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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00061 phylogeny
for restricted amino acid alignment


 
((((((((((A1AG_RAT/41-180,(A1AG1_MUSCR/41-181,A1AG3_MOUSE/40-180)),((A1AG2_HUMAN/40-180,Q29014_PIG/20-160),A1AG_RABIT/40-180)),(((((EXFAB_CHICK/31-171,Q8UWH4_CHICK/47-188),(Q8QFM7_CHICK/35-178,((LIPO_BUFMA/34-177,Q91721_XENLA/35-178),((PGHD_MOUSE/40-184,(((PGHD_BOVIN/40-184,PGHD_PIG/38-182),PGHD_FELCA/40-184),(PGHD_HUMAN/40-184,Q9N2C2_RABIT/40-184))),((NGAL_MOUSE/48-195,NGAL_HUMAN/48-193),Q9D265_MOUSE/4-149))))),((CO8G_HUMAN/48-186,((((AMBP_MOUSE/40-185,(AMBP_HUMAN/41-186,O70160_CAVPO/41-186)),AMBP_BOVIN/41-186),P70004_XENLA/40-184),(AMBP_PLEPL/43-187,Q91484_SALSA/40-185))),Q8QGV4_BRARE/34-178)),((O88787_MOUSE/13-153,Q924P3_MOUSE/33-163),(O93588_LACVV/29-161,O93589_LACVV/25-158))),((((Q63613_RAT/31-169,Q8K1H9_MOUSE/31-170),(((VEGP_HUMAN/32-169,(VEGP1_RAT/31-170,(ALL1_CANFA/32-167,VEGP_PIG/33-169))),((LLPA_MACEU/30-169,LLP_TRIVU/30-169),LLPB_MACEU/29-167)),OBP2B_HUMAN/26-164)),VNS2_MOUSE/33-170),((((PAEP_HUMAN/34-175,O77511_PAPCY/34-181),(O97877_FELCA/9-150,(LACB_BOVIN/32-173,LACB_PIG/34-173))),LACB_TRIVU/34-169),((Q28388_HORSE/34-173,(ALL2_CANFA/34-173,TRIC_TRIVU/39-178)),((((MUP_RAT/35-174,(MUP4_MOUSE/32-171,(MUP2_MOUSE/34-173,MUP3_MOUSE/38-177))),(SAL_PIG/35-174,ALL1_HORSE/34-174)),(((((OBP_RAT/29-168,Q9D3N5_MOUSE/29-169),Q99MG7_MESAU/29-168),(APHR_CRICR/23-163,P97336_MOUSE/3-143)),((PBAS_MOUSE/27-166,PBAS_RAT/29-168),ALL2_BOVIN/29-168)),Q8HZN2_ELEMA/15-155)),MUPL_MOUSE/34-174)))))),((((FABP1_MANSE/4-132,FABP2_MANSE/3-131),((((FABPM_LOCMI/5-133,Q8IGA2_DROME/16-142),Q8WR15_METEN/5-135),(O61236_MANSE/4-132,FABP_BLOTA/4-130)),((((FABP1_ECHGR/5-132,FABP2_ECHGR/5-132),((FABP_CLOSI/5-133,(FABP3_FASHE/5-132,FABP1_FASGI/4-131)),FABP_SCHJA/5-132)),((FABP9_CAEEL/23-151,FABP7_CAEEL/8-137),(((((MYP2_HUMAN/5-131,(TLBP_MOUSE/6-132,Q9DAK4_MOUSE/6-132)),FABPE_BOVIN/8-134),(FABPA_RAT/5-131,Q8QHA8_9AVES/6-132)),O57663_9PERC/6-133),((FABPB_HUMAN/5-131,((Q90W92_FUNHE/6-132,Q9I896_ANGJA/8-134),(O57667_CHAAC/6-132,FABPH_ONCMY/5-131))),FABPH_PIG/5-131)))),(((RET5_HUMAN/5-133,((RET2_HUMAN/5-133,Q8UVG6_BRARE/6-134),RET7_HUMAN/6-134)),(RET3_FUGRU/4-136,RET3_XENLA/4-137)),((Q8AX65_BRARE/4-132,FABPI_XENLA/3-131),(FABPI_HUMAN/3-131,FABPI_MOUSE/3-131)))))),((((ILBP_RABIT/3-126,ILBP_RAT/3-126),(Q90WA9_CHICK/4-127,(FABPL_MOUSE/4-127,(FABP_FUGRU/4-125,Q8JJ04_EPICO/4-127)))),(FABPL_ANOPU/3-125,FABPL_CHICK/3-125)),Q9U6H2_MYXGL/6-128)),OLFA_RANPI/32-172)),((RETB_XENLA/41-191,Q9I901_SPAAU/39-189),PURP_CHICK/41-193)),((Q8T118_SAMCR/39-185,(Q00629_MANSE/41-189,((Q24996_GALME/38-184,BBP_PIEBR/38-182),Q95P97_BOMMO/38-184))),Q8T119_SAMCR/37-183)),LAZA_SCHAM/43-188),(Q8SXR1_DROME/48-190,Q8T5Q9_HYPCU/38-182)),APOD_HUMAN/43-184),APOD_CAVPO/43-184,APOD_RAT/43-184);
