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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00097 alignment
(65 sequences with 74 aa)


Q20802_CAEEL/160-209 CVLCLNQKYQNPEWse......qndAKLIRPCFCGTL---VHHGCITERLK-........LEKT-.....CQWC
RAD8_SCHPO/877-922 CPICCNEPIQNP--...........--LLLNCKHA-----CCGDCLSEHIQYqk....rrNIIPP....lCHTC
Q39623_CHLRE/12-58 CWICLAG-AESG--...........-PLERPCRCP---RSVHLSCLGRWQLQqa....grSEEQR.....CRFC
CBL_HUMAN/381-419 CKICAENDKDVK--...........---IEPCGHL-----MCTSCLTSWQE-........SEGQG.....CPFC
Q9VB61_DROME/23-78 CWICFETDKEAGRQ...........-AWVNPCLCRGTNKWVHQSCISLWIDEk......tRINNNlqavsCPQC
Q9W3I6_DROME/34-88 CWICLRGDEDHRRR...........-DWVHPCRCRGTNKWVHEACLSRWIDE.......kEMLSPgapvtCTQC
Q9CPS3_MOUSE/14-68 CWVCFATDEDDRTA...........-EWVRPCRCRGSTKWVHQACLQRWVDE.......kQRGNStarvaCPQC
Q21530_CAEEL/16-66 CKFCFGTESDNALS...........--FVHPCRCRGSIHWVHHQCLAMWFSK.......aNAVQQ...vmCIQC
SSM4_YEAST/39-93 CRICRGEATEDN--...........-PLFHPCKCRGSIKYMHESCLLEWVASknidiskpGADVK.....CDIC
Q93227_CAEEL/13-67 CRICMCGETSIPYLgq......qagEPLISPCKCSGTMGLFHRSCLEHWLTL........TSTTN.....CEIC
Q18997_CAEEL/25-71 CRICFDNDTSS---...........DSLIKPCSCSGTVAYVHNGCLEQWVRT........TSNIQ.....CTIC
Q9P2E8_HUMAN/205-250 CRICFQGPEQGE--...........--LLSPCRCDGSVKCTHQPCLIKWISE........RGCWS.....CELC
Q9XWI0_CAEEL/194-247 CRICHCCWPPDSND...........-PLISPCRCSGSLQYVHVSCLMHWLDIss...rklHRPAI.....CELC
MARH2_MOUSE/64-109 CRICHEGANG----...........ENLLSPCGCTGTLGAVHKSCLEKWLSS........SNTSY.....CELC
Q9V972_DROME/167-212 CRICHNADNPEQ--...........--LVSPCLCKGSLTYVHVHCLECWIST........SRCTT.....CELC
Q9H992_HUMAN/552-607 CRICQMAAASSSN-...........-LLIEPCKCTGSLQYVHQDCMKKWLQAkinsgsslEAVTT.....CELC
O60103_SCHPO/8-54 CRVCRCEGAPDS--...........-PLFHPCKCTGSIRYVHQECLVEWLGH........SKKTH.....CELC
Q9DBD2_MOUSE/76-122 CRICHCEGDDES--...........-PLITPCHCTGSLHFVHQACLQQWIKS........SDTRC.....CELC
O49494_ARATH/68-114 CRICRNPGDADN--...........-PLRYPCACSGSIKFVHQDCLLQWLNH........SNARQ.....CEVC
Q9W3Y8_DROME/91-137 CRICRWNRNDME--...........-IIKCPCNCKGSVGYIHLKCLKRWIMH........RRDNR.....CEIC
Q9NIN1_9APIC/232-291 CRICLCGESDPG--...........-PLVTPCNCKGSLNYVHLECLRTWIKGrlsivkddDASFFwkelsCELC
VIE1_BHV4D/132-176 CWICRDGESLPE--...........---ARYCNCYGDLQYCHEECLKTWISM........SGEKK.....CKFC
Q20977_CAEEL/52-95 CRICQMHEG-----...........-DMVRPCDCAGTMGDVHEECLTKWVNM........SNKKT.....CEIC
O41933_MHV68/8-51 CWICHQPEGPLK--...........----RFCGCKGSCAVSHQDCLRGWLET........SRRQT.....CALC
O40920_HHV8/9-53 CWICNEELGNER--...........---FRACGCTGELENVHRSCLSTWLTI........SRNTA.....CQIC
Q9VQI2_DROME/392-442 CWICYDS-DKPE--...........-PLIQPCRCTGDVSSVHHECLKRWLVEsc...snsEAQLS.....CKVC
Q997C2_9POXV/23-68 CWICKEACDIVP--...........----NYCKCRGDNKIVHKECLEEWINTd......vVKNKS.....CAIC
Q9FIL2_ARATH/81-129 CRICHLPLETNNGL...........-PLQLGCSCKGDLGVAHSKCAETWFKI........KGNMT.....CEIC
Q9SQT6_ARATH/218-264 CRICLDVCEEGN--...........-TLKMECSCKGDLRLVHEACAMKWFST........KGTRT.....CDVC
Q9FYM9_ARATH/249-296 CRICMVEMEEDEE-...........-AFKMECMCKGELALAHKTCTIKWFTI........KGNIT.....CDVC
O64633_ARATH/74-119 CRVCLQDKEEVL--...........--IELGCQCRGGLAKAHRSCIDAWFRT........KGSNQ.....CEIC
