EMBL-EBI > Goldman Group

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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00097 alignment
(63 sequences with 222 bp)


Q20802_CAEEL/160-209 TGTGTATTGTGCCTCAATCAAAAATATCAAAATCCAGAATGGtctgaa..................cagaatgatGCCAAATTAATTCGCCCTTGTTTTTGCGGAACATTA---------GTTCATCACGGATGTATCACTGAACGTCTGAAA---........................TTGGAAAAGACG---...............TGTCAATGGTGT
RAD8_SCHPO/877-922 TGTCCCATATGTTGTAATGAACCAATTCAAAATCCC------.................................------TTGTTATTGAACTGCAAGCATGCT---------------TGTTGCGGAGATTGTTTGTCAGAACATATTCAGTATcaaaaa............agaagaAACATAATTCCTCCG............cttTGTCATACATGT
Q39623_CHLRE/12-58 TGCTGGATTTGCCTTGCGGGC---GCCGAGTCTGGG------.................................---CCTCTTGAACGGCCGTGCCGCTGCCCC---------CGCTCCGTCCACCTGTCCTGTCTTGGCCGGTGGCAGCTGCAGcaggct............ggtcgcTCGGAGGAGCAGCGC...............TGCCGCTTCTGC
CBL_HUMAN/381-419 TGTAAAATATGTGCTGAAAATGATAAGGATGTAAAG------.................................---------ATTGAGCCCTGTGGACACCTC---------------ATGTGCACATCCTGTCTTACATCCTGGCAGGAA---........................TCAGAAGGTCAGGGC...............TGTCCTTTCTGC
Q9VB61_DROME/23-78 TGCTGGATCTGTTTTGAGACCGATAAGGAGGCAGGTCGCCAG.................................---GCTTGGGTGAATCCATGTCTCTGCCGAGGAACCAATAAGTGGGTGCACCAGAGCTGCATTTCCCTCTGGATCGACGAGaag..................accCGAATAAACAACAATctgcaagccgtttccTGTCCACAATGC
Q9W3I6_DROME/34-88 TGCTGGATTTGCCTGAGGGGCGATGAGGATCACCGCCGAAGG.................................---GATTGGGTGCATCCGTGTCGCTGTCGCGGCACCAATAAATGGGTGCACGAGGCCTGTCTGAGTCGCTGGATCGATGAG.....................aagGAGATGCTATCGCCGggtgctcccgtgacgTGCACCCAATGC
Q9CPS3_MOUSE/14-68 TGCTGGGTGTGCTTTGCCACCGATGAAGATGATAGAACAGCT.................................---GAGTGGGTGAGACCATGCAGGTGCAGAGGATCTACTAAGTGGGTTCACCAGGCTTGTCTCCAGCGCTGGGTAGATGAA.....................aagCAAAGAGGAAACAGCacagccagagtggccTGTCCTCAGTGC
Q21530_CAEEL/16-66 TGTAAATTCTGCTTCGGAACGGAAAGTGATAATGCGTTAAGC.................................------TTCGTTCATCCGTGTCGATGTCGAGGATCTATTCACTGGGTTCATCATCAATGCCTGGCCATGTGGTTTTCGAAA.....................gcgAATGCTGTACAACAA.........gttatgTGTATTCAGTGC
SSM4_YEAST/39-93 TGCCGTATTTGTCGTGGAGAAGCTACTGAGGACAAT------.................................---CCTCTTTTCCATCCTTGTAAATGCAGGGGCTCAATTAAATACATGCATGAATCCTGTCTGTTGGAATGGGTAGCTTCAaaaaatatagacatttcaaaaccaGGCGCGGATGTTAAA...............TGTGACATCTGT
Q93227_CAEEL/13-67 TGTCGGATATGTATGTGTGGCGAGACTTCAATTCCCTACCTGggccaa..................caagctggaGAGCCTCTCATTTCTCCTTGTAAGTGCTCCGGAACAATGGGTCTCTTTCATCGAAGCTGTTTGGAGCACTGGCTTACACTC........................ACAAGCACTACTAAC...............TGTGAAATCTGC
