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PANDIT Protein and Associated NucleotideDomains with Inferred Trees |
PF00098 phylogeny |
| (((((((((((((((((((((Q26692_TRYBB/296-313,Q83009_9RETR/655-672),GIS2_YEAST/116-133),BYR3_SCHPO/83-100),((GIS2_YEAST/47-64,GIS2_YEAST/23-40),((((BYR3_SCHPO/157-174,(BYR3_SCHPO/36-53,GLH1_CAEEL/183-200)),(GIS2_YEAST/65-82,((O02006_DROSI/553-570,Q26105_PANRE/245-262),Q26692_TRYBB/277-294))),((Q24262_DROME/285-302,Q18244_CAEEL/168-185),Q88189_SMRVH/261-278)),GIS2_YEAST/135-152))),((GRP2B_ARATH/136-153,(O96068_CIOIN/51-68,(GIS2_YEAST/92-109,O81453_ARATH/268-285))),Q41188_ARATH/129-146)),(((((CNBP_RAT/96-113,O65639_ARATH/253-270),GRP2_NICSY/157-174),(O65639_ARATH/164-181,O65639_ARATH/132-149)),((O65639_ARATH/230-247,GIS2_YEAST/4-21),(GLH4_CAEEL/570-587,O65639_ARATH/100-117))),(GRP2_NICSY/194-211,O65639_ARATH/280-297))),((CNBP_RAT/156-173,CNBP_RAT/52-69),GRP2B_ARATH/180-197)),(((((O24586_MAIZE/363-380,Q9ZQJ3_ARATH/37-54),((O74555_SCHPO/334-351,O74555_SCHPO/309-326),YIH9_YEAST/173-190)),(Q12476_YEAST/162-179,(O60324_HUMAN/867-884,CNBP_RAT/72-89))),((((Q12764_HUMAN/1165-1182,(((((Q72596_9HIV1/411-428,O38343_9HIV1/19-36),((GAG_HV1A2/412-429,Q75689_9HIV1/34-51),((Q72605_9HIV1/410-427,O38034_9HIV1/9-26),O92891_9HIV1/411-428))),O38461_9HIV1/9-26),O91079_9HIV1/414-431),Q87107_SIVCZ/437-454)),((((O81449_ARATH/230-247,O81903_ARATH/255-272),((((O92815_9RETR/501-518,GLH1_CAEEL/158-175),(Q9ZT25_MAIZE/255-272,O23864_9ORYZ/253-270)),(GAG_MLVF5/503-520,(GLH3_CAEEL/202-219,P91422_CAEEL/109-126))),Q9ZRJ0_TOBAC/228-245)),Q12764_HUMAN/785-802),O82196_ARATH/206-223)),(((P89153_SIVCZ/413-430,(GAG_SIVM1/412-429,(GAG_SIVGB/407-424,O90272_SIVCZ/415-432))),(GAG_HV2BE/410-427,Q74230_9HIV2/408-425)),O04013_VOLCA/217-234)),O41288_9RETR/548-565)),((POLX_TOBAC/230-247,(((((Q24262_DROME/266-283,P89903_SIVCZ/400-417),((CNBP_RAT/117-134,Q87763_SIVCZ/393-410),Q03259_SIVCZ/412-429)),((GAG_SIVA1/398-415,(O16635_CAEEL/311-328,O76571_CAEEL/608-625)),(O17342_CAEEL/143-160,Q12764_HUMAN/1229-1246))),Q12476_YEAST/61-78),GAK10_HUMAN/543-560)),(((Q88441_9VIRU/397-414,Q86998_9VIRU/736-753),((((((((((Q82850_9RETR/368-385,Q82850_9RETR/386-403),GAG_SIVAI/390-407),((GAG_IPMA/458-475,POST_XENLA/413-430),((GAG_EIAVY/400-417,P91581_CIOIN/242-259),(Q12186_YEAST/297-314,Q87763