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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00078 phylogeny
for amino acid alignment


 
(((((((((P71276_ECOLI/53-269,((RT86_ECOLI/44-248,(RT67_ECOLI/39-262,(RT16_MYXXA/177-407,RT65_MYXXA/146-366))),(Q05804_ECOLI/35-235,(Q46666_ECOLI/25-241,Q47526_ECOLI/25-239)))),((((O69788_RHIME/63-291,Q47277_ECOLI/59-288),O52209_9ZZZZ/126-366),(((Q44225_9NOST/18-215,RDPO_SCEOB/115-343),O82894_ECO57/106-332),((O99969_PORPU/91-315,O99970_PORPU/91-315),Q08724_9CYAN/99-336))),(((Q35056_MARPO/390-645,YKFC_ECOLI/77-332),(((((Q02717_PODAN/239-528,YMF40_MARPO/59-333),(Q02718_PODAN/251-530,Q33759_ALLMA/257-536)),(O85869_SPHAR/80-369,O85879_SPHAR/38-327)),LTRA_LACLA/81-361),(((Q35058_MARPO/614-898,O99479_PAVLU/102-389),(Q35057_MARPO/535-811,Q35062_MARPO/360-636)),((AI1M_YEAST/306-577,AI2M_YEAST/274-548),(O47500_VENIN/317-590,YMC6_SCHPO/291-566))))),(O52231_STRPN/59-275,P95451_PSEAC/110-326)))),(O16589_CAEEL/416-647,((((((((Q04135_DROME/487-743,Q24335_DROME/489-745),(RTJK_DROFU/493-757,RTJK_DROME/493-757)),(O96546_LYMDI/517-780,Q93137_BOMMO/506-771)),Q07995_9DIPT/500-760),(((O16587_CAEEL/771-970,O16615_CAEEL/9-170),(O17305_CAEEL/424-636,(Q20175_CAEEL/524-775,(O76601_CAEEL/700-951,(O16610_CAEEL/355-567,Q17506_CAEEL/461-644))))),(Q08525_CHICK/546-775,Q17003_ANOGA/596-832))),((O13348_MAGGR/488-764,Q01379_NEUCR/496-761),((O01419_BOMMO/493-756,O18558_AEDAE/463-725),(Q93139_BOMMO/460-719,Y2R2_DROME/489-741)))),((Q9YGS2_FUGRU/564-830,Q24690_DROTE/486-742),Q26816_9TRYP/536-793)),((O45384_CAEEL/431-703,Q9YW31_MSEPV/152-406),((O44316_DROMR/385-650,POLR_DROME/394-660),(((O64428_CHLVU/545-816,YTX2_XENLA/504-765),((POL2_MOUSE/515-780,(O62658_CANFA/508-773,(LIN1_NYCCO/507-772,LIN1_HUMAN/507-772))),O93520_ORYLA/509-771)),(((O23410_ARATH/299-553,O82276_ARATH/347-618),(O81630_ARATH/865-1114,((O22148_ARATH/488-727,Q9ZQM0_ARATH/314-569),(O22220_ARATH/212-456,Q9ZQF8_ARATH/430-674)))),((O65598_ARATH/480-747,O81517_ARATH/399-666),(O81284_ARATH/49-317,((O64612_ARATH/779-1031,Q9ZUF0_ARATH/655-923),((O65244_ARATH/396-664,O82216_ARATH/229-497),(O81068_ARATH/805-1073,Q9ZQQ6_ARATH/650-918)))))))))))),RTP2_TRYBG/585-780),((((((POL_HV1MA/208-388,POL_SIVGB/218-398),(POL_HV2KR/237-417,((POL_SIVA1/245-425,POL_SIVAI/248-428),Q03261_SIVCZ/237-416))),((POL_EIAV9/240-419,POL_FIVT2/209-388),POL_CAEVC/201-380)),(POL_BIV06/210-387,Q82851_9RETR/589-766)),(((POL_BLVAU/32-212,(POL_HTL1A/58-238,POL_HTLV2/143-323)),((O92815_9RETR/802-976,(((O93209