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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00078 phylogeny
for nucleotide alignment


 
(((((((((((RT16_MYXXA/177-407,RT65_MYXXA/146-366),(Q05804_ECOLI/35-235,((Q46666_ECOLI/25-241,Q47526_ECOLI/25-239),((RT67_ECOLI/39-262,RT86_ECOLI/44-248),P71276_ECOLI/53-269)))),(YKFC_ECOLI/77-332,(((((O85869_SPHAR/80-369,O85879_SPHAR/38-327),(((((((LTRA_LACLA/81-361,(AI1M_YEAST/306-577,(O47500_VENIN/317-590,YMC6_SCHPO/291-566))),Q02718_PODAN/251-530),Q02717_PODAN/239-528),Q33759_ALLMA/257-536),YMF40_MARPO/59-333),O99479_PAVLU/102-389),((Q35057_MARPO/535-811,Q35056_MARPO/390-645),Q35058_MARPO/614-898))),(O52231_STRPN/59-275,P95451_PSEAC/110-326)),((O82894_ECO57/106-332,((O99969_PORPU/91-315,O99970_PORPU/91-315),Q08724_9CYAN/99-336)),Q44225_9NOST/18-215)),((O69788_RHIME/63-291,Q47277_ECOLI/59-288),O52209_9ZZZZ/126-366)))),(O01419_BOMMO/493-756,(((((Q26816_9TRYP/536-793,Q9YGS2_FUGRU/564-830),(Q08525_CHICK/546-775,(((Q17003_ANOGA/596-832,((O16587_CAEEL/771-970,O16615_CAEEL/9-170),((O17305_CAEEL/424-636,(O76601_CAEEL/700-951,Q20175_CAEEL/524-775)),O16610_CAEEL/355-567))),(Q9YW31_MSEPV/152-406,Q24690_DROTE/486-742)),((((Q04135_DROME/487-743,Q24335_DROME/489-745),(RTJK_DROFU/493-757,RTJK_DROME/493-757)),(O96546_LYMDI/517-780,Q93137_BOMMO/506-771)),Q07995_9DIPT/500-760)))),(((((O44316_DROMR/385-650,POLR_DROME/394-660),(O16589_CAEEL/416-647,O45384_CAEEL/431-703)),((((POL2_MOUSE/515-780,O62658_CANFA/508-773),O93520_ORYLA/509-771),YTX2_XENLA/504-765),(((((((O65244_ARATH/396-664,O82216_ARATH/229-497),(O81068_ARATH/805-1073,Q9ZQQ6_ARATH/650-918)),Q9ZUF0_ARATH/655-923),O64612_ARATH/779-1031),((O65598_ARATH/480-747,O81517_ARATH/399-666),O81284_ARATH/49-317)),((O22148_ARATH/488-727,(O22220_ARATH/212-456,Q9ZQF8_ARATH/430-674)),(O81630_ARATH/865-1114,Q9ZQM0_ARATH/314-569))),(O23410_ARATH/299-553,O82276_ARATH/347-618)))),O64428_CHLVU/545-816),(O13348_MAGGR/488-764,Q01379_NEUCR/496-761))),O18558_AEDAE/463-725),(Q93139_BOMMO/460-719,Y2R2_DROME/489-741)))),RTP2_TRYBG/585-780),((((O92815_9RETR/802-976,POL_GALV/209-390),(POL_BLVAU/32-212,(POL_HTL1A/58-238,POL_HTLV2/143-323))),(Q83013_9RETR/59-238,(POL_RSVP/52-230,(POK10_HUMAN/67-245,POL_SRV1/65-243)))),((((O96849_DICDI/44-215,Q26106_PANRE/37-203),((((POL_RTBVP/1219-1390,Q89703_9VIRU/241-413),((POL_SOCMV/237-411,Q84682_9VIRU/225-395),((POL_CERV/262-436,POL_FMVD/273-445),Q88442_9VIRU/312-485))),((Q66233_9VIRU/1315-1494,O72700_9VIRU/1270-1449),(POL_COYMV/1436-1615,Q86998_9VIRU/1288-1467))),(((POL4_DROME/348-523,P91581_CIOIN/474-644),(POLY_DROME/215-390,Q65353_NPVAC/172-346)),((Q17329_CAEEL/1062-1231,(((Q9ZQ67_ARATH/533-701,Q9ZQQ3_ARATH/499-668),(Q9ZNW4_SORBI/913-1081,Q9ZTP2_MAIZE/347-516)),((Q9ZS84_LYCES/646-815,(Q9ZVK4_ARATH/504-669,(O81454_ARATH/135-304,Q9ZQ09_ARATH/379-543))),(Q99315_YEAST/630-797,RT21_SCHPO/446-615)))),(((Q24262_DROME/522-692,Q94885_DROME/750-920),O17342_CAEEL/378-547),(Q24310_DROME/491-649,O42691_ALTAL/27-202)))))),(((O93209_9RETR/193-360,O41894_9RETR/193-360),POL_SFV1/208-375),Q88285_9RETR/839-1015)),((((((POL_FIVT2/209-388,POL_HV1MA/208-388),(POL_SIVA1/245-425,POL_SIVAI/248-428)),POL_SIVGB/218-398),POL_HV2KR/237-417),Q03261_SIVCZ/237-416),Q82851_9RETR/589-766)))),POL_IPMAI/8-159),DPOL_HPBDC/385-564),(DPOL_HPBGS/404-636,DPOL_WHV59/407-639)),O71304_9HEPA/355-590),DPOL_HPBV4/366-600,Q69590_HPBV0/63-297);