_SIVCZ/414-431)))),(GAG_FIVPE/375-392,(GAG_EIAVY/381-398,Q84808_9RETR/399-416))),(GAG_SIVA1/419-436,(Q66932_9RETR/394-411,Q84808_9RETR/418-435))),(((GAG_MMTVB/525-542,Q60505_9RODE/460-477),Q03259_SIVCZ/433-450),((((GAG_SIVGB/386-403,GAG_HV1A2/391-408),((GAG_HV2NZ/387-404,GAG_HV2BE/389-406),GAG_SIVMS/391-408)),GAG_SIVCZ/400-417),((P91599_CAERE/162-179,Q66275_9VIRU/739-756),Q9ZUT2_ARATH/80-97)))),O90272_SIVCZ/394-411),O96968_BOMMO/200-217),GAG_SIVAI/411-428),CNBP_RAT/135-152)),((Q88284_9RETR/535-552,(P89686_9RETR/428-445,(COPI_DROME/230-247,Q21278_CAEEL/113-130))),((GLH4_CAEEL/593-610,GLH4_CAEEL/616-633),GLH4_CAEEL/639-656)))))),((P90606_TRYEQ/17-34,(Q24310_DROME/243-260,(O02916_HUMAN/160-177,Q94901_DROME/168-185))),((CNBP_RAT/4-21,((Q9ZUT2_ARATH/58-75,(O22703_ARATH/115-132,Q42013_ARATH/6-23)),(((GAG_RSVP/507-524,Q94885_DROME/377-394),(O44200_BOMMO/229-246,O01418_BOMMO/639-656)),(Q9ZPF8_ARATH/180-197,GAG_JSRV/507-524)))),Q42412_NICSY/127-144))),((O22452_VOLCA/182-199,O77233_TRYCR/18-35),((Q66233_9VIRU/786-803,(O72700_9VIRU/737-754,POL_COYMV/879-896)),(((GLH3_CAEEL/222-239,GLH1_CAEEL/262-279),BYR3_SCHPO/17-34),(O77233_TRYCR/151-168,P90606_TRYEQ/162-179))))),(BYR3_SCHPO/116-133,BYR3_SCHPO/58-75)),(O23645_ARATH/89-106,Q9ZV83_ARATH/262-279)),(((HEXP_LEIMA/16-33,Q24081_DROME/266-283),(Q9ZQE9_ARATH/272-289,(((Q9ZV83_ARATH/285-302,GLH1_CAEEL/242-259),(Q12476_YEAST/99-116,YIH9_YEAST/112-129)),BYR3_SCHPO/135-152))),(O19137_BOVIN/217-234,((GAG_RSVP/533-550,Q24081_DROME/189-206),Q00833_FUSOX/344-361)))),O46363_CRIFA/5-22),(((HEXP_LEIMA/222-239,O77233_TRYCR/175-192),(HEXP_LEIMA/97-114,HEXP_LEIMA/140-157)),(HEXP_LEIMA/196-213,(((O46363_CRIFA/49-66,O77233_TRYCR/122-139),((P90606_TRYEQ/103-120,P90606_TRYEQ/43-60),O77233_TRYCR/44-61)),O46363_CRIFA/27-44)))),Q83009_9RETR/630-647),(HEXP_LEIMA/43-60,(O01418_BOMMO/616-633,Q91591_XENLA/210-227))),GAG_HTL1A/355-372),(GAG_BLVAU/345-362,GLH4_CAEEL/665-682)),(GAG_JSRV/534-551,Q88189_SMRVH/305-322)),GAG_BLVAU/370-387,GAG_HTL1A/378-395); |
