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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00134 phylogeny
for nucleotide alignment


 
((((((((((((((((((Q39067_ARATH/185-310,CG2B_ARATH/168-293),O48790_ARATH/133-258),(CG21_SOYBN/197-322,(O04389_CATRO/186-311,CG21_ANTMA/197-322))),(Q40794_PETCR/187-312,(Q9XGI2_LYCES/121-246,(Q39880_SOYBN/186-311,P93102_CHERU/192-317)))),(P93646_MAIZE/228-354,(Q41733_MAIZE/189-315,Q41734_MAIZE/155-280))),(Q9SA32_ARATH/268-374,Q9ZRG1_PEA/7-133)),((Q9SSZ5_ORYSA/157-283,Q41731_MAIZE/173-299),((Q39068_ARATH/174-300,(CG2B_MEDSA/73-199,Q9XGI1_LYCES/180-306)),Q9SFW6_ARATH/167-294))),((P92162_BOMMO/260-387,((CG2B_CHLVR/137-262,(((O96434_PARTE/82-210,O97482_PARTE/85-212),CG2B_DICDI/188-314),((((CG24_YEAST/210-336,CG23_YEAST/171-297),O93911_CANAL/234-360),(((CG23_SCHPO/206-332,(O93916_PNECA/176-302,CG22_SCHPO/139-265)),(CG21_SCHPO/166-292,CG21_EMENI/211-337)),((O14332_SCHPO/145-271,CG21_CANAL/208-334),((CGS6_YEAST/123-252,CGS5_YEAST/165-294),(CG22_YEAST/232-357,CG21_YEAST/212-337))))),((CG12_YEAST/43-195,CG1_COLGL/38-166),((CG11_CANAL/48-176,(CG12_CANAL/44-172,CG13_YEAST/79-206)),CG1P_SCHPO/99-227))))),(CG2B_SPISO/172-297,CG2B_PATVU/155-280))),(((CCNA2_CAEEL/215-341,Q9V3F4_DROME/260-387),(CG2B_CAEEL/81-206,O45926_CAEEL/34-159)),((((CCNB2_HUMAN/137-262,CCNB2_XENLA/134-259),CCNB2_CHICK/141-266),(((CCNB1_MOUSE/170-295,O93228_RANJA/112-237),CCNB1_XENLA/139-264),O93231_BUFJA/24-149)),CG2B_ARBPU/145-272)))),(((Q25123_HELRO/112-238,CCNA2_DROME/206-332),(((CCNA2_SPISO/166-292,CCNA2_PATVU/174-300),O62573_SPHGR/213-339),(((Q9PW42_CARAU/140-266,CCNA1_HUMAN/214-340),CCNA2_MOUSE/171-297),CCNA2_CHLVR/168-294))),((Q96226_ADICA/268-395,((O04399_TOBAC/107-236,(Q39877_SOYBN/83-212,(O04388_CATRO/107-236,CG2A_DAUCA/77-206))),(Q41732_MAIZE/188-315,Q39331_BRANA/160-287))),(Q39878_SOYBN/207-334,(Q39073_ARATH/175-302,Q9XGI0_MEDSA/224-351))))),(((CGB3_CAEEL/114-240,CCNB3_DROME/308-433),CCNB3_CHICK/149-274),Q25168_HELTR/256-380)),((CG2F_MOUSE/272-406,((P89883_MHV68/19-144,((O40946_HHV8/20-147,Q9WRM3_9GAMA/20-147),(Q9YTJ4_9GAMA/30-156,CGH2_SHV21/22-148))),(Q9U2M5_CAEEL/72-201,(Q24158_DROME/126-255,((CGD2_MOUSE/24-151,CGD3_HUMAN/26-153),CGD1_RAT/26-153))))),(CG1E_DROME/330-459,((CG1E_HEMPU/126-253,(CGE2_MOUSE/112-239,(((CGE1_CHICK/112-239,CGE1_MOUSE/113-240),CGE3_XENLA/114-241),Q9PVT7_CARAU/117-244))),(Q9U7P9_9CILI/433-564,CG1E_CAEEL/232-360))))),((UNG2_HUMAN/64-189,(O43008_SCHPO/56-183,((CG12_CANAL/186-317,(CG12_YEAST/244-380,CCL1_YEAST/118-250)),(CG13_YEAST/284-427,CGM2_SCHPO/69-204)))),((Q9V9W0_DROME/239-369,((((Q9SN11_ARATH/59-186,(CGD3_ARATH/62-187,((O82678_CHERU/70-197,(Q9S7H9_LYCES/61-190,Q9SNV0_ANTMA/71-201)),((O82136_PEA/72-205,(Q9SMD4_LYCES/51-182,Q9SNV1_ANTMA/59-187)),Q9SXN7_TOBAC/59-188)))),(((Q9SNV2_ANTMA/45-174,CGD1_ARATH/50-182),((CGD2_ARATH/65-197,(Q9ZRX9_TOBAC/64-196,Q9XFR7_ARATH/45-178)),P93103_CHERU/77-208)),Q9SZF6_ARATH/47-171)),Q9ZR04_ARATH/26-154),(O56309_9RETR/3-120,(CYCI_MOUSE/16-143,CGG2_HUMAN/20-154)))),(Q9VZP3_DROME/42-165,(Q9VKF0_DROME/205-327,((O80513_ARATH/22-148,O65065_PICMA/77-204),(CG16_YEAST/19-152,(CG17_YEAST/18-146,Q12477_YEAST/19-146)))))))),Q9VE72_DROME/6-144),((UME3_YEAST/45-176,CG1C_ORYSA/4-144),O76513_DROME/43-156)),CYCK_MOUSE/25-156),(Q9SXC3_ARATH/35-175,(O49474_ARATH/28-170,Q9SN70_ARATH/32-166))),CCT_DROME/42-176),CCNT1_HUMAN/13-149,CCNT2_HUMAN/10-148);
