EMBL-EBI > Goldman Group

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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00103 alignment
(17 sequences with 711 bp)


SOML_CYCLU/21-228 CTCGCCTCAAGTGTCCCACTAGACTGCAGGGAAGAGCAGGGTATCCTCTCGCGCTGCCCTTCCATCTCC------------------------------CAGGAGAAACTTCTCGACCGAGTCATCGAGCACGCTGAGCTCATCTACCGCGTCTCAGAAGAATCGTGCTCTTTGTATGAGGACATGTTTATCCCTTTGCAGTTCCAG------------------AGGAACCAAGTTGGC---------------------TACGCGTGCATCACCAAAACCTTACCCGTACCCAGCTCCAAGAATGAAATCCAACAGATATCTGACAAATGGCTGCTCCACTCGGTGCTGATGCTGGTCCAGTCCTGGATCGAGCCTTTGGTCTACCTGCAGACCTCGCTGGATCGCTACAACGCCGCT......CCCGAGATGCTCCTCAACAAGACCAAGTGGGTGTCTGAGAAACTGATCAGTCTGGAGCAAGGGGTGGTGGTCCTCATCAAGAAGATGTTGGATGAGGGGATGCTGACCATAAACCACAGTGAGCAAGGCCTCCTCCAGAATGGC------GTCCAGCCGCAGATGCTGGAATCAGTGATGCGGGACTACACCTTACTCAGCTGCTTCAAGAAAGACGCCCATAAGATGGAAGCTTTCCTGAAGCTCCTCAAGTGTCGCCAAACCGACAGATACAAC------TGC
SOMA_ACABU/4-202 GTGGTGCTCATGCTGTCGGTGCTGTCTCTGGGT------------GTCTCCTCTCAGCCGATCACGGAT------------------------------GGCCAGCGTCTGTTCTCCATCGCTGTCAGCAGAGTTCAACACCTCCACCTGCTCGCTCAGAGACTCTTCTCTGACTTTGAGAGCTCTCTGCAGACTGAGGAGCAACGA---------------CAGCTCAACAAAATCTTCCTG---------------CAGGATTTCTGTAACTCCGATTACATCATCAGCCCCATCGACAAGCACGAGACACAGCGCAGCTCAGTGTTGAAGCTGCTGTCTATCTCCTATCGATTGGTCGAGTCTTGGGAGTTCCCCAGTCGTTCTCTGGCTGGCGGT------TCTGCTCCAAGGAAC......------CAGATTTCACCCAAACTGTCTGAGCTGAAGACAGGCATCCATCTCCTGATCAGGGCCAATGAGGATGGAGCAGAGCTCTTCCCTGATAGCTCCGCCCTCCAGCTGGCTCCTTATGGAGACTACTACCATAGTCCGGGC------------------ACCGACGAGTCGCTGAGACGAACCTACGAACTACTTGCCTGTTTCAAAAAAGACATGCACAAGGTGGAGACCTACCTGACAGTGGCAAAATGTAGACTCTCTCCAGAGGCCAAC------TGC
CSH_HUMAN/9-215 CTGCTCCTGGCTTTTGCCCTGCTCTGCCTGCCCTGGCTTCAAGAGGCTGGTGCCGTCCAAACCGTTCCG------------------------------TTATCCAGGCTTTTTGACCACGCTATGCTCCAAGCCCATCGCGCGCACCAGCTGGCCATTGACACCTACCAGGAGTTTGAAGAAACCTATATCCCAAAGGACCAGAAG------------TATTCATTCCTGCATGACTCCCAG---------------ACCTCCTTCTGCTTCTCAGACTCTATTCCGACACCCTCCAACATGGAGGAAACGCAACAGAAATCCAATCTAGAGCTGCTCCGCATCTCCCTGCTGCTCATCGAGTCGTGGCTGGAGCCCGTGCGGTTCCTCAGG------------AGTATGTTCGCCAAC......AACCTGGTGTATGACACCTCGGACAGCGATGACTATCACCTCCTAAAGGACCTAGAGGAAGGCATCCAAACGCTGATGGGGAGGCTGGAAGACGGCAGCCGCCGGACTGGGCAGATCCTCAAGCAGACCTACAGCAAGTTTGACACAAAC------TCACACAACCATGACGCACTGCTCAAGAACTACGGGCTGCTCTACTGCTTCAGGAAGGACATGGACAAGGTCGAGACATTCCTGCGCATGGTGCAGTGCCGC---TCTGTAGAGGGT------AGCTGT