| (((((((((((((((((((((Q26692_TRYBB/296-313:0.20558,Q83009_9RETR/655-672:0.25315):0.17201,GIS2_YEAST/116-133:0.24061):0.08448,BYR3_SCHPO/83-100:0.12501):0.14815,((GIS2_YEAST/47-64:0.25849,GIS2_YEAST/23-40:0.11488):0.17217,((((BYR3_SCHPO/157-174:0.28910,(BYR3_SCHPO/36-53:0.19928,GLH1_CAEEL/183-200:0.26378):0.16528):0.06468,(GIS2_YEAST/65-82:0.00000,((O02006_DROSI/553-570:0.45920,Q26105_PANRE/245-262:0.24167):0.22104,Q26692_TRYBB/277-294:0.23196):0.27658):0.06939):0.04489,((Q24262_DROME/285-302:0.31325,Q18244_CAEEL/168-185:0.32083):0.14893,Q88189_SMRVH/261-278:0.14382):0.14360):0.17355,GIS2_YEAST/135-152:0.09055):0.02919):0.28862):0.05190,((GRP2B_ARATH/136-153:0.01892,(O96068_CIOIN/51-68:0.21356,(GIS2_YEAST/92-109:0.31626,O81453_ARATH/268-285:0.20339):0.15705):0.11732):0.27155,Q41188_ARATH/129-146:0.00000):0.17854):0.06048,(((((CNBP_RAT/96-113:0.35388,O65639_ARATH/253-270:0.08743):0.15965,GRP2_NICSY/157-174:0.08039):0.09228,(O65639_ARATH/164-181:0.12281,O65639_ARATH/132-149:0.12322):0.03948):0.10184,((O65639_ARATH/230-247:0.22469,GIS2_YEAST/4-21:0.29959):0.12989,(GLH4_CAEEL/570-587:0.26130,O65639_ARATH/100-117:0.06337):0.11802):0.14710):0.04582,(GRP2_NICSY/194-211:0.08657,O65639_ARATH/280-297:0.24727):0.06519):0.03500):0.06588,((CNBP_RAT/156-173:0.13367,CNBP_RAT/52-69:0.20978):0.10251,GRP2B_ARATH/180-197:0.13773):0.12430):0.04445,(((((O24586_MAIZE/363-380:0.29843,Q9ZQJ3_ARATH/37-54:0.27209):0.08029,((O74555_SCHPO/334-351:0.32736,O74555_SCHPO/309-326:0.34853):0.23898,YIH9_YEAST/173-190:0.11013):0.11977):0.03974,(Q12476_YEAST/162-179:0.22243,(O60324_HUMAN/867-884:0.34279,CNBP_RAT/72-89:0.19862):0.03575):0.14480):0.14813,((((Q12764_HUMAN/1165-1182:0.24574,(((((Q72596_9HIV1/411-428:0.27047,O38343_9HIV1/19-36:0.02262):0.03593,((GAG_HV1A2/412-429:0.05725,Q75689_9HIV1/34-51:0.05725):0.00000,((Q72605_9HIV1/410-427:0.12122,O38034_9HIV1/9-26:0.01872):0.00000,O92891_9HIV1/411-428:0.07916):0.01872):0.00000):0.03770,O38461_9HIV1/9-26:0.02011):0.03852,O91079_9HIV1/414-431:0.17375):0.12460,Q87107_SIVCZ/437-454:0.25493):0.08200):0.04383,((((O81449_ARATH/230-247:0.17573,O81903_ARATH/255-272:0.11679):0.13771,((((O92815_9RETR/501-518:0.20215,GLH1_CAEEL/158-175:0.28601):0.10158,(Q9ZT25_MAIZE/255-272:0.12597,O23864_9ORYZ/253-270:0.28844):0.05725):0.07993,(GAG_MLVF5/503-520:0.24821,(GLH3_CAEEL/202-219:0.26288,P91422_CAEEL/109-126:0.23591):0.08303):0.13579):0.08936,Q9ZRJ0_TOBAC/228-245:0.38094):0.11748):0.06405,Q12764_HUMAN/785-802:0.26779):0.11162,O82196_ARATH/206-223:0.16022):0.22356):0.02639,(((P89153_SIVCZ/413-430:0.05754,(GAG_SIVM1/412-429:0.05864,(GAG_SIVGB/407-424:0.19874,