Q18997_CAEEL/25-71 TGCAGAATATGTTTCGATAACGATACGAGTTCC---------.................................GACAGTCTGATCAAGCCATGCTCTTGTAGCGGAACAGTCGCCTACGTTCACAATGGATGCTTGGAGCAATGGGTCCGTACA........................ACATCAAACATTCAA...............TGTACCATATGT
Q9P2E8_HUMAN/205-250 TGCCGCATCTGCTTCCAGGGGCCAGAACAGGGGGAG------.................................------CTGCTGAGCCCATGCCGCTGTGATGGCTCGGTCAAGTGCACACACCAGCCTTGCCTCATCAAGTGGATCAGCGAG........................CGGGGCTGCTGGAGC...............TGCGAGCTGTGC
Q9XWI0_CAEEL/194-247 TGTAGGATTTGTCATTGCTGTTGGCCTCCAGACTCAAATGAT.................................---CCGCTGATTTCTCCTTGTAGATGTTCTGGATCTTTGCAATATGTACATGTGTCGTGTTTAATGCACTGGCTCGACATTtcgtcg.........agaaagctgCATCGGCCTGCAATA...............TGCGAACTATGC
MARH2_MOUSE/64-109 TGCCGAATCTGCCACGAGGGAGCAAATGGG------------.................................GAGAACTTGCTGTCCCCATGTGGCTGCACGGGCACACTGGGAGCTGTGCACAAGAGCTGCCTGGAGAAATGGCTGTCTTCC........................TCCAACACCAGCTAC...............TGTGAGCTGTGT
Q9V972_DROME/167-212 TGTCGCATTTGTCACAATGCCGATAATCCCGAACAA------.................................------CTCGTGTCGCCGTGTTTGTGCAAGGGCTCGCTGACATATGTCCATGTTCACTGCCTGGAGTGTTGGATTAGCACC........................TCGCGCTGCACCACC...............TGCGAGCTGTGC
Q9H992_HUMAN/552-607 TGTAGAATTTGTCAAATGGCAGCTGCATCATCATCTAAT---.................................---TTGCTGATAGAGCCATGCAAGTGCACAGGAAGTTTGCAGTATGTCCACCAAGACTGTATGAAAAAGTGGTTACAGGCCaaaattaactctggttcttcattaGAAGCTGTAACCACC...............TGTGAACTATGT
O60103_SCHPO/8-54 TGCCGGGTGTGCCGGTGTGAGGGAGCACCAGATTCA------.................................---CCTCTCTTCCATCCATGTAAATGTACTGGAAGTATCAGATATGTTCATCAGGAATGTCTAGTAGAGTGGTTAGGTCAC........................AGTAAAAAAACACAT...............TGTGAACTTTGC
Q9DBD2_MOUSE/76-122 TGCAGGATCTGCCACTGTGAAGGGGATGACGAGAGC------.................................---CCTCTGATCACCCCCTGTCACTGCACAGGGAGCCTCCATTTCGTGCATCAGGCTTGCCTGCAGCAGTGGATCAAGAGT........................TCTGACACACGCTGC...............TGTGAACTCTGC
O49494_ARATH/68-114 TGCAGGATCTGCAGAAATCCTGGTGATGCAGACAAT------.................................---CCGCTTCGGTATCCGTGTGCCTGTAGCGGAAGTATCAAATTTGTTCACCAGGATTGTCTCCTTCAGTGGCTTAATCAC........................AGCAACGCTCGTCAA...............TGCGAGGTTTGC
Q9W3Y8_DROME/91-137 TGCCGCATCTGCCGCTGGAACCGCAACGACATGGAG------.................................---ATCATCAAATGTCCCTGCAACTGCAAGGGCAGCGTGGGCTACATCCACCTAAAGTGCTTGAAGCGCTGGATCATGCAC........................AGGCGGGATAATCGC...............TGTGAGATCTGC