SOM2_HUMAN/9-215 CTGCTCCTGGCTTTTGGCCTGCTCTGCCTGTCCTGGCTTCAAGAGGGCAGTGCCTTCCCAACCATTCCC------------------------------TTATCCAGGCTTTTTGACAACGCTATGCTCCGCGCCCGTCGCCTGTACCAGCTGGCATATGACACCTATCAGGAGTTTGAAGAAGCCTATATCCTGAAGGAGCAGAAG------------TATTCATTCCTGCAGAACCCCCAG---------------ACCTCCCTCTGCTTCTCAGAGTCTATTCCAACACCTTCCAACAGGGTGAAAACGCAGCAGAAATCTAACCTAGAGCTGCTCCGCATCTCCCTGCTGCTCATCCAGTCATGGCTGGAGCCCGTGCAGCTCCTCAGG------------AGCGTCTTCGCCAAC......AGCCTGGTGTATGGCGCCTCGGACAGCAACGTCTATCGCCACCTGAAGGACCTAGAGGAAGGCATCCAAACGCTGATGTGGAGGCTGGAAGATGGCAGCCCCCGGACTGGGCAGATCTTCAATCAGTCCTACAGCAAGTTTGAC------ACAAAATCGCACAACGATGACGCACTGCTCAAGAACTACGGGCTGCTCTACTGCTTCAGGAAGGACATGGACAAGGTCGAGACATTCCTGCGCATCGTGCAGTGCCGC---TCTGTGGAGGGC------AGCTGT
PRRC_RAT/17-238 CTGGTGGTTTCAAACTTGCTCCTGTGGGAGAAA------------GCTGCATCAATTCCTGCATGTATGGTGGAA---GACGGTGGCTGCTGGGACCCCCTCCGGGAAGCATTTAACAGTGCTACCCAGAGAGCTGAAACCCTCCGTAATCTATCTGACCAGTTATATGTAGAGTTCTTCCAGAACCAATTCTCATCTAGACAGTTTGCAGATCTTAGTTCACAACTGATTAGGAAGGACGAGACTGTTCTCAAAGCTGGAACTTACTGCCATTCAAATCGTGCAAAA---CCCAAATCTAGG------GGAGTAAATATTGATATCGAAGAGTATTTAAAAATGTCGATCAATTTTTGTGGGTTCATGGATCAGCCTCTATTCCATCTGGTAATTGAACTGAGTGCCATGGAAGGTGTC......CCTGAAACTATCCTCTCTAAAGCTAAGGATCTGGAAGAGAACAACAGACAACTTTTGGATGACCTTAGGTGGATACTCACCAAGGTCTTC------CCTACAGCAGAGATAAAGGAAGAATTTCCCAGCTGGGACTATCTTTCATTCTTAAAATCAAGTAATAAAAATCATAAATTTTTGGCAATATTTAACCTTTCCAGCTGTCTAGACTATGACACACAAGTACACTATACATTATCTCAAATATTGAACTGTCTCATAACTGGGAAAGAT---------TGC
PLFR_MOUSE/17-240 CTGTTGATGTCAAATCTCTTCCTGTGGGAGAAG------------GTGTCCTCTGCACCCATAAATGCCAGT---------GAGGCTGTTCTCAGTGATCTGAAGGACTTGTTTGATAATGCCACTGTACTTTCTGGAGAGATGTCTAAGCTTGGTGTAATCATGCGCAAAGAATTTTTCATGAACTCATTCTCTTCAGAGACGTTCAATAAGATTATATTAGATTTGCACAAGAGTACGGAGAATATAACCAAGGCTTTCAACAGCTGCCACACTGTTCCCATCAACGTTCCTGAAACAGTTGAGGATGTCCGAAAGACATCGTTTGAAGAGTTTTTGAAAATGGTGCTCCATATGCTGCTAGCCTGGAAAGAGCCTCTGAAACATCTAGTGACAGAACTCAGTGCTTTGCCAGAATGC......CCTTATAGGATCCTATCAAAGGCCGAAGCCATTGAGGCAAAAAACAAAGACCTTCTAGAGTACATCATAAGAATAATATCTAAGGTTAAT------CCTGCAATCAAAGAAAATGAAGACTACCCGACCTGGTCAGATTTGGACTCCCTGAAGTCAGCTGATAAAGAAACTCAATTTTTTGCTCTTTATATGTTTTCCTTCTGCCTGCGTATTGACCTAGAAACAGTTGATTTTCTAGTCAATTTCCTAAAATGTCTGCTTCTTTATGATGAT------GTCTGC
PRRB_RAT/20-234 CTGTTGATGTCAAACATCCTTCTGTGGGAGAAT------------GTGGCCTCTGTGCCCAGGCATGCCAGTGGGGCTGGGCGTGGT---GAGATGTCTCTACATGGCCTGCTTGATCATGCCATCATTCTAGCTCATAATGTCACTGAGCTCATTGCAGAAATGAACAGTGTATTTCTGGAGGATGTGCTATATAAACCAGGCAGG---------------TGGTTCCCTGAAAGAGAC------------------CTTACTGCCTGCCACCGATCACCATTTACTATTGCAGTGTCTAAAGAAGGAACCCAACAGAGGCTGGGTGTATTCCTGGTGAAAGAGATGATTGGTATGTTGGAAACTTGGACATTCTCTCTATATCATATAGCAAATGAAATGAGTCATATGGAGGAACCC......CCTGATGAGATTATATCAAGAGCCAAAAACATTGAAGAAAAAATCAAAGAACTTATGGATGTTCTTAAAGGTATACTCAACAAGATTCAA------CCTGGATCCCCACAAAATGAGAGATTCCCTATGTGGAATGAACTGGCATACTTGCGGTCACCTGATGAAGAACGTCGCCATTTTGCTTTTACAAACTTATTCCAGTGCTTGCTCCAGGATTCACGGAAATTTGACTCAAAAGTCAGACTACTGAAGTGTAGACTTATCTATAATAGA------GATTGC
PRRA_RAT/17-227 CTGCTGGTGTCCAACCTGCTTCTGTGGGAGAAC---------ACAGCCTCTGCTATGAGAGCTAAACTGTTGAAT------GTCCACAACTACACATCCTATGGAGACACTTGGAATCAGGCAATTAAGATATCCCAGGACATGAATCAGTACATTTCAGATCTGTCCACTCACGTTAAAATATTTTATGCCCAAGGCCGAGGG---------------------TTTGAACGCCGGACC---------------------ACCAGATGCCACACTTCTTCCCTCTCTAGTCCAGAAAACAAGGAGCAAGCCCAACAGTTCCAACTGGAAGTACTACTGGGGTTGTCACACAGCCTATTGCAAGCCTGGCTCAACCCTCTGCACCATCTGTGGGCTGAAATGTGTGACAGGCTAGGATCC......ACTCCTCCTACCCTCTACAAGGCCTTGATGCTTAAGGAATCAAACATAAAGCTCCTGGATGCCATAAAGAATATTGCCAAAAAGGGTAAT------TTTGAAATCAACCAAAAGGCGAACTACACTGCCTGGTCTGAATTGGGATTCTTGCAATCGCCCAATAGAGACACTAGATACTTTGCCTTTTATAACCTGTTTCACTGCCTCAAGAAGGACTCAAATAACGTGGAAATGTATCTGAAGCTTCTGAAGTGCCGACTGATCCGAAGC---------AAGTGC
