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PANDIT Protein and Associated NucleotideDomains with Inferred Trees |
PF00134 phylogeny |
| (((((((((((((((((((((((((Q9XGI2_LYCES/121-246,(P93102_CHERU/192-317,(O48790_ARATH/133-258,Q39880_SOYBN/186-311))),((O04389_CATRO/186-311,CG21_ANTMA/197-322),((Q39067_ARATH/185-310,CG2B_ARATH/168-293),CG21_SOYBN/197-322))),Q40794_PETCR/187-312),(Q41733_MAIZE/189-315,Q41734_MAIZE/155-280)),P93646_MAIZE/228-354),(Q9SA32_ARATH/268-374,Q9ZRG1_PEA/7-133)),(((((Q39068_ARATH/174-300,CG2B_MEDSA/73-199),Q9XGI1_LYCES/180-306),Q9SFW6_ARATH/167-294),Q41731_MAIZE/173-299),Q9SSZ5_ORYSA/157-283)),CG2B_DICDI/188-314),(((((Q9V3F4_DROME/260-387,P92162_BOMMO/260-387),(((((CCNB2_HUMAN/137-262,CCNB2_CHICK/141-266),CCNB2_XENLA/134-259),(O93228_RANJA/112-237,((CCNB1_MOUSE/170-295,O93231_BUFJA/24-149),CCNB1_XENLA/139-264))),(CG2B_ASTPE/147-270,CG2B_ARBPU/145-272)),(CG2B_SPISO/172-297,CG2B_PATVU/155-280))),CG2B_CHLVR/137-262),(CG2B_CAEEL/81-206,O45926_CAEEL/34-159)),(O96434_PARTE/82-210,O97482_PARTE/85-212))),((((CG24_YEAST/210-336,CG23_YEAST/171-297),O93911_CANAL/234-360),(((O93916_PNECA/176-302,(CG21_EMENI/211-337,CG23_SCHPO/206-332)),CG22_SCHPO/139-265),(((CG22_YEAST/232-357,CG21_YEAST/212-337),(CGS6_YEAST/123-252,CGS5_YEAST/165-294)),CG21_CANAL/208-334))),(O14332_SCHPO/145-271,CG21_SCHPO/166-292))),(((CGB3_CAEEL/114-240,Q25168_HELTR/256-380),CCNB3_DROME/308-433),CCNB3_CHICK/149-274)),(((((Q25123_HELRO/112-238,CCNA2_DROME/206-332),((CCNA2_SPISO/166-292,CCNA2_PATVU/174-300),(((Q9PW42_CARAU/140-266,CCNA1_HUMAN/214-340),CCNA2_MOUSE/171-297),O62573_SPHGR/213-339))),CCNA2_CHLVR/168-294),(((Q9XGI0_MEDSA/224-351,(Q39073_ARATH/175-302,Q39878_SOYBN/207-334)),(Q96226_ADICA/268-395,(Q41732_MAIZE/188-315,Q39331_BRANA/160-287))),(O04399_TOBAC/107-236,(O04388_CATRO/107-236,(Q39877_SOYBN/83-212,CG2A_DAUCA/77-206))))),((CG1E_CAEEL/232-360,((CG1E_HEMPU/126-253,(CGE2_MOUSE/112-239,((CGE1_CHICK/112-239,CGE1_MOUSE/113-240),(CGE3_XENLA/114-241,Q9PVT7_CARAU/117-244)))),CG1E_DROME/330-459)),CCNA2_CAEEL/215-341))),Q9U7P9_9CILI/433-564),((CG12_YEAST/43-195,(((CG13_YEAST/79-206,CG12_CANAL/44-172),CG11_CANAL/48-176),CG1P_SCHPO/99-227)),CG2F_MOUSE/272-406)),(((Q9WRM3_9GAMA/20-147,(Q9YTJ4_9GAMA/30-156,CGH2_SHV21/22-148)),O40946_HHV