Q9NIN1_9APIC/232-291 TGCCGTATTTGCCTGTGTGGTGAATCAGACCCTGGG------.................................---CCACTAGTAACCCCTTGCAATTGCAAGGGGTCCCTAAATTATGTCCATCTTGAATGCCTAAGGACTTGGATTAAAGGGcggttgtcaattgtgaaggatgatGATGCTTCCTTTTTCtggaaagagctatcaTGTGAGCTATGC
VIE1_BHV4D/132-176 TGTTGGATATGTAGAGATGGTGAGAGTTTACCTGAA------.................................---------GCAAGGTACTGCAATTGTTATGGGGACTTACAATATTGTCATGAAGAATGTTTAAAGACATGGATTAGCATG........................TCTGGAGAGAAAAAG...............TGTAAGTTCTGC
Q20977_CAEEL/52-95 TGTAGAATCTGTCAAATGCACGAGGGA---------------.................................---GATATGGTTAGACCATGTGATTGTGCTGGAACGATGGGTGATGTGCATGAGGAATGTCTCACGAAATGGGTAAACATG........................TCAAACAAGAAAACC...............TGTGAAATTTGT
O41933_MHV68/8-51 TGTTGGATCTGCCACCAGCCAGAGGGTCCCCTTAAA------.................................------------AGATTCTGTGGCTGCAAGGGGTCCTGTGCCGTGTCTCATCAAGACTGTCTACGTGGTTGGCTGGAGACG........................TCGCGTCGCCAGACG...............TGTGCGCTGTGT
O40920_HHV8/9-53 TGCTGGATTTGCAACGAGGAGCTCGGAAATGAGAGA------.................................---------TTTAGAGCCTGTGGATGCACAGGAGAGCTCGAGAACGTCCATAGAAGTTGTTTAAGCACCTGGCTCACTATC........................TCTAGAAACACGGCC...............TGTCAGATATGT
Q9VQI2_DROME/392-442 TGCTGGATCTGTTACGACTCC---GACAAGCCAGAG------.................................---CCCCTCATCCAGCCCTGCCGCTGCACTGGCGACGTAAGTTCGGTGCACCACGAGTGTCTCAAGCGCTGGCTGGTGGAGagctgc.........agcaattcgGAGGCGCAGTTGTCG...............TGCAAGGTCTGC
Q997C2_9POXV/23-68 TGTTGGATATGCAAAGAAGCCTGTGACATCGTACCC------.................................------------AATTACTGCAAATGCCGAGGGGATAATAAGATCGTGCATAAGGAATGTTTGGAAGAGTGGATCAACACAgat..................gtcGTGAAAAACAAATCG...............TGTGCCATATGC
Q9FIL2_ARATH/81-129 TGCAGGATCTGTCATCTTCCTTTAGAGACTAACAATGGTTTG.................................---CCTTTGCAATTAGGTTGCTCTTGTAAAGGTGATTTGGGTGTTGCTCATAGTAAGTGTGCTGAGACTTGGTTTAAGATC........................AAAGGAAACATGACA...............TGTGAGATATGC
Q9SQT6_ARATH/218-264 TGCAGGATCTGTCTGGACGTGTGCGAAGAAGGAAAT------.................................---ACTTTGAAAATGGAATGCAGCTGCAAAGGTGATCTCAGACTTGTTCATGAAGCTTGTGCAATGAAATGGTTTAGTACA........................AAGGGAACAAGAACC...............TGTGACGTCTGT
Q9FYM9_ARATH/249-296 TGTAGAATCTGTATGGTTGAAATGGAAGAAGATGAAGAA---.................................---GCTTTTAAGATGGAATGTATGTGCAAAGGGGAACTAGCTCTTGCCCACAAAACGTGCACTATCAAATGGTTTACAATT........................AAAGGGAACATAACA...............TGTGATGTGTGT
O64633_ARATH/74-119 TGCAGGGTTTGTCTACAAGACAAAGAAGAGGTTTTG------.................................------ATTGAACTAGGTTGTCAATGTCGTGGTGGTCTTGCTAAAGCTCACAGGTCTTGTATAGATGCTTGGTTTCGTACT........................AAAGGCTCTAACCAG...............TGTGAGATCTGT