CSHV_RAT/16-223 CTGCTGGTGTCAAACCTGCTCTTGTGGGAAAAC------------ATGGCCTCCAAACCAACTGTGCTTGTGTCC------------------------ACTGAAGACCTGTATCATCGTTTGGTTGAACAGTCTCATAATACATTTATCAAGGCTGCAGATGTATACCGTGAATTTGATATAAATTTTGCCAAGAGAAGTTGG------------------ATGAAAGACAGGATACTT---------------------CCCCTGTGTCACACTGCTTCCATCCACGTTCCAGAGAATCGAGAGGAAGTTCATGAAATTAAAACTGAAGACCTTCTGAGATCAATCATCAATATTTCAGTTTCCTGGAAAGAACCTCTCAAACACTTTGTGTCTGCAGTGACTGATCTTCCGGGAGCT......TCTGCTAGTATGAGGAAAAAAGCTGTTGATATGAAGGACAAAAATCTTATAATTCTGGAGGGACTTCAGAAAATATTCAACAGGACTCAGACTAAGGTTGAAGAAAATGAAAATTTTGACTACCCTGCCTGGTCTGGACTCAAAGACTTGCAGTCATCTGATGAAGACACTCATCTTTTTGCCATTTATAATCTGTGCCGCTGCTTTAAAAGTGACATCCATAAGATTGACACTTATCTCAAAGTCTTGAGGTGCCGAGTTGTCTTTAAGAAT------GAGTGT
PRR4_BOVIN/26-239 CTGGTCATGTCAAATCTGCTCTTGTGCCAA---------------GGCATCTTATGCCCGTCCCTCTGTCCTGACGGGGATGACGTCTGCCGGGCCTCCCTTATAGACCTGTTTGTCCATGCCTCCGTTCTGTCCACCGGCATGTATAACACCTCCGTAAAAATGTTCACTGATTTTGATGAACAGTATGCCCAGGGAAAAGAG------------------TACTTTATCAATGTCTCC---------------------GACAAGTGCCACACCAATTCCCTCCATCTCCCTGAAGACATGCAGCACAATCCGACGGATGAACAGAAAGGCCTTATTATGTGGATACTCATGTTACTATACTCCTGGCAAAGACCTCTGTATCAGCTAGTCACGGACCTGCGGAGTATGAAAGAAGTC......TCAAATACTATCCTATCAAGCGCTAGAGAAAATGTGAAAAAACTAAAAGAACTTCAAGCACTCATAGAGAGGCCGTTCAGCCAGGTTATTTTTACAGCCAGGAGGAAGATGTACATCGCTCGCATTTACTGGTTTGGACTCCGATCCCTACTGTCGAGCAATGAAGATAGGCGTCATTCTGCATTTTATAGCCTGTTCTTCTGCCTGCGCAGAGATACTCGTAAACTTGACATTTACACCAAGTTCGTGGCGTGCCGACTGATCTATAAG---------AAGTGT
PRR3_BOVIN/1-213 ATGGTCATGTCAAATCTGCTCCTGTGCCAA---------------GTCAACTCATGCCCGTCCTGCTGTCCTGACGTGTTTGACATCCCCCTGGAATCCCTTACACACCTGTTTCTCAATGCCTCCAGGCTGTCACATGATATCGTTAACCATACCACCATAATGTTCCATGAGTTTGATGAAAAATATGCCCAGAACCAACCA------------------TACACTATCAATGCCACG---------------------AAAAGCTGCCATACCAATTCCCTCCATACTCCCCAAGAAAGAGAAAAAGCCCTAAGGATGAACAATGAAGACCTTAGTAAGTGGATACTTATGTTACTGTACTCCTGGCATAGACCTCTGTATCTTCTAGTCAAGGACCTGCAGAGTATGAAAGAAGTC......TCAGATACTATCCTATCAAGTGCCAAAGAGAACATGAGAAAAATAGAAGAACTTCAAGCATTCATAGAGAGGCAATTCAGCCAGGTTATTTATCCAGTAATACGGACAATATTCAAGGCTCGCATTTACTGGTCAGGACTCGCATCCCTGGTGTCCAACGATGAAGATGTGCGTCATTCTGCATTTTACAAGCTGTTCATGTGCCTGTATAGGGATTCACGTAAACTTGACATGTACACCGAGATCCTGGCGTGCCGAATCACCAACACG------------TGC