Q9FWY0_ARATH/20-65 CRICHEEEAESY--...........--FEAPCSCSGTIKFAHRDCIQRWCDE........KGNTI.....CEIC
VIE2_NPVOP/207-254 CHICSCTFTDIQNYn........snFVTSTECNHA-----VCFKCYVSIVFG........KESYK.....CSIC
VCG3_NPVAC/8-62 CNICFSVAEIKNYFlqpidrltiipVLELDTCKHQ-----LCSMCIRKIRK-........RKKVP.....CPLC
YEU6_YEAST/206-249 CPICFEPPETAL--...........---MTLCGHV-----FCCPCLFQMVNSs.....rtCRQFG....hCALC
RAD5_YEAST/914-960 CSICTTEPMDLDK-...........-ALFTECGHS-----FCEKCLFEYIEFq......nSKNLG...lkCPNC
RAD16_YEAST/537-580 CQLCNDEAEEPI--...........---ESKCHHK-----FCRLCIKEYVESf......mENNNK...ltCPVC
RFP1_CAEEL/782-820 CPSCKTRPKDCI--...........---MLKCYHL-----FCETCIKTMYD-........TRQRK.....CPKC
ICP0_VZVD/19-57 CTICMSTVSDLG--...........--KTMPCLHD-----FCFVCIRAWTS-........-TSVQ.....CPLC
ICP0_PRVIF/46-84 CPICLDVAATEA--...........--QTLPCMHK-----FCLDCIQRWTL-........-TSTA.....CPLC
ICP0_EHV1B/8-46 CPICLEDPSNYS--...........--MALPCLHA-----FCYVCITRWIR-........-QNPT.....CPLC
ICP0_BHV1J/13-51 CCICLDAITGAA--...........--RALPCLHA-----FCLACIRRWLE-........-GRPT.....CPLC
RNG1_HUMAN/19-58 CPICLDMLKNTMT-...........---TKECLHR-----FCSDCIVTALR-........SGNKE.....CPTC
GOLI_DROME/303-343 CAICIEAYKPTDT-...........-IRILPCKHE-----FHKNCIDPWLI-........-EHRT.....CPMC
ICP0_HHV11/116-156 CAVCTDEIAPHLR-...........-CDTFPCMHR-----FCIPCMKTWMQL........RN-T-.....CPLC
NHL1_CAEEL/43-83 CPICLDRYKQPK--...........---LLPCQHT-----FCYPCLESCADT.......lHRNLK.....CPEC
PML_HUMAN/57-91 CQQCQAEAKCPK--...........---LLPCLHT-----LCSGCLEASG--........---MQ.....CPIC
ESAG8_TRYBB/10-45 CAVCREPWAEGAVE...........---LLPCRHV-----FCTACVVQRWR-........-----.....CPSC
TRI27_HUMAN/16-56 CPVCLQYFAEPM--...........---MLDCGHN-----ICCACLARCWGT.......aETNVS.....CPQC
A33_PLEWA/162-201 CPLCRSLFKEPV--...........---ILECGHN-----FCKHCIDKSWES.......aSA-FS.....CPEC
YNN1_CAEEL/8-45 CAVCLDFFVEPC--...........---IIECGHS-----YCRFCIESHLN-........INEK-.....CPLC
TRI30_MOUSE/15-58 CPICLELLKEPV--...........---SADCNHS-----FCRACITLNYESnr....ntDGKGN.....CPVC
RO52_HUMAN/16-54 CPICLDPFVEPV--...........---SIECGHS-----FCQECISQVGK-........GGGSV.....CPVC
RAD18_YEAST/28-65 CHICKDFLKVPV--...........---LTPCGHT-----FCSLCIRTHLN-........NQPN-.....CPLC
BRCA1_HUMAN/24-64 CPICLELIKEPV--...........---STKCDHI-----FCKFCMLKLLNQ.......kKGPSQ.....CPLC
RAG1_CHICK/289-327 CQICEHILADPV--...........---ETTCRHL-----FCRTCILSCIR-........VMGCY.....CPSC
SUZ2_DROME/35-73 CRLCRGYMIDPT--...........--TVDYCYHT-----YCRSCILKHLL-........-RAVY.....CPEC
PSC_DROME/265-303 CHLCQGYLINAT--...........--TIVECLHS-----FCHSCLINHLR-........-KERF.....CPRC
BMI1_HUMAN/18-56 CVLCGGYFIDAT--...........--TIIECLHS-----FCKTCIVRYLE-........-TSKY.....CPIC
ZEF2_IRV6/85-132 CIICLTNQVQIL--...........---TIPCGHL----IMCNPCSLNLNNSvc....trGVNSN..yekCPKC
PE38_NPVOP/39-91 CAVCLETYCVQSNNi........idFLMPSECTHL-----FCYKCVLNMYKNam...nvpRAAVS.....CPMC
PE38_NPVAC/86-138 CSVCLETYSQQSNDt........cpFLIPTTCDHG-----FCFKCVINLQSNam...nipHSTVC.....CPLC
PEX2_CRIGR/243-282 CALCGEWPTMPH--...........---TIGCEHV-----FCYYCVKSSFLF........DMYFT.....CPKC
TRAF2_MOUSE/34-72 CSACKNILRRPF--...........---QAQCGHR-----YCSFCLTSILS-........SGPQN.....CAAC
YKZ7_YEAST/179-223 CIICCDKKDTET--...........--FALECGHE-----YCINCYRHYIKDkl....heGNIIT.....CMDC