EMBL-EBI > Goldman Group

PANDIT Home | Browse PANDIT | Help on PANDIT | Release notes | Pfam



PANDIT Homepage
pan•dit
PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View raw data for PF00124 - Photo_RC)
Photosynthetic reaction centre protein
(Pfam reference: accession no. PF00124)
(Interpro reference: accession no. IPR000484)


sequences alignment phylogeny
amino acids
(Pfam-A seed alignment)
13 sequences @ 310 aa
(ave. pairwise identity: 0.37)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 6.95)
nucleotides
(available for above)
12 sequences @ 930 bp
(ave. pairwise identity: 0.49)
New Hampshire format
(total tree length: 4.55)
amino acids, restricted set
(corresp. to available nt seqs)
12 sequences @ 310 aa
(ave. pairwise identity: 0.37)
New Hampshire format
(total tree length: 6.65)