PRR1_BOVIN/26-238 CTGCTCATGTCTAATCTGCTCCTGTGCCAA---------------GGCAAATCATGCCCGTCCTGCGGTCCTGACGTGTTTGTCTCCTTACGGAAATCCTTTACAGACAGGTTTATGAATGCCGCCAGCCTCTCCCATGACTTCTATAACCTTTCCACAATAATGTTCAATGAGTTTGATGAAAAATATGCCCAGGGCAAACTC------------------TACTATATCAATGTCACC---------------------AAGAGCTGCCACACCAATTCCTTCCATGCTCCCGAAGAAAGAGATATAGTCCAGCAGACGAACATTGAAGACCTTAGTAAGTGGACACTCGTGTTGCTGTACTCCTGGAATAATCCTCTGCATCATCTAGTCACGGAGCTGCAGCATATGAAAGAACTG......TCAAACGCCTTCCTATCAAGCGCCACAAGGTTTGAGAACATGTCAGAGAAACTTCAAGCATTCATAGAGCGTCAATTCAGCAAGATTATTGTTCCAGTCTTGAATACGATGATCCAGGCTCGCAGTAGCTGGACAGGACTCCCATCCCTAATGTCCAGCGCTGAAGATAGGCGTCATTCGGAATTTTATAACCTGTTCTACTGCCTGCGCAGGGATTCACGTAAAGTTGACATGTACATCAAGATCCTGACGTGCCGAACCCACAAAACG------------TGC
CSH2_BOVIN/26-238 CTGGTCGTGTCTAATCTGCTCCTGTGCCAA---------------GGCATCTCATGCCCGTCCTGCGGTCCTGACATGTTTGTCTCCTTACAGAAATCCCTTATTGACGTGTTTATCAATGCCGCCAGCCTCTCCCACGACTTCCATAACCTTTCCACAATAATGTTCAATGAGTTTGATGAAAAATATGCCCAGGGCAAACTG------------------TACTATATCAATGCCACC---------------------AAGAGCTGCCACACCAATTCCTTCCATACTCCCGAAGAAAGAGATAAAGCCCAGCAGATGAACAATGAAGACCTTAGTAAGTGGACACTCGTGTTACTGTACTCCTGGAATAATCCTCTGTATTATCTACTCCTGGAGCTTCGGAATATGAAAAATCTG......TCAGAGGCAGTCATATCAAGTGCCATGGAGATTGAGAACATGTCAGAGAAACTTCAAGCATTCATTGAGAGTCAATTCAGGAAGATTATTGTTCCAGTCTTGAAGATGATACACGAGGTTAGCGACACCTGGTCAAGATTCTCATCCATGACGTTCAGCGATGAAGATAGGAGTATTTCTGAATATTATAACCTGTTCTACTGCCTGCGCAGGGATTCACGTAAAGTTGACATGTACATCAAGATCCTGACGTGCCGAACCCGCAAAACA------------TGC
CSH1_BOVIN/26-236 CTGGTGGTGTCAAATCTACTCTTGTGCCAGGGTGTGGAGGATTATGCACCATACTGTAAAAACCAACCTGGCAAC------------TGCCGGATTCCCCTTCAAAGCCTGTTTGAGAGAGCAACATTGGTGGCTAGCAACAACTATAGGCTCGCCAGGGAAATGTTCAATGAATTTAATAAACAGTTTGGCGAGGGCAAAAAC---------------------TTCACTTCCAAGGTC------------------ATCAACAGCTGCCACACCGAATTCATGACTACCCCTAATAACAAAGAAGCAGCTGCAAATACAGAGGACGAAGCCCTGTTGAGGTTGGTTATCAGTTTGCTCCACTCGTGGGATGAACCTCTGCATCAGGCAGTCACAGAGTTGTTGCACAGGAATGGAGCC......TCACCTGATATCTTGGCAAGGGCTAAAGAGATTGAGGACAAGACCAAAGTACTTCTAGAAGGTGTGGAAATGATACAAAAAAGGGTTCAT---CCTGGAGAGAAGAAGAACGAGCCCTATCCAGTGTGGTCAGAAAAGTCCTCC---CTGACAGCAGACGATGAGGATGTGCGCCAAACTGCCTTTTATAGAATGTTCCACTGCCTACACAGGGATTCGAGTAAAATTAGCACCTACATCAATTTGCTTAAGTGCCGA---TTCACCCCA------------TGC
