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Protein and Associated NucleotideDomains with Inferred Trees
(View raw data for PF00115 - COX1)
Cytochrome C and Quinol oxidase polypeptide I
(Pfam reference: accession no. PF00115)
(Interpro reference: accession no. IPR000883)


sequences alignment phylogeny
amino acids
(Pfam-A seed alignment)
24 sequences @ 524 aa
(ave. pairwise identity: 0.41)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 12.49)
nucleotides
(available for above)
23 sequences @ 1572 bp
(ave. pairwise identity: 0.49)
New Hampshire format
(total tree length: 8.70)
amino acids, restricted set
(corresp. to available nt seqs)
23 sequences @ 524 aa
(ave. pairwise identity: 0.41)
New Hampshire format
(total tree length: 12.12)