Q9FWY0_ARATH/20-65 TGTAGAATCTGTCACGAAGAAGAAGCTGAGAGCTAC------.................................------TTTGAAGCTCCTTGTTCTTGTTCAGGAACCATCAAGTTCGCTCACAGAGATTGCATACAACGATGGTGTGATGAG........................AAAGGAAACACAATT...............TGTGAAATTTGT
VIE2_NPVOP/207-254 TGCCACATCTGCTCTTGCACGTTTACCGACATCCAAAACTACaat........................tcaaacTTCGTAACCTCCACTGAGTGCAACCACGCG---------------GTTTGTTTCAAATGTTACGTCAGCATCGTGTTTGGC........................AAGGAATCGTACAAG...............TGTAGCATCTGC
VCG3_NPVAC/8-62 TGCAACATTTGTTTTTCGGTTGCAGAAATTAAAAATTATTTTctgcaaccaatagacagattgactataatacccGTATTAGAACTAGACACGTGCAAACATCAA---------------TTATGCTCAATGTGTATACGCAAGATTAGAAAA---........................CGAAAAAAAGTACCA...............TGTCCCTTGTGT
YEU6_YEAST/206-249 TGCCCGATTTGTTTTGAACCTCCAGAGACAGCCCTC------.................................---------ATGACGTTATGTGGGCACGTC---------------TTTTGTTGTCCATGCTTATTTCAAATGGTTAATAGCtca...............agaacaTGTAGACAGTTCGGC............catTGCGCTCTTTGT
RAD5_YEAST/914-960 TGCTCCATCTGCACAACGGAACCTATGGATTTGGACAAG---.................................---GCTTTATTTACAGAATGCGGCCACAGT---------------TTTTGTGAGAAATGTTTATTTGAATATATTGAGTTTcag..................aacAGTAAGAATTTGGGT.........ttaaagTGCCCCAATTGC
RAD16_YEAST/537-580 TGCCAATTATGTAACGATGAAGCTGAGGAGCCCATT------.................................---------GAATCTAAATGTCACCATAAG---------------TTCTGTCGTTTATGCATCAAAGAATATGTGGAATCTttc..................atgGAAAACAACAATAAA.........cttactTGTCCTGTTTGT
RFP1_CAEEL/782-820 TGTCCATCATGTAAAACGAGGCCAAAGGATTGTATT------.................................---------ATGCTCAAATGCTATCATTTA---------------TTCTGTGAAACTTGCATTAAGACTATGTACGAC---........................ACTCGTCAACGGAAA...............TGCCCGAAATGC
ICP0_VZVD/19-57 TGCACCATATGCATGAGCACCGTTTCCGATCTCGGA------.................................------AAAACCATGCCGTGTTTGCACGAC---------------TTCTGCTTTGTTTGTATTCGGGCATGGACCTCC---........................---ACCAGCGTCCAG...............TGTCCTCTCTGC
ICP0_PRVIF/46-84 TGCCCCATCTGCCTGGACGTCGCGGCCACCGAGGCG------.................................------CAGACGCTGCCGTGCATGCACAAG---------------TTCTGTCTGGACTGCATCCAGCGCTGGACCCTG---........................---ACGAGCACCGCC...............TGCCCGCTGTGC
ICP0_BHV1J/13-51 TGCTGCATCTGCCTGGACGCGATCACCGGCGCGGCG------.................................------CGCGCTCTGCCCTGCCTGCACGCC---------------TTCTGCCTGGCCTGCATCCGCCGGTGGCTGGAG---........................---GGGCGCCCGACC...............TGCCCGCTGTGC
RNG1_HUMAN/19-58 TGCCCTATCTGCCTGGACATGCTGAAGAATACGATGACC---.................................---------ACCAAGGAGTGCCTCCACAGA---------------TTCTGCTCTGACTGCATTGTCACAGCCCTACGG---........................AGCGGGAACAAGGAG...............TGTCCTACCTGC