PLF1_MOUSE/16-224 CTACTGGTGAACAGCTCGTTATTGTGGAAGAAT------------GTTGCCTCATTTCCCATGTGTGCAATGAGG---AATGGTCGTTGCTTTATGTCCTTTGAAGACACATTTGAATTAGCCGGCAGTTTGTCTCATAATATCAGTATAGAAGTTTCAGAACTGTTCACTGAATTTGAAAAACATTATTCTAACGTGTCTGGG------------------CTCAGAGACAAAAGCCCC---------------------ATGAGATGCAATACTTCTTTCCTTCCAACTCCAGAAAACAAGGAACAAGCCAGGCTCACACACTATTCAGCTCTTCTGAAATCAGGAGCCATGATTTTGGATGCCTGGGAAAGCCCTCTGGACGATCTAGTGAGTGAATTATCTACCATAAAAAATGTC......CCTGATATAATCATCTCCAAAGCCACAGACATAAAGAAAAAGATCAACGCAGTCCGGAACGGGGTTAATGCCCTCATGAGCACCATGCTTCAG------AATGGAGATGAAGAAAAGAAGAACCCTGCCTGGTTCTTGCAATCT------------GACAATGAAGATGCTCGCATTCATTCTTTATATGGCATGATCAGCTGCCTAGACAATGACTTTAAGAAGGTTGATATTTATCTCAACGTCCTGAAGTGTTACATGTTAAAAATAGATAAC------TGC
PRL_ANGAN/9-209 AGCCTCTTCTTGACAGCTCTGCTGTGTCTG---------------GCGAGCCAGGGGTACGCGGTGGGA------------------------------CTCGGCGACATGCTGGAACGGGCGTCGCAGCTGTCCGACAAGCTTCACTCTCTCAGCACGTCCCTGACCAACGACCTGGACACCCATTTCCCTCCGATGGGGAAG------------------ATCCTGATGCCACGCCCC---------------------TCCATGTGCCACACGGCTTCCCTCCAAACCCCTCACGACAAGGACCAGGCTTTGAGAGTGCCGGAATCAGAGCTGCTGTCCATCGCCCGCGCGCTCCTGCTGTCCTGGAACGATCCCCTGCTCCTGCTCGCCTCCGAGGCGCCCACGCTGTCCCATCCG...cagAACGGCGCCATCTACAGCAAAACAAGGGAACTGCAGGACCAGTCCAACAGCCTGAGCTCTGGGCTGGACAGGCTGATTCACAAGATTGGC---TCCTCCTCCAAGGCCCTCTCCCCCCTCCCCCTCCAAGGCGGCGACCTCGGC------------AGCGACAAGAACTCCCGCCTCATCAACTTCTACTTCCTGCTGTCCTGTTTCCGTCGGGACTCCCACAAAATCGACAACTTTCTCAAGCTCCTCCGTTGCCGGGCAGCCAAGCAG------GACCGATGC
PRL1_ONCKE/8-211 ACCAAACTCCACTTAGCAGTTCTGTGTCTA---------------GTTGTGTCCTGTCATGCCATTGGC------------------------------CTTAGTGACCTAATGGAGAGAGCTTCCCAGCGATCAGACAAGCTTCACTCACTCAGCACTTCCCTCACCAAGGACCTGGACTCTCACTTCCCACCAATGGGACGA------------------GTGATGATGCCACGCCCG---------------------TCTATGTGTCACACCTCCTCGCTCCAGACACCCAAGGACAAGGAGCAAGCACTCAAGGTATCGGAGAATGAGCTGATCTCCCTGGCTCGCTACCTCCTCCTGGCCTGGAACGATCCCCTGCTGCTGCTCTCCTCAGAGGCGCCGACTCTGCCCCACACGccgtccAATGGCGACATCAGCAGTAAGATCAGGGAACTGCAGGACTACTCCAAGAGCCTGGGAGATGGACTGGACATAATGGTCAACAAGATGGGA---CCCTCCTCCCAGTACATTTCTTCAATCCCCTTCAAGGGTGGAGACCTCGGC------------AATGACAAGACCTCCCGCCTCATCAACTTCCACTTCCTCATGTCTTGCTTCCGCAGGGACTCCCACAAAATCGACAGTTTCCTCAAGGTCCTTAGGTGCCGGGCTACAAATATGCGACCAGAAACATGT