((((((((((((((((((Q39067_ARATH/185-310:0.16396,CG2B_ARATH/168-293:0.24920):0.07271,O48790_ARATH/133-258:0.25528):0.04941,(CG21_SOYBN/197-322:0.15155,(O04389_CATRO/186-311:0.17284,CG21_ANTMA/197-322:0.13616):0.06971):0.05086):0.03092,(Q40794_PETCR/187-312:0.19783,(Q9XGI2_LYCES/121-246:0.18620,(Q39880_SOYBN/186-311:0.15846,P93102_CHERU/192-317:0.15127):0.04250):0.05227):0.03088):0.06619,(P93646_MAIZE/228-354:0.24656,(Q41733_MAIZE/189-315:0.28027,Q41734_MAIZE/155-280:0.12891):0.14121):0.06129):0.05208,(Q9SA32_ARATH/268-374:0.21303,Q9ZRG1_PEA/7-133:0.17867):0.32527):0.04824,((Q9SSZ5_ORYSA/157-283:0.18870,Q41731_MAIZE/173-299:0.20985):0.04263,((Q39068_ARATH/174-300:0.21456,(CG2B_MEDSA/73-199:0.16069,Q9XGI1_LYCES/180-306:0.17600):0.03460):0.07976,Q9SFW6_ARATH/167-294:0.17295):0.04866):0.14958):0.09444,((P92162_BOMMO/260-387:0.35039,((CG2B_CHLVR/137-262:0.33766,(((O96434_PARTE/82-210:0.25160,O97482_PARTE/85-212:0.23850):0.14422,CG2B_DICDI/188-314:0.33812):0.07724,((((CG24_YEAST/210-336:0.22766,CG23_YEAST/171-297:0.26870):0.09845,O93911_CANAL/234-360:0.26935):0.04489,(((CG23_SCHPO/206-332:0.18790,(O93916_PNECA/176-302:0.20643,CG22_SCHPO/139-265:0.29670):0.06409):0.10836,(CG21_SCHPO/166-292:0.39277,CG21_EMENI/211-337:0.23256):0.12492):0.08763,((O14332_SCHPO/145-271:0.49071,CG21_CANAL/208-334:0.25958):0.09426,((CGS6_YEAST/123-252:0.23464,CGS5_YEAST/165-294:0.29946):0.18614,(CG22_YEAST/232-357:0.16338,CG21_YEAST/212-337:0.19748):0.18577):0.08267):0.07852):0.07374):0.05225,((CG12_YEAST/43-195:0.54682,CG1_COLGL/38-166:0.63109):0.13873,((CG11_CANAL/48-176:0.29275,(CG12_CANAL/44-172:0.25388,CG13_YEAST/79-206:0.55869):0.12712):0.09427,CG1P_SCHPO/99-227:0.46706):0.11148):0.23056):0.07919):0.05811):0.07437,(CG2B_SPISO/172-297:0.13706,CG2B_PATVU/155-280:0.23206):0.10275):0.07689):0.09526,(((CCNA2_CAEEL/215-341:0.51524,Q9V3F4_DROME/260-387:0.25426):0.10451,(CG2B_CAEEL/81-206:0.07482,O45926_CAEEL/34-159:0.16053):0.28208):0.09422,((((CCNB2_HUMAN/137-262:0.17795,CCNB2_XENLA/134-259:0.18027):0.04749,CCNB2_CHICK/141-266:0.14033):0.11405,(((CCNB1_MOUSE/170-295:0.17811,O93228_RANJA/112-237:0.23719):0.06522,CCNB1_XENLA/139-264:0.17371):0.06863,O93231_BUFJA/24-149:0.12198):0.09629):0.04298,CG2B_ARBPU/145-272:0.27685):0.05710):0.06838):0.06427):0.07986,(((Q25123_HELRO/112-238:0.24668,CCNA2_DROME/206-332:0.28215):0.07891,(((CCNA2_SPISO/166-292:0.18352,CCNA2_PATVU/174-300:0.16981):0.07398,O62573_SPHGR/213-339:0.20587):0.06592,(((Q9PW42_CARAU/140-266:0.20813,CCNA1_HUMAN/214-340:0.14815):0.04409,CCNA2_MOUSE/171-297:0.18832):0.04416,CCNA2_CHLVR/168-294:0.30313):0.04902):0.07242):0.06