GOLI_DROME/303-343 TGTGCTATATGCATCGAAGCCTATAAGCCCACGGACACC---.................................---ATACGGATATTGCCGTGCAAGCACGAG---------------TTCCATAAAAACTGCATAGATCCGTGGCTTATA---........................---GAGCATCGAACC...............TGTCCCATGTGT
ICP0_HHV11/116-156 TGCGCCGTGTGCACGGATGAGATCGCGCCCCACCTGCGC---.................................---TGCGACACCTTCCCGTGCATGCACCGC---------------TTCTGCATCCCGTGCATGAAAACCTGGATGCAATTG........................CGCAAC---ACC---...............TGCCCGCTGTGC
NHL1_CAEEL/43-83 TGTCCGATTTGTCTCGATCGCTACAAACAACCCAAG------.................................---------CTTCTACCTTGTCAACACACA---------------TTTTGCTATCCATGCTTGGAAAGTTGTGCAGACACG.....................ttaCATCGCAATTTGAAA...............TGTCCAGAATGT
PML_HUMAN/57-91 TGCCAGCAATGCCAGGCGGAAGCCAAGTGCCCGAAG------.................................---------CTGCTGCCTTGTCTGCACACG---------------CTGTGCTCAGGATGCCTGGAGGCGTCGGGC------........................---------ATGCAG...............TGCCCCATCTGC
TRI27_HUMAN/16-56 TGCCCCGTGTGCCTGCAGTACTTCGCAGAGCCCATG------.................................---------ATGCTCGACTGCGGCCATAAC---------------ATCTGTTGCGCGTGCCTCGCCCGCTGCTGGGGCACG.....................gcaGAGACTAACGTGTCG...............TGCCCGCAGTGC
A33_PLEWA/162-201 TGCCCACTATGCAGGTCACTCTTCAAGGAACCCGTC------.................................---------ATTCTGGAATGTGGCCATAAC---------------TTCTGCAAGCACTGCATTGATAAATCTTGGGAGAGC.....................gccTCTGCC---TTTTCC...............TGCCCAGAATGC
YNN1_CAEEL/8-45 TGTGCGGTTTGCTTGGATTTTTTTGTGGAGCCTTGC------.................................---------ATAATAGAATGTGGTCATTCT---------------TATTGTCGATTTTGTATCGAAAGTCACCTGAAT---........................ATCAATGAAAAG---...............TGCCCACTGTGC
TRI30_MOUSE/15-58 TGTCCTATCTGTTTGGAGCTCCTGAAGGAACCTGTG------.................................---------AGTGCTGATTGTAACCACAGC---------------TTCTGCAGAGCCTGCATCACACTGAATTATGAGTCCaacaga............aacacaGACGGGAAGGGCAAC...............TGCCCTGTATGC
RO52_HUMAN/16-54 TGCCCTATCTGCCTGGACCCCTTCGTGGAGCCTGTG------.................................---------AGCATCGAGTGTGGCCACAGC---------------TTCTGCCAGGAATGCATCTCTCAGGTTGGGAAA---........................GGTGGGGGCAGCGTC...............TGTCCTGTGTGC
RAD18_YEAST/28-65 TGTCACATTTGTAAAGATTTTCTAAAAGTCCCCGTC------.................................---------TTAACACCTTGTGGCCATACA---------------TTTTGTTCCCTTTGTATTAGAACACATTTGAAT---........................AACCAACCAAAT---...............TGTCCTCTCTGC
