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Protein and Associated NucleotideDomains with Inferred Trees
(View raw data for PF00060 - Lig_chan)
Ligand-gated ion channel
(Pfam reference: accession no. PF00060)
(Interpro reference: accession no. IPR001320)


sequences alignment phylogeny
amino acids
(Pfam-A seed alignment)
51 sequences @ 425 aa
(ave. pairwise identity: 0.28)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 28.84)
nucleotides
(available for above)
43 sequences @ 1275 bp
(ave. pairwise identity: 0.42)
New Hampshire format
(total tree length: 51.24)
amino acids, restricted set
(corresp. to available nt seqs)
43 sequences @ 425 aa
(ave. pairwise identity: 0.28)
New Hampshire format
(total tree length: 26.30)