8/20-147),((P89883_MHV68/19-144,Q9U2M5_CAEEL/72-201),(Q24158_DROME/126-255,((CGD2_MOUSE/24-151,CGD3_HUMAN/26-153),CGD1_RAT/26-153))))),((O56309_9RETR/3-120,((UNG2_HUMAN/64-189,((CG12_YEAST/244-380,CGM2_SCHPO/69-204),CG13_YEAST/284-427)),(O43008_SCHPO/56-183,(CG12_CANAL/186-317,O76513_DROME/43-156)))),CCL1_YEAST/118-250)),CG1_COLGL/38-166),((Q9V9W0_DROME/239-369,CGG2_HUMAN/20-154),CYCI_MOUSE/16-143)),((Q9SZF6_ARATH/47-171,((Q9SNV2_ANTMA/45-174,CGD1_ARATH/50-182),((P93103_CHERU/77-208,(Q9XFR7_ARATH/45-178,(Q9ZRX9_TOBAC/64-196,CGD2_ARATH/65-197))),(((O82136_PEA/72-205,CGD3_ARATH/62-187),(Q9SMD4_LYCES/51-182,((Q9S7H9_LYCES/61-190,(Q9SNV0_ANTMA/71-201,(Q9SN11_ARATH/59-186,O82678_CHERU/70-197))),Q9SNV1_ANTMA/59-187))),Q9SXN7_TOBAC/59-188)))),Q9ZR04_ARATH/26-154)),(((Q9VKF0_DROME/205-327,(O80513_ARATH/22-148,O65065_PICMA/77-204)),(CG16_YEAST/19-152,(CG17_YEAST/18-146,Q12477_YEAST/19-146))),Q9VZP3_DROME/42-165)),(Q9VE72_DROME/6-144,(CG1C_ORYSA/4-144,UME3_YEAST/45-176))),CYCK_MOUSE/25-156),(Q9SXC3_ARATH/35-175,(O49474_ARATH/28-170,Q9SN70_ARATH/32-166))),CCNT1_HUMAN/13-149),CCT_DROME/42-176,CCNT2_HUMAN/10-148); |
| (((((((((((((((((((((((((Q9XGI2_LYCES/121-246:0.21642,(P93102_CHERU/192-317:0.11881,(O48790_ARATH/133-258:0.24599,Q39880_SOYBN/186-311:0.11306):0.05608):0.03991):0.02795,((O04389_CATRO/186-311:0.10296,CG21_ANTMA/197-322:0.13892):0.06987,((Q39067_ARATH/185-310:0.17793,CG2B_ARATH/168-293:0.20032):0.10789,CG21_SOYBN/197-322:0.11975):0.03196):0.03833):0.04977,Q40794_PETCR/187-312:0.22180):0.03171,(Q41733_MAIZE/189-315:0.29019,Q41734_MAIZE/155-280:0.11944):0.16407):0.09868,P93646_MAIZE/228-354:0.26203):0.06338,(Q9SA32_ARATH/268-374:0.30610,Q9ZRG1_PEA/7-133:0.14390):0.37545):0.16271,(((((Q39068_ARATH/174-300:0.13583,CG2B_MEDSA/73-199:0.14991):0.04598,Q9XGI1_LYCES/180-306:0.16691):0.06751,Q9SFW6_ARATH/167-294:0.19415):0.05828,Q41731_MAIZE/173-299:0.15771):0.03925,Q9SSZ5_ORYSA/157-283:0.10907):0.13419):0.11927,CG2B_DICDI/188-314:0.45707):0.14586,(((((Q9V3F4_DROME/260-387:0.44087,P92162_BOMMO/260-387:0.33365):0.13338,(((((CCNB2_HUMAN/137-262:0.15240,CCNB2_CHICK/141-266:0.11107):0.03751,CCNB2_XENLA/134-259:0.11651):0.16304,(O93228_RANJA/112-237:0.21642,((CCNB1_MOUSE/170-295:0.10916,O93231_BUFJA/24-149:0.14426):0.01671,CCNB1_XENLA/139