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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00078 phylogeny
for restricted amino acid alignment


 
(((((((((((Q46666_ECOLI/25-241,Q47526_ECOLI/25-239),(P71276_ECOLI/53-269,(Q05804_ECOLI/35-235,(RT86_ECOLI/44-248,(RT67_ECOLI/39-262,(RT16_MYXXA/177-407,RT65_MYXXA/146-366)))))),(Q44225_9NOST/18-215,((O82894_ECO57/106-332,((O99969_PORPU/91-315,O99970_PORPU/91-315),Q08724_9CYAN/99-336)),(((O69788_RHIME/63-291,Q47277_ECOLI/59-288),O52209_9ZZZZ/126-366),(((((O85869_SPHAR/80-369,O85879_SPHAR/38-327),((((Q02718_PODAN/251-530,Q33759_ALLMA/257-536),YMF40_MARPO/59-333),Q02717_PODAN/239-528),((AI1M_YEAST/306-577,(O47500_VENIN/317-590,YMC6_SCHPO/291-566)),LTRA_LACLA/81-361))),((Q35056_MARPO/390-645,YKFC_ECOLI/77-332),Q35057_MARPO/535-811)),(Q35058_MARPO/614-898,O99479_PAVLU/102-389)),(O52231_STRPN/59-275,P95451_PSEAC/110-326)))))),(O16589_CAEEL/416-647,(((((Q08525_CHICK/546-775,Q17003_ANOGA/596-832),((O16587_CAEEL/771-970,O16615_CAEEL/9-170),((O76601_CAEEL/700-951,Q20175_CAEEL/524-775),(O16610_CAEEL/355-567,O17305_CAEEL/424-636)))),((Q9YGS2_FUGRU/564-830,Q26816_9TRYP/536-793),Q24690_DROTE/486-742)),(((((Q04135_DROME/487-743,Q24335_DROME/489-745),(RTJK_DROFU/493-757,RTJK_DROME/493-757)),(O96546_LYMDI/517-780,Q93137_BOMMO/506-771)),Q07995_9DIPT/500-760),((O13348_MAGGR/488-764,Q01379_NEUCR/496-761),((O01419_BOMMO/493-756,(Q93139_BOMMO/460-719,Y2R2_DROME/489-741)),O18558_AEDAE/463-725)))),((O45384_CAEEL/431-703,Q9YW31_MSEPV/152-406),(((((O23410_ARATH/299-553,O82276_ARATH/347-618),(O81630_ARATH/865-1114,((O22148_ARATH/488-727,Q9ZQM0_ARATH/314-569),(O22220_ARATH/212-456,Q9ZQF8_ARATH/430-674)))),((O65598_ARATH/480-747,O81517_ARATH/399-666),(O81284_ARATH/49-317,((O64612_ARATH/779-1031,Q9ZUF0_ARATH/655-923),((O65244_ARATH/396-664,O82216_ARATH/229-497),(O81068_ARATH/805-1073,Q9ZQQ6_ARATH/650-918)))))),((O64428_CHLVU/545-816,YTX2_XENLA/504-765),((POL2_MOUSE/515-780,O62658_CANFA/508-773),O93520_ORYLA/509-771))),(O44316_DROMR/385-650,POLR_DROME/394-660)))))),RTP2_TRYBG/585-780),POL_IPMAI/8-159),((((POL_BLVAU/32-212,(POL_HTL1A/58-238,POL_HTLV2/143-323)),((O92815_9RETR/802-976,POL_GALV/209-390),(((O93209_9RETR/193-360,O41894_9RETR/193-360),POL_SFV1/208-375),Q88285_9RETR/839-1015))),((((POL_FIVT2/209-388,((POL_HV2KR/237-417,POL_SIVGB/218-398),(POL_HV1MA/208-388,(POL_SIVA1/245-425,POL_SIVAI/248-428)))),Q82851_9RETR/589-766),Q03261_SIVCZ/237-416),(((POK10_HUMAN/67-245,POL_SRV1/65-243),Q83013_9RETR/59-238),POL_RSVP/52-230))),((O96849_DICDI/44-215,Q26106_PANRE/37-203),(Q24310_DROME/491-649,((Q17329_CAEEL/1062-1231,(O42691_ALTAL/27-202,(((POL_SOCMV/237-411,Q84682_9VIRU/225-395),((POL_CERV/262-436,POL_FMVD/273-445),Q88442_9VIRU/312-485)),((POL_RTBVP/1219-1390,(Q66233_9VIRU/1315-1494,((O72700_9VIRU/1270-1449,POL_COYMV/1436-1615),Q86998_9VIRU/1288-1467))),Q89703_9VIRU/241-413)))),(((((P91581_CIOIN/474-644,O17342_CAEEL/378-547),(Q24262_DROME/522-692,Q94885_DROME/750-920)),((Q9ZQ67_ARATH/533-701,Q9ZQQ3_ARATH/499-668),(Q9ZNW4_SORBI/913-1081,Q9ZTP2_MAIZE/347-516))),(POL4_DROME/348-523,(POLY_DROME/215-390,Q65353_NPVAC/172-346))),(Q99315_YEAST/630-797,(((O81454_ARATH/135-304,Q9ZQ09_ARATH/379-543),(Q9ZS84_LYCES/646-815,Q9ZVK4_ARATH/504-669)),RT21_SCHPO/446-615)))))))),DPOL_HPBDC/385-564),O71304_9HEPA/355-590),(DPOL_HPBGS/404-636,DPOL_WHV59/407-639)),DPOL_HPBV4/366-600,Q69590_HPBV0/63-297);
