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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00169 phylogeny
for nucleotide alignment


 
(((((((((((((((DMF1_SCHPO/802-901,(YHT1_YEAST/184-294,Q06833_YEAST/114-266)),O23559_ARATH/656-764),BEM3_YEAST/635-741),((BEM2_YEAST/1832-1948,((MIG10_CAEEL/345-454,STE5_YEAST/400-512),(GRB7_MOUSE/229-341,GRBA_HUMAN/291-399))),((((Q03868_YEAST/1030-1229,(ASK10_YEAST/482-720,YIK5_YEAST/469-581)),Q06321_YEAST/239-336),(OPY1_YEAST/216-318,(SIP3_YEAST/310-423,(O13690_SCHPO/682-804,YHV5_YEAST/309-421)))),Q17777_CAEEL/241-343))),O00886_DICDI/1008-1093),(((Q21025_CAEEL/833-940,Q20151_CAEEL/20-135),GAP_CAEEL/324-438),(PLD1_HUMAN/220-328,Q17637_CAEEL/395-504))),(Q06412_YEAST/716-877,YOTB_CAEEL/36-131)),(LBC_HUMAN/312-413,ARHG2_MOUSE/474-572)),(((((((TRIO_HUMAN/2099-2212,O02134_CAEEL/257-375),DBL_HUMAN/705-809),TRIO_HUMAN/1421-1532),(ARHG7_HUMAN/480-578,ARHG6_HUMAN/450-548)),ARHG8_HUMAN/387-501),UNC89_CAEEL/349-451),(ECT2_MOUSE/492-617,GNRP_RAT/457-582))),((((FGD1_HUMAN/591-689,Q18372_CAEEL/510-613),(VAV2_MOUSE/401-502,VAV_RAT/403-504)),((Q99434_HUMAN/214-332,ARHG5_HUMAN/313-424),ABR_HUMAN/302-459)),(SOS2_MOUSE/407-509,SOS_DROME/480-587))),((((Q62985_RAT/247-376,Q20280_CAEEL/8-133),(((Q63693_RAT/17-124,Q29517_RABIT/10-119),((PLCG1_HUMAN/33-142,Q24284_DROME/15-132),Q62688_RAT/115-224)),DYN1_RAT/520-625)),(SIF1_DROME/1658-1785,TIAM_MOUSE/1261-1395)),Q90917_CHICK/348-441)),((((Q63629_RAT/255-358,(Q24469_DROME/26-130,(Q17942_CAEEL/16-118,AKT2_MOUSE/6-108))),((3BP2_MOUSE/27-130,(Q61374_MOUSE/541-643,(GNRP_RAT/23-129,P70392_MOUSE/23-133))),(Q90917_CHICK/154-249,(O08724_RAT/33-133,Q28224_CERAE/13-115)))),(((O15268_HUMAN/108-210,MYO10_BOVIN/1207-1304),(Q63312_RAT/672-774,(Q24452_DROME/4-113,GABI_HUMAN/6-116))),(((RHG25_HUMAN/40-144,PLEK_HUMAN/5-101),PLEK_HUMAN/245-347),((((((SNTB1_HUMAN/323-433,SNT1_CAEEL/228-340),(SNTA1_RABIT/294-401,Q91492_TORCA/276-383)),SHK2_SCHPO/24-125),KPCM_HUMAN/423-541),(Q98935_CHICK/74-177,CENB1_HUMAN/266-360)),(((CYH1_HUMAN/261-377,GRP1_CAEEL/262-380),(RIP3_MOUSE/387-482,P90525_DICDI/30-140)),((Q24240_DROME/1069-1192,(NUM1_YEAST/2574-2683,APSA_EMENI/1394-1504)),(((((((PKHC1_HUMAN/381-476,UN112_CAEEL/406-507),Q23419_CAEEL/18-114),(Q20653_CAEEL/302-399,(Q9ZM07_HELPJ/436-566,FGD1_HUMAN/822-921))),BOI2_YEAST/769-887),CRAC_DICDI/22-121),((Q18420_CAEEL/249-346,(Q94477_DICDI/175-282,KRAC_DICDI/6-99)),SKM1_YEAST/4-118)),((RGA2_SCHPO/720-836,((YB35_SCHPO/255-349,OSH2_YEAST/290-386),((O01686_CAEEL/1-93,Q93569_CAEEL/7-101),OSBP1_RABIT/91-183))),YAUA_SCHPO/527-632)))))))),(((ARBK1_HUMAN/559-652,GPRK1_DROME/558-657),P91678_DROME/205-307),(((GAP1_DROME/763-862,RASA2_RAT/604-704),((BTK_HUMAN/4-133,((ITK_MOUSE/5-117,TEC_MOUSE/5-111),BMX_HUMAN/5-111)),((BUD4_YEAST/1303-1413,INT1_CANAL/1528-1636),(YLE5_CAEEL/387-505,GAP1_CAEEL/412-507)))),KDGD_MESAU/60-152)))),((((((P92199_CAEEL/951-1040,ROCK1_HUMAN/1119-1212),DOK1_HUMAN/4-119),CTRO_MOUSE/1470-1589),((Q06315_YEAST/91-221,YN18_YEAST/76-204),YDH4_SCHPO/1044-1158)),(KIF1A_MOUSE/1581-1678,UN104_CAEEL/1461-1558)),(Q15673_HUMAN/378-490,(O15059_HUMAN/465-576,(SIF1_DROME/849-955,TIAM_MOUSE/434-547))))),(SPTCB_DROME/2148-2259,(O02425_CAEEL/3675-3782,Q23980_DROME/1145-1252))),SPTB2_HUMAN/2198-2307,SPTB2_MOUSE/2199-2304);