743,((Q96226_ADICA/268-395:0.22352,((O04399_TOBAC/107-236:0.21615,(Q39877_SOYBN/83-212:0.20610,(O04388_CATRO/107-236:0.10544,CG2A_DAUCA/77-206:0.22472):0.06087):0.07967):0.09673,(Q41732_MAIZE/188-315:0.19101,Q39331_BRANA/160-287:0.14625):0.09479):0.03824):0.03948,(Q39878_SOYBN/207-334:0.12276,(Q39073_ARATH/175-302:0.20746,Q9XGI0_MEDSA/224-351:0.25505):0.03175):0.11436):0.24085):0.10666):0.10932,(((CGB3_CAEEL/114-240:0.37918,CCNB3_DROME/308-433:0.26568):0.10318,CCNB3_CHICK/149-274:0.17503):0.05128,Q25168_HELTR/256-380:0.30921):0.11417):0.05391,((CG2F_MOUSE/272-406:0.72189,((P89883_MHV68/19-144:0.75883,((O40946_HHV8/20-147:0.38585,Q9WRM3_9GAMA/20-147:0.48513):0.11283,(Q9YTJ4_9GAMA/30-156:0.12203,CGH2_SHV21/22-148:0.14745):0.47131):0.05954):0.19485,(Q9U2M5_CAEEL/72-201:0.58284,(Q24158_DROME/126-255:0.42802,((CGD2_MOUSE/24-151:0.14529,CGD3_HUMAN/26-153:0.18065):0.05888,CGD1_RAT/26-153:0.16528):0.14833):0.09996):0.08884):0.04913):0.11265,(CG1E_DROME/330-459:0.27121,((CG1E_HEMPU/126-253:0.28725,(CGE2_MOUSE/112-239:0.28037,(((CGE1_CHICK/112-239:0.10577,CGE1_MOUSE/113-240:0.17877):0.05406,CGE3_XENLA/114-241:0.12850):0.03546,Q9PVT7_CARAU/117-244:0.20153):0.04043):0.07597):0.13700,(Q9U7P9_9CILI/433-564:0.62770,CG1E_CAEEL/232-360:0.39350):0.16620):0.08507):0.16708):0.06009):0.08587,((UNG2_HUMAN/64-189:0.80549,(O43008_SCHPO/56-183:0.73505,((CG12_CANAL/186-317:0.92868,(CG12_YEAST/244-380:0.64984,CCL1_YEAST/118-250:1.70476):0.41269):0.06264,(CG13_YEAST/284-427:1.05028,CGM2_SCHPO/69-204:1.09810):0.23128):0.26957):0.16892):0.09956,((Q9V9W0_DROME/239-369:0.67043,((((Q9SN11_ARATH/59-186:0.19440,(CGD3_ARATH/62-187:0.19852,((O82678_CHERU/70-197:0.30948,(Q9S7H9_LYCES/61-190:0.15524,Q9SNV0_ANTMA/71-201:0.17894):0.07932):0.05416,((O82136_PEA/72-205:0.15685,(Q9SMD4_LYCES/51-182:0.21698,Q9SNV1_ANTMA/59-187:0.16918):0.06523):0.04741,Q9SXN7_TOBAC/59-188:0.17481):0.04915):0.05137):0.05260):0.17133,(((Q9SNV2_ANTMA/45-174:0.18185,CGD1_ARATH/50-182:0.14354):0.19978,((CGD2_ARATH/65-197:0.19417,(Q9ZRX9_TOBAC/64-196:0.16449,Q9XFR7_ARATH/45-178:0.20824):0.05297):0.11246,P93103_CHERU/77-208:0.14464):0.13666):0.07168,Q9SZF6_ARATH/47-171:0.66594):0.05952):0.11999,Q9ZR04_ARATH/26-154:0.49656):0.42026,(O56309_9RETR/3-120:0.87204,(CYCI_MOUSE/16-143:0.34020,CGG2_HUMAN/20-154:0.55115):0.18476):0.00095):0.22007):0.06877,(Q9VZP3_DROME/42-165:0.56558,(Q9VKF0_DROME/205-327:0.57323,((O80513_ARATH/22-148:0.36651,O65065_PICMA/77-204:0.28964):0.43330,(CG16_YEAST/19-152:0.15578,(CG17_YEAST/18-146:0.18856,Q12477_YEAST/19-146:0.27475):0.36339):0.41102):0.17728):0.19832):0.07148):0.07823):0.06035):0.22074,Q9VE72_DROME/6-144:0.69427):0.08659,((UME3_YEAST/45-176:0.78968,CG1C_ORYSA/4-144:0.58521):0.13583,O76513_DROME/43-156:0.61996):0.10676):0.16179,CYCK_MOUSE/25-156:0.54978):0.15332,(Q9SXC3_ARATH/35-175:0.38867,(O49474_ARATH/28-170:0.27636,Q9SN70_ARATH/32-166:0.20501):0.29026):0.29452):0.20465,CCT_DROME/42-176:0.22606):0.17119,CCNT1_HUMAN/13-149:0.18727,CCNT2_HUMAN/10-148:0.18486);