((((((((((A1AG_RAT/41-180:0.18509,(A1AG1_MUSCR/41-181:0.06746,A1AG3_MOUSE/40-180:0.21674):0.16084):0.14665,((A1AG2_HUMAN/40-180:0.25030,Q29014_PIG/20-160:0.38653):0.05297,A1AG_RABIT/40-180:0.36449):0.27910):1.61849,(((((EXFAB_CHICK/31-171:0.86256,Q8UWH4_CHICK/47-188:0.64272):0.26796,(Q8QFM7_CHICK/35-178:0.27207,((LIPO_BUFMA/34-177:0.10928,Q91721_XENLA/35-178:0.18508):0.22577,((PGHD_MOUSE/40-184:0.16089,(((PGHD_BOVIN/40-184:0.07067,PGHD_PIG/38-182:0.19677):0.06046,PGHD_FELCA/40-184:0.11897):0.13151,(PGHD_HUMAN/40-184:0.05072,Q9N2C2_RABIT/40-184:0.19889):0.03066):0.05647):0.30921,((NGAL_MOUSE/48-195:0.24011,NGAL_HUMAN/48-193:0.26700):0.35427,Q9D265_MOUSE/4-149:0.78389):0.49868):0.21790):0.01385):0.22008):0.09164,((CO8G_HUMAN/48-186:1.21269,((((AMBP_MOUSE/40-185:0.15573,(AMBP_HUMAN/41-186:0.05927,O70160_CAVPO/41-186:0.21140):0.03535):0.10410,AMBP_BOVIN/41-186:0.12376):0.40383,P70004_XENLA/40-184:0.30096):0.13022,(AMBP_PLEPL/43-187:0.35646,Q91484_SALSA/40-185:0.12430):0.39750):0.33782):0.12638,Q8QGV4_BRARE/34-178:0.61898):0.10119):0.23276,((O88787_MOUSE/13-153:0.84236,Q924P3_MOUSE/33-163:1.10002):0.28641,(O93588_LACVV/29-161:0.02632,O93589_LACVV/25-158:0.30825):0.71130):0.41441):0.10046,((((Q63613_RAT/31-169:0.34139,Q8K1H9_MOUSE/31-170:0.53448):0.08165,(((VEGP_HUMAN/32-169:0.21317,(VEGP1_RAT/31-170:0.37423,(ALL1_CANFA/32-167:0.25399,VEGP_PIG/33-169:0.22777):0.11247):0.05103):0.19457,((LLPA_MACEU/30-169:0.12971,LLP_TRIVU/30-169:0.16439):0.46330,LLPB_MACEU/29-167:0.31145):0.31248):0.20177,OBP2B_HUMAN/26-164:0.39841):0.12736):0.10835,VNS2_MOUSE/33-170:0.78823):0.62480,((((PAEP_HUMAN/34-175:0.41257,O77511_PAPCY/34-181:0.25074):0.08397,(O97877_FELCA/9-150:0.23440,(LACB_BOVIN/32-173:0.17091,LACB_PIG/34-173:0.28018):0.13678):0.09889):0.23769,LACB_TRIVU/34-169:0.79737):0.69097,((Q28388_HORSE/34-173:0.59836,(ALL2_CANFA/34-173:0.71486,TRIC_TRIVU/39-178:0.59268):0.27972):0.13714,((((MUP_RAT/35-174:0.23239,(MUP4_MOUSE/32-171:0.06687,(MUP2_MOUSE/34-173:0.19513,MUP3_MOUSE/38-177:0.22898):0.04129):0.07307):0.10005,(SAL_PIG/35-174:0.22532,ALL1_HORSE/34-174:0.27445):0.16289):0.20842,(((((OBP_RAT/29-168:0.20507,Q9D3N5_MOUSE/29-169:0.19063):0.14132,Q99MG7_MESAU/29-168:0.26385):0.28233,(APHR_CRICR/23-163:0.41550