(((((((((((((((DMF1_SCHPO/802-901:0.81568,(YHT1_YEAST/184-294:0.84432,Q06833_YEAST/114-266:0.58839):0.13995):0.10481,O23559_ARATH/656-764:0.86871):0.08111,BEM3_YEAST/635-741:0.52314):0.05759,((BEM2_YEAST/1832-1948:1.00347,((MIG10_CAEEL/345-454:0.31554,STE5_YEAST/400-512:1.04497):0.07262,(GRB7_MOUSE/229-341:0.41071,GRBA_HUMAN/291-399:0.11261):0.41787):0.18062):0.17406,((((Q03868_YEAST/1030-1229:0.81266,(ASK10_YEAST/482-720:0.47088,YIK5_YEAST/469-581:0.40432):0.30126):0.11427,Q06321_YEAST/239-336:0.59227):0.20392,(OPY1_YEAST/216-318:0.50915,(SIP3_YEAST/310-423:0.31552,(O13690_SCHPO/682-804:0.85918,YHV5_YEAST/309-421:0.27683):0.30845):0.36396):0.08524):0.07192,Q17777_CAEEL/241-343:0.85539):0.05654):0.04679):0.06802,O00886_DICDI/1008-1093:0.57058):0.06143,(((Q21025_CAEEL/833-940:0.89332,Q20151_CAEEL/20-135:0.33743):0.12650,GAP_CAEEL/324-438:0.81708):0.23536,(PLD1_HUMAN/220-328:0.31322,Q17637_CAEEL/395-504:0.63959):0.52173):0.17035):0.12983,(Q06412_YEAST/716-877:0.73300,YOTB_CAEEL/36-131:0.36622):0.09536):0.21057,(LBC_HUMAN/312-413:0.21069,ARHG2_MOUSE/474-572:0.38495):0.36879):0.20798,(((((((TRIO_HUMAN/2099-2212:0.31593,O02134_CAEEL/257-375:0.78102):0.22137,DBL_HUMAN/705-809:0.50334):0.14634,TRIO_HUMAN/1421-1532:0.32560):0.10784,(ARHG7_HUMAN/480-578:0.29897,ARHG6_HUMAN/450-548:0.17971):0.51041):0.10486,ARHG8_HUMAN/387-501:0.72715):0.05476,UNC89_CAEEL/349-451:0.79679):0.08043,(ECT2_MOUSE/492-617:0.83998,GNRP_RAT/457-582:0.44356):0.22054):0.08569):0.10112,((((FGD1_HUMAN/591-689:0.33587,Q18372_CAEEL/510-613:0.75024):0.14863,(VAV2_MOUSE/401-502:0.27789,VAV_RAT/403-504:0.27251):0.33310):0.08287,((Q99434_HUMAN/214-332:0.30496,ARHG5_HUMAN/313-424:0.61809):0.20927,ABR_HUMAN/302-459:0.54430):0.22306):0.03432,(SOS2_MOUSE/407-509:0.47834,SOS_DROME/480-587:0.32348):0.27881):0.10590):0.06769,((((Q62985_RAT/247-376:0.68222,Q20280_CAEEL/8-133:0.74331):0.26772,(((Q63693_RAT/17-124:0.51031,Q29517_RABIT/10-119:0.30156):0.09157,((PLCG1_HUMAN/33-142:0.40583,Q24284_DROME/15-132:0.50418):0.15276,Q62688_RAT/115-224:0.41763):0.18824):0.20009,DYN1_RAT/520-625:0.57716):0.11911):0.00000,(SIF1_DROME/1658-1785:0.49920,TIAM_MOUSE/1261-1395:0.52386):0.45095):0.01757,Q90917_CHICK/348-441:0.93575):0.04231):0.06172,((((Q63629_RAT/255-358:0.52932,(Q24469_DROME/26-130:0.22908,(Q17942_CAEEL/16-118:0.50684,AKT2_MOUSE/6-108:0.20230):0.19193):0.31716):0.06964,((3BP2_MOUSE/27-130:0.54775,(Q61374_MOUSE/541-643:0.66843,(GNRP_RAT/23-129:0.32815,P70392_MOUSE/23-133:0.20843):0.23599):0.14992):0.00000,(Q90917_CHICK/154-249:0.71981,(O08724_RAT/33-133:0.39072,Q28224_CERAE/13-115:0.19248):0.23835):0.08314):0.06088):0.07832,(((O15268_HUMAN/108-210:0.55809,MYO10_BOVIN/1207-1304:0.33413):0.08506,(Q63312_RAT/672-774:0.42702,(Q24452_DROME/4-113:0.32547,GABI_HUMAN/6-116:0.50933):0.12871):0.12985):0.13957,(((RHG25_HUMAN/40-144:0.37176,PLEK_HUMAN/5-101:0.52284):0.06363,PLEK_HUMAN/245-347:0.41654):0.11687,((((((SNTB1_HUMAN/323-433:0.23735,SNT1_CAEEL/228-340:0.59008):0.06811,(SNTA1_RABIT/294-401:0.28086,Q91492_TORCA/276-383:0.21446):0.12716):0.49541,SHK2_SCHPO/24-125:0.77968):0.12889,KPCM_HUMAN/423-541:0.77547):0.07377,(Q98935_CHICK/74-177:0.76687,CENB1_HUMAN/266-360:0.27730):0.32406):0.04824,(((CYH1_HUMAN/261-377:0.17797,GRP1_CAEEL/262-380:0.50026):0.10849,(RIP3_MOUSE/387-482:0.55769,P90525_DICDI/30-140:0.37382):0.09738):0.07392,((Q24240_DROME/1069-1192:0.38578,(NUM1_YEAST/2574-2683:0.62869,APSA_EMENI/1394-1504:0.16091):0.70443):0.30093,(((((((PKHC1_HUMAN/381-476:0.48088,UN112_CAEEL/406-507:0.31066):0.11353,Q23419_CAEEL/18-114:0.67900):0.24818,(Q20653_CAEEL/302-399:0.51212,(Q9ZM07_HELPJ/436-566:1.12255,FGD1_HUMAN/822-921:0.14979):0.39183):0.17358):0.11855,BOI2_YEAST/769-887:0.51998):0.06837,CRAC_DICDI/22-121:0.74389):0.09724,((Q18420_CAEEL/249-346:0.68701,(Q94477_DICDI/175-282:0.79850,KRAC_DICDI/6-99:0.19228):0.16053):0.11977,SKM1_YEAST/4-118:0.58080):0.07803):0.11641,((RGA2_SCHPO/720-836:0.56971,((YB35_SCHPO/255-349:0.31097,OSH2_YEAST/290-386:0.56571):0.12857,((O01686_CAEEL/1-93:0.44800,Q93569_CAEEL/7-101:0.49259):0.23512,OSBP1_RABIT/91-183:0.43298):0.14267):0.18000):0.20718,YAUA_SCHPO/527-632:0.62119):0.09893):0.07796):0.11452):0.11593):0.05501):0.06737):0.03682):0.02349,(((ARBK1_HUMAN/559-652:0.22129,GPRK1_DROME/558-657:0.96289):0.32080,P91678_DROME/205-307:0.56050):0.11611,(((GAP1_DROME/763-862:0.44961,RASA2_RAT/604-704:0.34891):0.24010,((BTK_HUMAN/4-133:0.27425,((ITK_MOUSE/5-117:0.33856,TEC_MOUSE/5-111:0.26223):0.15523,BMX_HUMAN/5-111:0.17330):0.11663):0.30978,((BUD4_YEAST/1303-1413:0.50898,INT1_CANAL/1528-1636:0.51992):0.26699,(YLE5_CAEEL/387-505:0.75084,GAP1_CAEEL/412-507:0.41403):0.19306):0.11010):0.12348):0.10755,KDGD_MESAU/60-152:0.66524):0.05908):0.06226):0.03773):0.15374,((((((P92199_CAEEL/951-1040:0.51899,ROCK1_HUMAN/1119-1212:0.64523):0.22192,DOK1_HUMAN/4-119:0.65372):0.04186,CTRO_MOUSE/1470-1589:0.54607):0.08424,((Q06315_YEAST/91-221:0.40377,YN18_YEAST/76-204:0.07093):0.58136,YDH4_SCHPO/1044-1158:0.49358):0.34536):0.17250,(KIF1A_MOUSE/1581-1678:0.18090,UN104_CAEEL/1461-1558:0.50793):0.36872):0.06060,(Q15673_HUMAN/378-490:0.33302,(O15059_HUMAN/465-576:0.81957,(SIF1_DROME/849-955:0.31933,TIAM_MOUSE/434-547:0.25630):0.11543):0.07347):0.07991):0.08319):0.27505,(SPTCB_DROME/2148-2259:0.50224,(O02425_CAEEL/3675-3782:0.49380,Q23980_DROME/1145-1252:0.19231):0.24566):0.04715):0.26541,SPTB2_HUMAN/2198-2307:0.05671,SPTB2_MOUSE/2199-2304:0.01548);