O90272_SIVCZ/415-432:0.41118):0.17460):0.11890):0.15261,(GAG_HV2BE/410-427:0.04365,Q74230_9HIV2/408-425:0.12722):0.05488):0.08569,O04013_VOLCA/217-234:0.21386):0.08428):0.23733,O41288_9RETR/548-565:0.18218):0.11853):0.07350,((POLX_TOBAC/230-247:0.18681,(((((Q24262_DROME/266-283:0.51241,P89903_SIVCZ/400-417:0.05002):0.14751,((CNBP_RAT/117-134:0.27585,Q87763_SIVCZ/393-410:0.19565):0.05390,Q03259_SIVCZ/412-429:0.08321):0.09858):0.10368,((GAG_SIVA1/398-415:0.23826,(O16635_CAEEL/311-328:0.35882,O76571_CAEEL/608-625:0.19382):0.10398):0.00601,(O17342_CAEEL/143-160:0.28815,Q12764_HUMAN/1229-1246:0.27125):0.12356):0.03775):0.12981,Q12476_YEAST/61-78:0.27951):0.07444,GAK10_HUMAN/543-560:0.08378):0.13270):0.10834,(((Q88441_9VIRU/397-414:0.26938,Q86998_9VIRU/736-753:0.39893):0.05764,((((((((((Q82850_9RETR/368-385:0.32141,Q82850_9RETR/386-403:0.16720):0.07189,GAG_SIVAI/390-407:0.17218):0.09917,((GAG_IPMA/458-475:0.16005,POST_XENLA/413-430:0.32752):0.10383,((GAG_EIAVY/400-417:0.20321,P91581_CIOIN/242-259:0.12947):0.16282,(Q12186_YEAST/297-314:0.45177,Q87763_SIVCZ/414-431:0.08254):0.05619):0.09778):0.04026):0.03942,(GAG_FIVPE/375-392:0.13485,(GAG_EIAVY/381-398:0.21330,Q84808_9RETR/399-416:0.21781):0.01909):0.07997):0.02474,(GAG_SIVA1/419-436:0.10052,(Q66932_9RETR/394-411:0.33289,Q84808_9RETR/418-435:0.15832):0.04195):0.08171):0.07172,(((GAG_MMTVB/525-542:0.33592,Q60505_9RODE/460-477:0.13955):0.20522,Q03259_SIVCZ/433-450:0.07045):0.10291,((((GAG_SIVGB/386-403:0.38269,GAG_HV1A2/391-408:0.09294):0.09725,((GAG_HV2NZ/387-404:0.09607,GAG_HV2BE/389-406:0.17508):0.18185,GAG_SIVMS/391-408:0.07861):0.13350):0.05537,GAG_SIVCZ/400-417:0.09383):0.04353,((P91599_CAERE/162-179:0.57336,Q66275_9VIRU/739-756:0.01527):0.11013,Q9ZUT2_ARATH/80-97:0.35591):0.14898):0.09427):0.03248):0.05442,O90272_SIVCZ/394-411:0.24180):0.13392,O96968_BOMMO/200-217:0.20479):0.00000,GAG_SIVAI/411-428:0.22197):0.04495,CNBP_RAT/135-152:0.27848):0.09119):0.04843,((Q88284_9RETR/535-552:0.19199,(P89686_9RETR/428-445:0.14492,(COPI_DROME/230-247:0.19672,Q21278_CAEEL/113-130:0.43246):0.12744):0.03807):0.08227,((GLH4_CAEEL/593-610:0.39637,GLH4_CAEEL/616-633:0.01516):0.25150,GLH4_CAEEL/639-656:0.02999):0.16242):0.20432):0.02100):0.03646):0.07703):0.04534,((P90606_TRYEQ/17-34:0.17694,(Q24310_DROME/243-260:0.18054,(O02916_HUMAN/160-177:0.16232,Q94901_DROME/168-185:0.21368):0.16041):0.18199):0.21598,((CNBP_RAT/4-21:0.17731,((Q9ZUT2_ARATH/58-75:0.26660,(O22703_ARATH/115-132:0.12873,Q42013_ARATH/6-23:0.22427):0.04872):0.16111,(((GAG_RSVP/507-524:0.48679,Q94885_DROME/377-394:0.10216):0.19232,(O44200_BOMMO/229-246:0.22050,O01418_BOMMO/639-656:0.29021):0.22207):0.12449,(Q9ZPF8_ARATH/180-197:0.48251,GAG_JSRV/507-524:0.11274):0.20118):0.08977):0.07706):0.15848,Q42412_NICSY/127-144:0.07023):0.05813):0.03231):0.10820,((O22452_VOLCA/182-199:0.28057,O77233_TRYCR/18-35:0.17040):0.03751,((Q66233_9VIRU/786-803:0.07713,(O72700_9VIRU/737-754:0.22870,POL_COYMV/879-896:0.25419):0.08141):0.06476,(((GLH3_CAEEL/222-239:0.30248,GLH1_CAEEL/262-279:0.09701):0.14207,BYR3_SCHPO/17-34:0.25423):0.08630,(O77233_TRYCR/151-168:0.21397,P90606_TRYEQ/162-179:0.18023):0.06622):0.11903):0.10272):0.06165):0.00000,(BYR3_SCHPO/116-133:0.34183,BYR3_SCHPO/58-75:0.12502):0.36663):0.08955,(O23645_ARATH/89-106:0.15418,Q9ZV83_ARATH/262-279:0.39923):0.08173):0.09656,(((HEXP_LEIMA/16-33:0.21854,Q24081_DROME/266-283:0.08593):0.04542,(Q9ZQE9_ARATH/272-289:0.14875,(((Q9ZV83_ARATH/285-302:0.28102,GLH1_CAEEL/242-259:0.24143):0.23273,(Q12476_YEAST/99-116:0.05618,YIH9_YEAST/112-129:0.45780):0.14876):0.13486,BYR3_SCHPO/135-152:0.34574):0.19402):0.11396):0.04453,(O19137_BOVIN/217-234:0.14903,((GAG_RSVP/533-550:0.38566,Q24081_DROME/189-206:0.27857):0.14315,Q00833_FUSOX/344-361:0.25067):0.06119):0.05241):0.16102):0.10272,O46363_CRIFA/5-22:0.00000):0.10643,(((HEXP_LEIMA/222-239:0.04951,O77233_TRYCR/175-192:0.18507):0.14432,(HEXP_LEIMA/97-114:0.24349,HEXP_LEIMA/140-157:0.01941):0.04366):0.02251,(HEXP_LEIMA/196-213:0.07595,(((O46363_CRIFA/49-66:0.24204,O77233_TRYCR/122-139:0.19142):0.07110,((P90606_TRYEQ/103-120:0.15505,P90606_TRYEQ/43-60:0.17560):0.05441,O77233_TRYCR/44-61:0.15816):0.05353):0.02483,O46363_CRIFA/27-44:0.00000):0.07806):0.04071):0.00000):0.07320,Q83009_9RETR/630-647:0.28564):0.06920,(HEXP_LEIMA/43-60:0.05328,(O01418_BOMMO/616-633:0.36478,Q91591_XENLA/210-227:0.29330):0.21691):0.06150):0.21030,GAG_HTL1A/355-372:0.13576):0.17266,(GAG_BLVAU/345-362:0.10529,GLH4_CAEEL/665-682:0.30055):0.13912):0.19180,(GAG_JSRV/534-551:0.10251,Q88189_SMRVH/305-322:0.33720):0.32230):0.18689,GAG_BLVAU/370-387:0.23965,GAG_HTL1A/378-395:0.10956); |