(((((((((((RT16_MYXXA/177-407:0.25549,RT65_MYXXA/146-366:0.29925):0.13390,(Q05804_ECOLI/35-235:0.35739,((Q46666_ECOLI/25-241:0.28538,Q47526_ECOLI/25-239:0.44173):0.41387,((RT67_ECOLI/39-262:0.51778,RT86_ECOLI/44-248:0.46132):0.13929,P71276_ECOLI/53-269:0.60830):0.12801):0.13992):0.26132):0.34072,(YKFC_ECOLI/77-332:0.37776,(((((O85869_SPHAR/80-369:0.24099,O85879_SPHAR/38-327:0.18668):0.11063,(((((((LTRA_LACLA/81-361:0.41162,(AI1M_YEAST/306-577:0.39170,(O47500_VENIN/317-590:0.35160,YMC6_SCHPO/291-566:0.30257):0.09065):0.08568):0.06501,Q02718_PODAN/251-530:0.23914):0.11165,Q02717_PODAN/239-528:0.33150):0.05431,Q33759_ALLMA/257-536:0.36600):0.05520,YMF40_MARPO/59-333:0.31090):0.09168,O99479_PAVLU/102-389:0.60000):0.08282,((Q35057_MARPO/535-811:0.53575,Q35056_MARPO/390-645:0.44601):0.08094,Q35058_MARPO/614-898:0.58345):0.11036):0.12087):0.13833,(O52231_STRPN/59-275:0.46084,P95451_PSEAC/110-326:0.34247):0.19279):0.06316,((O82894_ECO57/106-332:0.44473,((O99969_PORPU/91-315:0.15165,O99970_PORPU/91-315:0.19446):0.26711,Q08724_9CYAN/99-336:0.27512):0.24060):0.09408,Q44225_9NOST/18-215:0.81243):0.16201):0.03320,((O69788_RHIME/63-291:0.26698,Q47277_ECOLI/59-288:0.24839):0.26553,O52209_9ZZZZ/126-366:0.38912):0.12039):0.08103):0.18059):0.14921,(O01419_BOMMO/493-756:0.48836,(((((Q26816_9TRYP/536-793:0.51494,Q9YGS2_FUGRU/564-830:0.63642):0.11883,(Q08525_CHICK/546-775:0.52688,(((Q17003_ANOGA/596-832:0.57673,((O16587_CAEEL/771-970:0.51738,O16615_CAEEL/9-170:0.60656):0.31013,((O17305_CAEEL/424-636:0.44906,(O76601_CAEEL/700-951:0.23360,Q20175_CAEEL/524-775:0.23200):0.08463):0.03289,O16610_CAEEL/355-567:0.44154):0.15745):0.09191):0.09060,(Q9YW31_MSEPV/152-406:0.60541,Q24690_DROTE/486-742:0.53941):0.15789):0.17568,((((Q04135_DROME/487-743:0.20279,Q24335_DROME/489-745:0.22360):0.29404,(RTJK_DROFU/493-757:0.19315,RTJK_DROME/493-757:0.18290):0.22852):0.16163,(O96546_LYMDI/517-780:0.27872,Q93137_BOMMO/506-771:0.36582):0.18105):0.09424,Q07995_9DIPT/500-760:0.40655):0.11093):0.09867):0.11653):0.06438,(((((O44316_DROMR/385-650:0.11412,POLR_DROME/394-660:0.24168):0.54596,(O16589_CAEEL/416-647:1.12714,O45384_CAEEL/431-703:0.01297):0.54812):0.09483,((((POL2_MOUSE/515-780:0.18365,O62658_CANFA/508-773:0.23747):0.27635,O93520_ORYLA/509-771:0.42750):0.12613,YTX2_XENLA/504-765:0.59187):0.08310,(((((((O65244_ARATH/396-664:0.14996,O82216_ARATH/229-497:0.19660):0.09738,(O81068_ARATH/805-1073:0.11236,Q9ZQQ6_ARATH/650-918:0.31644):0.10128):0.05056,Q9ZUF0_ARATH/655-923:0.22218):0.05757,O64612_ARATH/779-1031:0.27038):0.10251,((O65598_ARATH/480-747