,P97336_MOUSE/3-143:0.46609):0.27422):0.16935,((PBAS_MOUSE/27-166:0.13581,PBAS_RAT/29-168:0.12824):0.65507,ALL2_BOVIN/29-168:0.70457):0.02659):0.21926,Q8HZN2_ELEMA/15-155:0.57017):0.71896):0.11606,MUPL_MOUSE/34-174:0.64001):0.11841):0.15794):0.25049):0.15016):0.02703):0.22003,((((FABP1_MANSE/4-132:0.48312,FABP2_MANSE/3-131:0.20470):0.84583,((((FABPM_LOCMI/5-133:0.45659,Q8IGA2_DROME/16-142:0.16764):0.10609,Q8WR15_METEN/5-135:0.34475):0.05145,(O61236_MANSE/4-132:0.36056,FABP_BLOTA/4-130:0.51717):0.05928):0.04472,((((FABP1_ECHGR/5-132:0.12701,FABP2_ECHGR/5-132:0.15705):0.53397,((FABP_CLOSI/5-133:0.41319,(FABP3_FASHE/5-132:0.08536,FABP1_FASGI/4-131:0.35745):0.33630):0.04669,FABP_SCHJA/5-132:0.33823):0.20420):0.12117,((FABP9_CAEEL/23-151:0.49864,FABP7_CAEEL/8-137:0.63861):0.14461,(((((MYP2_HUMAN/5-131:0.15802,(TLBP_MOUSE/6-132:0.36163,Q9DAK4_MOUSE/6-132:0.26089):0.03933):0.07833,FABPE_BOVIN/8-134:0.43183):0.04862,(FABPA_RAT/5-131:0.17785,Q8QHA8_9AVES/6-132:0.15524):0.05026):0.10336,O57663_9PERC/6-133:0.35826):0.03901,((FABPB_HUMAN/5-131:0.22842,((Q90W92_FUNHE/6-132:0.05609,Q9I896_ANGJA/8-134:0.20064):0.06472,(O57667_CHAAC/6-132:0.15235,FABPH_ONCMY/5-131:0.12325):0.02286):0.08515):0.03820,FABPH_PIG/5-131:0.19205):0.07340):0.06098):0.16027):0.05429,(((RET5_HUMAN/5-133:0.55973,((RET2_HUMAN/5-133:0.16111,Q8UVG6_BRARE/6-134:0.14479):0.17515,RET7_HUMAN/6-134:0.24812):0.06057):0.40903,(RET3_FUGRU/4-136:0.17107,RET3_XENLA/4-137:0.13352):0.26006):0.12720,((Q8AX65_BRARE/4-132:0.23893,FABPI_XENLA/3-131:0.19818):0.02607,(FABPI_HUMAN/3-131:0.11051,FABPI_MOUSE/3-131:0.15959):0.07544):0.72288):0.09568):0.01999):0.15730):0.19124,((((ILBP_RABIT/3-126:0.16788,ILBP_RAT/3-126:0.12715):0.38118,(Q90WA9_CHICK/4-127:0.10557,(FABPL_MOUSE/4-127:0.18013,(FABP_FUGRU/4-125:0.19068,Q8JJ04_EPICO/4-127:0.13394):0.14464):0.07319):0.29337):0.13330,(FABPL_ANOPU/3-125:0.16019,FABPL_CHICK/3-125:0.16943):0.36891):0.16179,Q9U6H2_MYXGL/6-128:0.70033):0.15335):2.26361,OLFA_RANPI/32-172:0.70111):0.68300):0.90760,((RETB_XENLA/41-191:0.34932,Q9I901_SPAAU/39-189:0.33063):0.45070,PURP_CHICK/41-193:0.02247):0.96384):0.45503,((Q8T118_SAMCR/39-185:0.32961,(Q00629_MANSE/41-189:0.55179,((Q24996_GALME/38-184:0.12821,BBP_PIEBR/38-182:0.61126):0.08967,Q95P97_BOMMO/38-184:0.15275):0.21699):0.08417):0.19234,Q8T119_SAMCR/37-183:0.48526):0.71532):0.07433,LAZA_SCHAM/43-188:0.83524):0.18877,(Q8SXR1_DROME/48-190:0.46138,Q8T5Q9_HYPCU/38-182:1.19642):0.30390):0.44882,APOD_HUMAN/43-184:0.11268):0.09322,APOD_CAVPO/43-184:0.11434,APOD_RAT/43-184:0.14828);