_9RETR/193-360,O41894_9RETR/193-360),POL_SFV1/208-375),Q88285_9RETR/839-1015)),(POL_GALV/209-390,(POL_BAEVM/210-391,POL_MLVAV/212-393)))),((POL_RSVP/52-230,((POK10_HUMAN/67-245,(POL_MMTVB/59-237,(POL_JSRV/65-243,(POL_SMRVH/62-240,POL_SRV1/65-243)))),((POL_IPMAI/8-159,POL_IPMA/62-240),POL_IPHA/51-229))),Q83013_9RETR/59-238))),((O96849_DICDI/44-215,Q26106_PANRE/37-203),(Q24310_DROME/491-649,((Q17329_CAEEL/1062-1231,(O42691_ALTAL/27-202,(((POL_SOCMV/237-411,Q84682_9VIRU/225-395),(((POL_FMVD/273-445,POL_CERV/262-436),POL_CAMVC/280-452),Q88442_9VIRU/312-485)),((POL_RTBVP/1219-1390,(Q66233_9VIRU/1315-1494,((O72700_9VIRU/1270-1449,POL_COYMV/1436-1615),Q86998_9VIRU/1288-1467))),Q89703_9VIRU/241-413)))),(((((P91581_CIOIN/474-644,(O17342_CAEEL/378-547,YRD6_CAEEL/475-644)),(Q24262_DROME/522-692,Q94885_DROME/750-920)),((Q9ZQ67_ARATH/533-701,Q9ZQQ3_ARATH/499-668),(Q9ZNW4_SORBI/913-1081,Q9ZTP2_MAIZE/347-516))),(POL4_DROME/348-523,(POLY_DROME/215-390,(POL2_DROME/240-414,Q65353_NPVAC/172-346)))),((((Q9ZS84_LYCES/646-815,Q9ZVK4_ARATH/504-669),(O81454_ARATH/135-304,Q9ZQ09_ARATH/379-543)),RT21_SCHPO/446-615),Q99315_YEAST/630-797))))))),DPOL_HPBDC/385-564),O71304_9HEPA/355-590),(DPOL_HPBGS/404-636,DPOL_WHV59/407-639)),DPOL_HPBV4/366-600,Q69590_HPBV0/63-297);
(((((((((P71276_ECOLI/53-269:0.93565,((RT86_ECOLI/44-248:0.57196,(RT67_ECOLI/39-262:0.73242,(RT16_MYXXA/177-407:0.42363,RT65_MYXXA/146-366:0.40779):0.25647):0.15640):0.22317,(Q05804_ECOLI/35-235:0.48986,(Q46666_ECOLI/25-241:0.39239,Q47526_ECOLI/25-239:0.45042):0.65228):0.08497):0.27620):0.63066,((((O69788_RHIME/63-291:0.37694,Q47277_ECOLI/59-288:0.21784):0.49632,O52209_9ZZZZ/126-366:0.58259):0.17880,(((Q44225_9NOST/18-215:1.30747,RDPO_SCEOB/115-343:0.50989):0.19020,O82894_ECO57/106-332:0.43177):0.16581,((O99969_PORPU/91-315:0.12192,O99970_PORPU/91-315:0.19859):0.33345,Q08724_9CYAN/99-336:0.31942):0.19462):0.15651):0.08934,(((Q35056_MARPO/390-645:0.65062,YKFC_ECOLI/77-332:0.50319):0.15177,(((((Q02717_PODAN/239-528:0.34973,YMF40_MARPO/59-333:0.28577):0.09703,(Q02718_PODAN/251-530:0.23452,Q33759_ALLMA/257-536:0.32930):0.09809):0.14339,(O85869_SPHAR/80-369:0.15141,O85879_SPHAR/38-327:0.26171):0.23693):0.01517,LTRA_LACLA/81-361:0.50063):0.08613,(((Q35058_MARPO/614-898:0.89086,O99479_PAVLU/102-389:0.66285):0.10542,(Q35057_MARPO/535-811:0.74236,Q35062_MARPO/360-636:0.58937):0.17536):0.04399,((AI1M_YEAST/306-577:0.37010,AI2M_YEAST/274-548:0.30523):0.25628,(O47500_VENIN/317-590:0.30079,YMC6_SCHPO/291-566:0.28418):