(((((((((((Q46666_ECOLI/25-241:0.37472,Q47526_ECOLI/25-239:0.46617):0.55202,(P71276_ECOLI/53-269:1.08196,(Q05804_ECOLI/35-235:0.53378,(RT86_ECOLI/44-248:0.57086,(RT67_ECOLI/39-262:0.73901,(RT16_MYXXA/177-407:0.42439,RT65_MYXXA/146-366:0.40771):0.25445):0.15336):0.23047):0.10595):0.13197):0.64142,(Q44225_9NOST/18-215:1.38551,((O82894_ECO57/106-332:0.55470,((O99969_PORPU/91-315:0.12384,O99970_PORPU/91-315:0.19618):0.34911,Q08724_9CYAN/99-336:0.30218):0.20505):0.12259,(((O69788_RHIME/63-291:0.38342,Q47277_ECOLI/59-288:0.20982):0.49625,O52209_9ZZZZ/126-366:0.58329):0.17640,(((((O85869_SPHAR/80-369:0.16875,O85879_SPHAR/38-327:0.24319):0.16860,((((Q02718_PODAN/251-530:0.24379,Q33759_ALLMA/257-536:0.32205):0.10528,YMF40_MARPO/59-333:0.31626):0.08119,Q02717_PODAN/239-528:0.32729):0.11521,((AI1M_YEAST/306-577:0.57939,(O47500_VENIN/317-590:0.30613,YMC6_SCHPO/291-566:0.27776):0.22476):0.10699,LTRA_LACLA/81-361:0.44965):0.06757):0.10064):0.13608,((Q35056_MARPO/390-645:0.59355,YKFC_ECOLI/77-332:0.54438):0.11294,Q35057_MARPO/535-811:0.87668):0.11833):0.06322,(Q35058_MARPO/614-898:0.93993,O99479_PAVLU/102-389:0.62438):0.15671):0.16992,(O52231_STRPN/59-275:0.36504,P95451_PSEAC/110-326:0.40942):0.40703):0.14643):0.07036):0.21562):0.27189):0.23272,(O16589_CAEEL/416-647:3.63458,(((((Q08525_CHICK/546-775:0.68883,Q17003_ANOGA/596-832:0.73898):0.22092,((O16587_CAEEL/771-970:0.76895,O16615_CAEEL/9-170:0.85581):0.52747,((O76601_CAEEL/700-951:0.28592,Q20175_CAEEL/524-775:0.14250):0.08935,(O16610_CAEEL/355-567:0.54396,O17305_CAEEL/424-636:0.56360):0.04464):0.15188):0.21821):0.32361,((Q9YGS2_FUGRU/564-830:0.78090,Q26816_9TRYP/536-793:0.83576):0.07041,Q24690_DROTE/486-742:0.88961):0.03910):0.10597,(((((Q04135_DROME/487-743:0.18809,Q24335_DROME/489-745:0.18321):0.35307,(RTJK_DROFU/493-757:0.17915,RTJK_DROME/493-757:0.12401):0.41367):0.18678,(O96546_LYMDI/517-780:0.23776,Q93137_BOMMO/506-771:0.44280):0.26425):0.08768,Q07995_9DIPT/500-760:0.55339):0.32269,((O13348_MAGGR/488-764:0.89677,Q01379_NEUCR/496-761:0.63305):0.26528,((O01419_BOMMO/493-756:0.83665,(Q93139_BOMMO/460-719:0.69848,Y2R2_DROME/489-741:0.68547):0.17267):0.11703,O18558_AEDAE/463-725:0.77715):0.21270):0.05223):0.08918):0.14516,((O45384_CAEEL/431-703:0.82791,Q9YW31_MSEPV/152-406:0.80979):0.21742,(((((O23410_ARATH/299-553:0.22077,O82276_ARATH/347-618:0.05964):0.42926,(O81630_ARATH/865-1114:0.46221,((O22148_ARATH/488-727:0.38155,Q9ZQM0_ARATH/314-569:0.46467):0.11768,(O22220_ARATH/212-456:0.27984,Q9ZQF8_ARATH/430-674:0.34294):0.08801):0.10787):0.36630):0.16953,((O65598_ARATH/480-747:0.17950,O81517_ARATH/399-666:0.18762):0.23897,(O81284_ARATH/49-317:0.51794,((O64612_ARATH/779-1031:0.26912,Q9ZUF0_ARATH/655-923:0.16360):0.03943,((O65244_ARATH/396-664:0.07912,O82216_ARATH/229-497:0.11137):0.11320,(O81068_ARATH/805-1073:0.02954,Q9ZQQ6_ARATH/650-918:0.27322):0.11085):0.06329):0.19330):0.05772):0.27064):0.39401,((O64428_CHLVU/545-816:1.02079,YTX2_XENLA/504-765:0.67052):0.11893,((POL2_MOUSE/515-780:0.15583,O62658_CANFA/508-773:0.21034):0.35604,O93520_ORYLA/509-771:0.51838):0.22594):0.11303):0.15740,(O44316_DROMR/385-650:0.15121,POLR_DROME/394-660:0.19385):0.87096):0.11303):0.16598):0.24540):0.15451):0.14662,RTP2_TRYBG/585-780:1.35398):0.43860,POL_IPMAI/8-159:1.04442):0.12515,((((POL_BLVAU/32-212:0.45909,(POL_HTL1A/58-238:0.18912,POL_HTLV2/143-323:0.10715):0.19533):0.25631,((O92815_9RETR/802-976:0.40404,POL_GALV/209-390:0.54469):0.15329,(((O93209_9RETR/193-360:0.18181,O41894_9RETR/193-360:0.17438):0.09774,POL_SFV1/208-375:0.06552):0.62912,Q88285_9RETR/839-1015:0.70632):0.15171):0.26626):0.12785,((((POL_FIVT2/209-388:0.34019,((POL_HV2KR/237-417:0.25109,POL_SIVGB/218-398:0.25517):0.05547,(POL_HV1MA/208-388:0.17619,(POL_SIVA1/245-425:0.13898,POL_SIVAI/248-428:0.12938):0.19908):0.07618):0.03820):0.10366,Q82851_9RETR/589-766:0.43150):0.06336,Q03261_SIVCZ/237-416:0.24530):0.33205,(((POK10_HUMAN/67-245:0.27468,POL_SRV1/65-243:0.41979):0.16130,Q83013_9RETR/59-238:0.40285):0.03317,POL_RSVP/52-230:0.39323):0.27793):0.10856):0.12759,((O96849_DICDI/44-215:0.62141,Q26106_PANRE/37-203:1.29282):0.44291,(Q24310_DROME/491-649:1.02185,((Q17329_CAEEL/1062-1231:0.63030,(O42691_ALTAL/27-202:0.89487,(((POL_SOCMV/237-411:0.19385,Q84682_9VIRU/225-395:0.32396):0.14185,((POL_CERV/262-436:0.13791,POL_FMVD/273-445:0.18504):0.22050,Q88442_9VIRU/312-485:0.19485):0.13397):0.09114,((POL_RTBVP/1219-1390:0.53208,(Q66233_9VIRU/1315-1494:0.14726,((O72700_9VIRU/1270-1449:0.09905,POL_COYMV/1436-1615:0.18572):0.03741,Q86998_9VIRU/1288-1467:0.17178):0.06600):0.29972):0.13975,Q89703_9VIRU/241-413:0.47503):0.09474):0.26262):0.08691):0.05546,(((((P91581_CIOIN/474-644:0.72392,O17342_CAEEL/378-547:0.63493):0.16453,(Q24262_DROME/522-692:0.58413,Q94885_DROME/750-920:0.34666):0.16092):0.10588,((Q9ZQ67_ARATH/533-701:0.16822,Q9ZQQ3_ARATH/499-668:0.15365):0.24473,(Q9ZNW4_SORBI/913-1081:0.25002,Q9ZTP2_MAIZE/347-516:0.19301):0.12638):0.46351):0.07598,(POL4_DROME/348-523:0.58172,(POLY_DROME/215-390:0.52507,Q65353_NPVAC/172-346:0.29778):0.10397):0.19789):0.03924,(Q99315_YEAST/630-797:0.31698,(((O81454_ARATH/135-304:0.18482,Q9ZQ09_ARATH/379-543:0.59323):0.27210,(Q9ZS84_LYCES/646-815:0.30040,Q9ZVK4_ARATH/504-669:0.42170):0.11616):0.08990,RT21_SCHPO/446-615:0.57000):0.14320):0.08252):0.13263):0.11717):0.20397):0.18003):0.21775):0.71632,DPOL_HPBDC/385-564:0.49453):0.54872,O71304_9HEPA/355-590:0.15048):0.21769,(DPOL_HPBGS/404-636:0.14143,DPOL_WHV59/407-639:0.22635):0.36973):0.10905,DPOL_HPBV4/366-600:0.18501,Q69590_HPBV0/63-297:0.14272);