:0.24209,O81517_ARATH/399-666:0.20687):0.21172,O81284_ARATH/49-317:0.40303):0.07115):0.17194,((O22148_ARATH/488-727:0.37180,(O22220_ARATH/212-456:0.25157,Q9ZQF8_ARATH/430-674:0.31079):0.09598):0.06700,(O81630_ARATH/865-1114:0.43070,Q9ZQM0_ARATH/314-569:0.33315):0.07513):0.27759):0.07716,(O23410_ARATH/299-553:0.25637,O82276_ARATH/347-618:0.20774):0.32802):0.17536):0.11993):0.10707,O64428_CHLVU/545-816:0.67646):0.09183,(O13348_MAGGR/488-764:0.63093,Q01379_NEUCR/496-761:0.44453):0.13492):0.07138):0.11153,O18558_AEDAE/463-725:0.68443):0.06592,(Q93139_BOMMO/460-719:0.54092,Y2R2_DROME/489-741:0.49261):0.18980):0.09244):0.07953):0.23872,RTP2_TRYBG/585-780:0.59496):0.35781,((((O92815_9RETR/802-976:0.48469,POL_GALV/209-390:0.48600):0.12336,(POL_BLVAU/32-212:0.42119,(POL_HTL1A/58-238:0.20736,POL_HTLV2/143-323:0.18043):0.16810):0.11907):0.20427,(Q83013_9RETR/59-238:0.30821,(POL_RSVP/52-230:0.39108,(POK10_HUMAN/67-245:0.23566,POL_SRV1/65-243:0.40585):0.12898):0.07977):0.13461):0.06794,((((O96849_DICDI/44-215:0.46060,Q26106_PANRE/37-203:0.71732):0.39178,((((POL_RTBVP/1219-1390:0.37255,Q89703_9VIRU/241-413:0.27124):0.09682,((POL_SOCMV/237-411:0.24698,Q84682_9VIRU/225-395:0.27299):0.06839,((POL_CERV/262-436:0.23655,POL_FMVD/273-445:0.21850):0.12091,Q88442_9VIRU/312-485:0.26863):0.10929):0.08368):0.12441,((Q66233_9VIRU/1315-1494:0.30291,O72700_9VIRU/1270-1449:0.15385):0.06860,(POL_COYMV/1436-1615:0.22673,Q86998_9VIRU/1288-1467:0.20900):0.05207):0.23712):0.13246,(((POL4_DROME/348-523:0.45592,P91581_CIOIN/474-644:0.59784):0.05541,(POLY_DROME/215-390:0.46735,Q65353_NPVAC/172-346:0.33354):0.07779):0.09405,((Q17329_CAEEL/1062-1231:0.48831,(((Q9ZQ67_ARATH/533-701:0.21622,Q9ZQQ3_ARATH/499-668:0.19606):0.19991,(Q9ZNW4_SORBI/913-1081:0.26881,Q9ZTP2_MAIZE/347-516:0.24661):0.10990):0.32178,((Q9ZS84_LYCES/646-815:0.31065,(Q9ZVK4_ARATH/504-669:0.35180,(O81454_ARATH/135-304:0.20002,Q9ZQ09_ARATH/379-543:0.41471):0.18547):0.03263):0.11915,(Q99315_YEAST/630-797:0.34295,RT21_SCHPO/446-615:0.46113):0.09381):0.05147):0.04875):0.03976,(((Q24262_DROME/522-692:0.42801,Q94885_DROME/750-920:0.33766):0.06888,O17342_CAEEL/378-547:0.49788):0.06019,(Q24310_DROME/491-649:0.59572,O42691_ALTAL/27-202:0.62245):0.14709):0.08415):0.09268):0.03191):0.11847):0.12160,(((O93209_9RETR/193-360:0.20730,O41894_9RETR/193-360:0.23985):0.04276,POL_SFV1/208-375:0.16669):0.32040,Q88285_9RETR/839-1015:0.62439):0.08023):0.17585,((((((POL_FIVT2/209-388:0.25893,POL_HV1MA/208-388:0.19736):0.03728,(POL_SIVA1/245-425:0.20256,POL_SIVAI/248-428:0.15906):0.15526):0.04170,POL_SIVGB/218-398:0.24680):0.04265,POL_HV2KR/237-417:0.21250):0.08123,Q03261_SIVCZ/237-416:0.25201):0.11196,Q82851_9RETR/589-766:0.27678):0.16516):0.13490):0.12855):0.15630,POL_IPMAI/8-159:0.51964):0.55348,DPOL_HPBDC/385-564:0.35654):0.27244,(DPOL_HPBGS/404-636:0.13918,DPOL_WHV59/407-639:0.13262):0.17528):0.09375,O71304_9HEPA/355-590:0.14618):0.13410,DPOL_HPBV4/366-600:0.11172,Q69590_HPBV0/63-297:0.10155);