-264:0.13106):0.06396):0.12274):0.03672,(CG2B_ASTPE/147-270:0.24846,CG2B_ARBPU/145-272:0.17374):0.10349):0.03897,(CG2B_SPISO/172-297:0.12399,CG2B_PATVU/155-280:0.12946):0.10662):0.01529):0.10337,CG2B_CHLVR/137-262:0.34255):0.06720,(CG2B_CAEEL/81-206:0.09492,O45926_CAEEL/34-159:0.22120):0.37533):0.11340,(O96434_PARTE/82-210:0.14194,O97482_PARTE/85-212:0.27422):0.27595):0.00831):0.08502,((((CG24_YEAST/210-336:0.29608,CG23_YEAST/171-297:0.25786):0.10748,O93911_CANAL/234-360:0.29198):0.13904,(((O93916_PNECA/176-302:0.14830,(CG21_EMENI/211-337:0.33407,CG23_SCHPO/206-332:0.10251):0.06434):0.10331,CG22_SCHPO/139-265:0.25295):0.07457,(((CG22_YEAST/232-357:0.14231,CG21_YEAST/212-337:0.12146):0.31857,(CGS6_YEAST/123-252:0.21066,CGS5_YEAST/165-294:0.29395):0.28540):0.07153,CG21_CANAL/208-334:0.37042):0.13231):0.06473):0.05068,(O14332_SCHPO/145-271:0.70560,CG21_SCHPO/166-292:0.35228):0.14612):0.17734):0.02768,(((CGB3_CAEEL/114-240:0.51041,Q25168_HELTR/256-380:0.34272):0.11371,CCNB3_DROME/308-433:0.39537):0.05646,CCNB3_CHICK/149-274:0.27071):0.35292):0.03478,(((((Q25123_HELRO/112-238:0.23948,CCNA2_DROME/206-332:0.23960):0.06677,((CCNA2_SPISO/166-292:0.16153,CCNA2_PATVU/174-300:0.07741):0.03011,(((Q9PW42_CARAU/140-266:0.13637,CCNA1_HUMAN/214-340:0.10624):0.06758,CCNA2_MOUSE/171-297:0.09776):0.06873,O62573_SPHGR/213-339:0.16967):0.02964):0.04365):0.04836,CCNA2_CHLVR/168-294:0.16251):0.15102,(((Q9XGI0_MEDSA/224-351:0.32412,(Q39073_ARATH/175-302:0.22419,Q39878_SOYBN/207-334:0.12038):0.03026):0.09113,(Q96226_ADICA/268-395:0.16185,(Q41732_MAIZE/188-315:0.11209,Q39331_BRANA/160-287:0.11196):0.11063):0.07178):0.03124,(O04399_TOBAC/107-236:0.21305,(O04388_CATRO/107-236:0.06978,(Q39877_SOYBN/83-212:0.22965,CG2A_DAUCA/77-206:0.20360):0.06268):0.12850):0.12459):0.23256):0.14572,((CG1E_CAEEL/232-360:0.63644,((CG1E_HEMPU/126-253:0.31240,(CGE2_MOUSE/112-239:0.28162,((CGE1_CHICK/112-239:0.08101,CGE1_MOUSE/113-240:0.16598):0.03261,(CGE3_XENLA/114-241:0.12650,Q9PVT7_CARAU/117-244:0.14855):0.04635):0.06846):0.14032):0.08073,CG1E_DROME/330-459:0.28394):0.19083):0.18585,CCNA2_CAEEL/215-341:0.68761):0.18514):0.07785):0.18808,Q9U7P9_9CILI/433-564:1.00721):0.02687,((CG12_YEAST/43-195:0.91401,(((CG13_YEAST/79-206:0.68103,CG12_CANAL/44-172:0.35561):0.24375,CG11