0.25812):0.09112):0.10809):0.13326):0.15701,(O52231_STRPN/59-275:0.36726,P95451_PSEAC/110-326:0.40753):0.36857):0.11054):0.35478):0.27449,(O16589_CAEEL/416-647:4.10127,((((((((Q04135_DROME/487-743:0.18036,Q24335_DROME/489-745:0.19089):0.36717,(RTJK_DROFU/493-757:0.18082,RTJK_DROME/493-757:0.12201):0.40106):0.19423,(O96546_LYMDI/517-780:0.24987,Q93137_BOMMO/506-771:0.43058):0.25352):0.11314,Q07995_9DIPT/500-760:0.53395):0.27385,(((O16587_CAEEL/771-970:0.78459,O16615_CAEEL/9-170:0.85039):0.53565,(O17305_CAEEL/424-636:0.55749,(Q20175_CAEEL/524-775:0.15705,(O76601_CAEEL/700-951:0.23327,(O16610_CAEEL/355-567:0.49197,Q17506_CAEEL/461-644:0.56905):0.16101):0.03946):0.11449):0.13442):0.25475,(Q08525_CHICK/546-775:0.67604,Q17003_ANOGA/596-832:0.74633):0.22049):0.26065):0.10356,((O13348_MAGGR/488-764:0.91383,Q01379_NEUCR/496-761:0.62311):0.28710,((O01419_BOMMO/493-756:0.83809,O18558_AEDAE/463-725:0.76923):0.08127,(Q93139_BOMMO/460-719:0.71025,Y2R2_DROME/489-741:0.67415):0.19702):0.21336):0.07924):0.08252,((Q9YGS2_FUGRU/564-830:0.74933,Q24690_DROTE/486-742:0.87118):0.07842,Q26816_9TRYP/536-793:0.86294):0.08093):0.14021,((O45384_CAEEL/431-703:0.82125,Q9YW31_MSEPV/152-406:0.80869):0.24561,((O44316_DROMR/385-650:0.14518,POLR_DROME/394-660:0.19953):0.88253,(((O64428_CHLVU/545-816:1.00673,YTX2_XENLA/504-765:0.68118):0.11609,((POL2_MOUSE/515-780:0.14515,(O62658_CANFA/508-773:0.14637,(LIN1_NYCCO/507-772:0.15852,LIN1_HUMAN/507-772:0.16838):0.03158):0.09720):0.35302,O93520_ORYLA/509-771:0.53044):0.22398):0.10017,(((O23410_ARATH/299-553:0.22030,O82276_ARATH/347-618:0.05994):0.42804,(O81630_ARATH/865-1114:0.46157,((O22148_ARATH/488-727:0.38130,Q9ZQM0_ARATH/314-569:0.46552):0.11694,(O22220_ARATH/212-456:0.28024,Q9ZQF8_ARATH/430-674:0.34285):0.08990):0.10782):0.36307):0.15800,((O65598_ARATH/480-747:0.18034,O81517_ARATH/399-666:0.18665):0.23786,(O81284_ARATH/49-317:0.51801,((O64612_ARATH/779-1031:0.26846,Q9ZUF0_ARATH/655-923:0.16461):0.03904,((O65244_ARATH/396-664:0.07906,O82216_ARATH/229-497:0.11143):0.11294,(O81068_ARATH/805-1073:0.02947,Q9ZQQ6_ARATH/650-918:0.27333):0.11088):0.06362):0.19301):0.06021):0.28070):0.39833):0.14697):0.11330):0.17346):0.14794):0.23461):0.21290,RTP2_TRYBG/585-780:1.14481):0.54146,((((((POL_HV1MA/208-388:0.23431,POL_SIVGB/218-398:0.23440):0.05818,(POL_HV2KR/237-417:0.24741,((POL_SIVA1/245-425:0.13184,POL_SIVAI/248-428:0.13682):0.19389,Q03261_SIVCZ/237-416:0.31736):0.08800):0.02073):0.08738,((POL_EIAV9/240-419:0.32181,POL_FIVT2/209-388:0.22106):0.06543,POL_CAEVC/201-380:0.44070):0.06216):0.08487,(POL_BIV06/210-387:0.14877,Q82851_9RETR/589-766:0.12163):0.27963):0.37606,(((POL_BLVAU/32-212:0.44373,(POL_HTL1A/58-238:0.18895,POL_HTLV2/143-323:0.10570):0.20809):0.20859,((O92815_9RETR/802-976:0.39338,(((O93209_9RETR/193-360:0.17923,O41894_9RETR/193-360:0.17669):0.10159,POL_SFV1/208-375:0.06166):0.64403,Q88285_9RETR/839-1015:0.67365):0.19204):0.17584,(POL_GALV/209-390:0.09204,(POL_BAEVM/210-391:0.14783,POL_MLVAV/212-393:0.13490):0.04207):0.44876):0.29961):0.14411,((POL_RSVP/52-230:0.34268,((POK10_HUMAN/67-245:0.28346,(POL_MMTVB/59-237:0.31496,(POL_JSRV/65-243:0.23852,(POL_SMRVH/62-240:0.29737,POL_SRV1/65-243:0.16336):0.09729):0.09719):0.13276):0.15256,((POL_IPMAI/8-159:0.57356,POL_IPMA/62-240:0.00000):0.14180,POL_IPHA/51-229:0.11328):0.25200):0.12459):0.12237,Q83013_9RETR/59-238:0.35583):0.27828):0.07455):0.14921,((O96849_DICDI/44-215:0.60358,Q26106_PANRE/37-203:1.31161):0.47571,(Q24310_DROME/491-649:1.02255,((Q17329_CAEEL/1062-1231:0.59604,(O42691_ALTAL/27-202:0.88886,(((POL_SOCMV/237-411:0.19940,Q84682_9VIRU/225-395:0.31895):0.15118,(((POL_FMVD/273-445:0.18590,POL_CERV/262-436:0.15374):0.08835,POL_CAMVC/280-452:0.07819):0.17060,Q88442_9VIRU/312-485:0.24049):0.09149):0.08862,((POL_RTBVP/1219-1390:0.52663,(Q66233_9VIRU/1315-1494:0.14777,((O72700_9VIRU/1270-1449:0.09939,POL_COYMV/1436-1615:0.18554):0.03948,Q86998_9VIRU/1288-1467:0.16951):0.06438):0.29991):0.13422,Q89703_9VIRU/241-413:0.48907):0.09538):0.27354):0.08935):0.02188,(((((P91581_CIOIN/474-644:0.79986,(O17342_CAEEL/378-547:0.20911,YRD6_CAEEL/475-644:0.26552):0.52367):0.12347,(Q24262_DROME/522-692:0.59170,Q94885_DROME/750-920:0.34226):0.18224):0.10623,((Q9ZQ67_ARATH/533-701:0.16851,Q9ZQQ3_ARATH/499-668:0.15293):0.26053,(Q9ZNW4_SORBI/913-1081:0.25458,Q9ZTP2_MAIZE/347-516:0.18545):0.11400):0.44446):0.05421,(POL4_DROME/348-523:0.57063,(POLY_DROME/215-390:0.52747,(POL2_DROME/240-414:0.21810,Q65353_NPVAC/172-346:0.25491):0.11504):0.06603):0.22314):0.04558,((((Q9ZS84_LYCES/646-815:0.30291,Q9ZVK4_ARATH/504-669:0.41754):0.10665,(O81454_ARATH/135-304:0.18503,Q9ZQ09_ARATH/379-543:0.59253):0.28122):0.08563,RT21_SCHPO/446-615:0.57544):0.13488,Q99315_YEAST/630-797:0.33344):0.09081):0.14872):0.15574):0.15621):0.17992):0.27348):0.63625,DPOL_HPBDC/385-564:0.49457):0.54597,O71304_9HEPA/355-590:0.14574):0.22200,(DPOL_HPBGS/404-636:0.14217,DPOL_WHV59/407-639:0.22542):0.37020):0.10795,DPOL_HPBV4/366-600:0.18531,Q69590_HPBV0/63-297:0.14226);