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 pan•dit |
PANDIT Protein and Associated NucleotideDomains with Inferred Trees |
| (View raw data for PF00158 - Sigma54_activat) |
| Sigma-54 interaction domain |
| (Pfam reference: accession no. PF00158) |
| (Interpro reference: accession no. IPR002078) |
| sequences | alignment | phylogeny |
| amino acids (Pfam-A seed alignment) |
291 sequences @ 284 aa (ave. pairwise identity: 0.46) (view Jalview alignment from Pfam) |
New Hampshire format (total tree length: 108.29) |
| nucleotides (available for above) |
289 sequences @ 852 bp (ave. pairwise identity: 0.51) |
New Hampshire format (total tree length: 94.53) |
|
amino acids, restricted set (corresp. to available nt seqs) |
289 sequences @ 284 aa (ave. pairwise identity: 0.46) |
New Hampshire format (total tree length: 107.59) |