BRCA1_HUMAN/24-64 TGTCCCATCTGTCTGGAGTTGATCAAGGAACCTGTC------.................................---------TCCACAAAGTGTGACCACATA---------------TTTTGCAAATTTTGCATGCTGAAACTTCTCAACCAG.....................aagAAAGGGCCTTCACAG...............TGTCCTTTATGT
RAG1_CHICK/289-327 TGCCAGATCTGTGAGCATATTTTGGCAGACCCAGTG------.................................---------GAAACAACGTGTAGACACTTG---------------TTTTGCAGAACTTGCATTCTCAGTTGCATCAGA---........................GTTATGGGATGCTAT...............TGCCCTTCCTGC
SUZ2_DROME/35-73 TGCCGACTTTGTCGCGGTTACATGATCGATCCAACC------.................................------ACTGTGGATTACTGTTATCATACC---------------TATTGCCGGAGTTGCATACTAAAGCACCTGCTG---........................---CGAGCGGTATAT...............TGTCCGGAATGT
PSC_DROME/265-303 TGTCACCTGTGCCAGGGATATCTGATCAATGCCACC------.................................------ACCATCGTCGAGTGTCTGCACTCC---------------TTCTGCCACAGTTGCCTCATTAATCACCTGCGA---........................---AAGGAGCGATTC...............TGCCCGCGCTGC
BMI1_HUMAN/18-56 TGTGTGCTTTGTGGAGGGTACTTCATTGATGCCACA------.................................------ACCATAATAGAATGTCTACATTCC---------------TTCTGTAAAACTTGTATTGTTCGTTACCTGGAG---........................---ACCAGCAAGTAT...............TGTCCTATTTGT
ZEF2_IRV6/85-132 TGTATTATTTGTTTAACAAATCAAGTTCAAATATTA------.................................---------ACAATACCTTGTGGACATCTT------------ATAATGTGCAACCCTTGTTCACTTAATTTAAATAATTCGgtttgc............accagaGGGGTAAACTCAAAC......tacgaaaaaTGCCCTAAATGC
PE38_NPVOP/39-91 TGCGCCGTGTGTTTGGAAACGTACTGCGTGCAATCCAACAACatt........................atcgacTTTTTGATGCCCAGCGAGTGCACCCATTTG---------------TTTTGCTACAAGTGTGTTTTGAACATGTACAAAAACgccatg.........aacgttccgCGCGCCGCCGTCAGC...............TGCCCCATGTGC
PE38_NPVAC/86-138 TGTAGTGTGTGTTTAGAAACATATTCCCAACAATCTAACGATact........................tgtcctTTTTTGATTCCGACTACGTGCGACCACGGT---------------TTTTGTTTCAAATGCGTCATCAATCTGCAAAGCAACgcgatg.........aatattccgCATTCCACTGTGTGC...............TGTCCATTGTGC
PEX2_CRIGR/243-282 TGTGCTCTCTGTGGAGAGTGGCCCACAATGCCTCAC------.................................---------ACCATTGGATGTGAACACGTC---------------TTCTGTTATTACTGTGTTAAAAGTAGCTTCCTATTT........................GACATGTACTTTACC...............TGTCCTAAGTGT
TRAF2_MOUSE/34-72 TGTTCAGCCTGCAAAAACATCCTGCGGAGGCCTTTC------.................................---------CAGGCCCAGTGTGGGCACCGC---------------TACTGCTCCTTCTGCCTGACCAGCATCCTCAGC---........................TCTGGGCCCCAGAAC...............TGTGCTGCCTGT
YKZ7_YEAST/179-223 TGTATTATTTGTTGTGATAAAAAGGATACGGAAACA------.................................------TTTGCGTTGGAATGTGGCCATGAA---------------TATTGTATCAATTGCTACCGTCATTACATCAAGGATaagttg............catgagGGGAACATCATTACA...............TGCATGGACTGT