_CANAL/48-176:0.30048):0.14533,CG1P_SCHPO/99-227:0.48502):0.28465):0.21013,CG2F_MOUSE/272-406:1.39556):0.09051):0.14987,(((Q9WRM3_9GAMA/20-147:0.71130,(Q9YTJ4_9GAMA/30-156:0.11349,CGH2_SHV21/22-148:0.14834):0.46498):0.12051,O40946_HHV8/20-147:0.57420):0.21860,((P89883_MHV68/19-144:1.06614,Q9U2M5_CAEEL/72-201:0.62338):0.34127,(Q24158_DROME/126-255:0.45502,((CGD2_MOUSE/24-151:0.09879,CGD3_HUMAN/26-153:0.24920):0.09320,CGD1_RAT/26-153:0.20409):0.20799):0.17925):0.13186):0.39331):0.09553,((O56309_9RETR/3-120:1.66872,((UNG2_HUMAN/64-189:1.33838,((CG12_YEAST/244-380:2.33856,CGM2_SCHPO/69-204:2.57418):0.27964,CG13_YEAST/284-427:1.97954):0.52535):0.17146,(O43008_SCHPO/56-183:1.01688,(CG12_CANAL/186-317:2.65392,O76513_DROME/43-156:1.38451):0.35344):0.25401):0.18092):0.09811,CCL1_YEAST/118-250:3.86328):0.00000):0.01520,CG1_COLGL/38-166:1.34020):0.17035,((Q9V9W0_DROME/239-369:1.13922,CGG2_HUMAN/20-154:0.58057):0.28719,CYCI_MOUSE/16-143:0.49172):0.38824):0.05457,((Q9SZF6_ARATH/47-171:0.91754,((Q9SNV2_ANTMA/45-174:0.24382,CGD1_ARATH/50-182:0.21538):0.22653,((P93103_CHERU/77-208:0.15846,(Q9XFR7_ARATH/45-178:0.31833,(Q9ZRX9_TOBAC/64-196:0.17964,CGD2_ARATH/65-197:0.27758):0.05889):0.17526):0.14744,(((O82136_PEA/72-205:0.15940,CGD3_ARATH/62-187:0.21827):0.07111,(Q9SMD4_LYCES/51-182:0.33241,((Q9S7H9_LYCES/61-190:0.19611,(Q9SNV0_ANTMA/71-201:0.16599,(Q9SN11_ARATH/59-186:0.29715,O82678_CHERU/70-197:0.49457):0.02341):0.05683):0.08231,Q9SNV1_ANTMA/59-187:0.15866):0.06676):0.07209):0.06089,Q9SXN7_TOBAC/59-188:0.15833):0.28430):0.08356):0.19265):0.05629,Q9ZR04_ARATH/26-154:0.77539):0.49948):0.17008,(((Q9VKF0_DROME/205-327:0.98646,(O80513_ARATH/22-148:0.23745,O65065_PICMA/77-204:0.42060):0.87613):0.22255,(CG16_YEAST/19-152:0.10602,(CG17_YEAST/18-146:0.17293,Q12477_YEAST/19-146:0.19107):0.58378):0.74624):0.60589,Q9VZP3_DROME/42-165:1.10305):0.04907):0.74282,(Q9VE72_DROME/6-144:1.13997,(CG1C_ORYSA/4-144:1.09841,UME3_YEAST/45-176:0.95873):0.37439):0.23257):0.14253,CYCK_MOUSE/25-156:0.65113):0.46355,(Q9SXC3_ARATH/35-175:0.41935,(O49474_ARATH/28-170:0.45663,Q9SN70_ARATH/32-166:0.24438):0.18801):0.50880):0.23329,CCNT1_HUMAN/13-149:0.12149):0.01367,CCT_DROME/42-176:0.33119,CCNT2_HUMAN/10-148:0.11932); 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