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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00097 phylogeny
for nucleotide alignment


 
(((((((((((((((((((((Q9FYM9_ARATH/249-296,(O64633_ARATH/74-119,Q9FIL2_ARATH/81-129)),Q9SQT6_ARATH/218-264),O40920_HHV8/9-53),(((Q9FWY0_ARATH/20-65,(Q18997_CAEEL/25-71,(Q21530_CAEEL/16-66,Q20802_CAEEL/160-209))),(((O49494_ARATH/68-114,O60103_SCHPO/8-54),(Q9XWI0_CAEEL/194-247,Q93227_CAEEL/13-67)),SSM4_YEAST/39-93)),((Q997C2_9POXV/23-68,VIE1_BHV4D/132-176),Q20977_CAEEL/52-95))),Q9H992_HUMAN/552-607),(O41933_MHV68/8-51,Q9V972_DROME/167-212)),MARH2_MOUSE/64-109),(Q9NIN1_9APIC/232-291,Q9DBD2_MOUSE/76-122)),Q9P2E8_HUMAN/205-250),(Q9CPS3_MOUSE/14-68,(Q9W3I6_DROME/34-88,Q9VB61_DROME/23-78))),((Q9VQI2_DROME/392-442,Q39623_CHLRE/12-58),Q9W3Y8_DROME/91-137)),CBL_HUMAN/381-419),(PML_HUMAN/57-91,NHL1_CAEEL/43-83)),(VCG3_NPVAC/8-62,GOLI_DROME/303-343)),(((ICP0_HHV11/116-156,ICP0_VZVD/19-57),ICP0_PRVIF/46-84),ICP0_BHV1J/13-51)),RNG1_HUMAN/19-58),(((TRAF2_MOUSE/34-72,(BRCA1_HUMAN/24-64,(RAG1_CHICK/289-327,RAD18_YEAST/28-65))),(PEX2_CRIGR/243-282,(((((BMI1_HUMAN/18-56,(PSC_DROME/265-303,SUZ2_DROME/35-73)),YNN1_CAEEL/8-45),(A33_PLEWA/162-201,TRI27_HUMAN/16-56)),RAD16_YEAST/537-580),RFP1_CAEEL/782-820))),TRI30_MOUSE/15-58)),RO52_HUMAN/16-54),((RAD5_YEAST/914-960,(RAD8_SCHPO/877-922,(YKZ7_YEAST/179-223,ZEF2_IRV6/85-132))),YEU6_YEAST/206-249)),VIE2_NPVOP/207-254),PE38_NPVAC/86-138,PE38_NPVOP/39-91);
(((((((((((((((((((((Q9FYM9_ARATH/249-296:0.24675,(O64633_ARATH/74-119:0.50428,Q9FIL2_ARATH/81-129:0.27502):0.14977):0.07522,Q9SQT6_ARATH/218-264:0.16716):0.21966,O40920_HHV8/9-53:0.40893):0.09553,(((Q9FWY0_ARATH/20-65:0.30533,(Q18997_CAEEL/25-71:0.35989,(Q21530_CAEEL/16-66:0.50051,Q20802_CAEEL/160-209:0.48504):0.18829):0.12080):0.05359,(((O49494_ARATH/68-114:0.38885,O60103_SCHPO/8-54:0.16222):0.10591,(Q9XWI0_CAEEL/194-247:0.37711,Q93227_CAEEL/13-67:0.35826):0.12605):0.11521,SSM4_YEAST/39-93:0.41541):0.12396):0.11951,((Q997C2_9POXV/23-68:0.46550,VIE1_BHV4D/132-176:0.31217):0.19866,Q20977_CAEEL/52-95:0.27187):0.11271):0.03446):0.05940,Q9H992_HUMAN/552-607:0.44640):0.14291,(O41933_MHV68/8-51:0.48291,Q9V972_DROME/167-212:0.27040):0.12563):0.06668,MARH2_MOUSE/64-109:0.32581):0.08228,(Q9NIN1_9APIC/232-291:0.44534,Q9DBD2_MOUSE/76-122:0.19521):0.11254):0.13312,Q9P2E8_HUMAN/205-250:0.32426):0.05507,(Q9CPS3_MOUSE/14-68:0.27704,(Q9W3I6_DROME/34-88:0.32955,Q9VB61_DROME/23-78:0.17948):0.07298):0.28715):0.13963,((Q9VQI2_DROME/392-442:0.27995,Q39623_CHLRE/12-58:0.33124):0.09633,Q9W3Y8_DROME/91-137:0.37110):0.07650):0.17198,CBL_HUMAN/381-419:0.68168):0.04976,(PML_HUMAN/57-91:0.30696,NHL1_CAEEL/43-83:0.45538):0.18976):0.09119,(VCG3_NPVAC/8-62:0.96189,GOLI_DROME/303-343:0.15866):0.29574):0.07038,(((ICP0_HHV11/116-156:0.33350,ICP0_VZVD/19-57:0.42521):0.12997,ICP0_PRVIF/46-84:0.09596):0.13995,ICP0_BHV1J/13-51:0.15251):0.14745):0.22463,RNG1_HUMAN/19-58:0.28571):0.13208,(((TRAF2_MOUSE/34-72:0.55690,(BRCA1_HUMAN/24-64:0.16995,(RAG1_CHICK/289-327:0.52165,RAD18_YEAST/28-65:0.31257):0.16121):0.18240):0.07357,(PEX2_CRIGR/243-282:0.46154,(((((BMI1_HUMAN/18-56:0.19250,(PSC_DROME/265-303:0.23652,SUZ2_DROME/35-73:0.40572):0.24753):0.13289,YNN1_CAEEL/8-45:0.33311):0.14905,(A33_PLEWA/162-201:0.29396,TRI27_HUMAN/16-56:0.39599):0.15752):0.07442,RAD16_YEAST/537-580:0.43577):0.08208,RFP1_CAEEL/782-820:0.60718):0.07440):0.11872):0.09632,TRI30_MOUSE/15-58:0.21058):0.11410):0.10274,RO52_HUMAN/16-54:0.12813):0.28986,((RAD5_YEAST/914-960:0.25664,(RAD8_SCHPO/877-922:0.42688,(YKZ7_YEAST/179-223:0.50052,ZEF2_IRV6/85-132:0.42388):0.19218):0.20167):0.25848,YEU6_YEAST/206-249:0.38432):0.14738):0.21788,VIE2_NPVOP/207-254:0.51191):0.21427,PE38_NPVAC/86-138:0.32096,PE38_NPVOP/39-91:0.16749);