Q9FR82_BOROF/7-80:0.19141,Q43469_HELAN/18-91:0.20408):0.04252,(Q9SAU5_BOROF/8-81:0.00000,O04353_BOROF/8-81:0.00000):0.20953):0.06559,Q9ZTY9_RICCO/7-80:0.09060):0.13309,(Q9ZRP8_BRANA/9-82:0.13616,Q9ZRP7_ARATH/9-82:0.10187):0.07905):0.18188,Q9ZTU8_WHEAT/29-102:0.34733):0.17469):0.08979):0.03243,(CYB5_ECTVA/9-87:0.46519,((((YMW3_YEAST/124-200:0.55351,(O74875_SCHPO/71-145:0.21154,YDAA_SCHPO/73-147:0.17109):0.17200):0.10902,(((Q99P29_MOUSE/22-96:0.03224,Q9EPZ4_RAT/22-96:0.03458):0.02355,Q9UHI9_HUMAN/22-96:0.06196):0.18201,(Q9LXD1_ARATH/128-202:0.00000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