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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00047 alignment
(89 sequences with 93 aa)


Q31499_ONCMY/211-278 TPSSPVTCHAT...GFYPSGVMVFWQKDGQeQHgDVEHG.EILQNDDGTFQKs...................tHLTVTPEEWK.-NNKYQCVV
1A01_GORGO/220-285 DHEAILRCWAL...SFYPAEITLTWQRDGEdQTqDTELV.ETRPAGDGTFQK.....................-WAAVVVPSG.QEQRYTCHV
Q31463_MORSA/126-191 KHPSMLVCSVY...DFFPKHIRVSWLRDGQeVTsDVTST.DELADADWFYQI.....................-HSHLEYTPR.SGEKISCVV
Q31377_CYPCA/123-188 SRPAVLVCSAY...DFYPKKIKVSWLRDGKeMTsDVTST.MEMADGDWFYQI.....................-HSELEYTPK.SGEKISCMV
Q31340_AGEPH/114-179 PGPDRLLCSVM...DFYPAAIQVRWFQGQQeLSeHVVAT.DVVPNGDWTYQL.....................-LVLLETPPR.RGLTYSCQV
Q31312_APHCE/113-178 ANPGRLLCSVM...DFYPAEIQLRWFQGHQeLSvHVVPT.DIVPNGDWTYQL.....................-LVLLEIPPQ.LGVSYTCQV
HB21_HUMAN/142-207 NHHNLLVCSVT...DFYPAQIKVRWFRNDQeETaGVVST.PLIRNGDWTFQI.....................-LVMLEMTPQ.RGDVYTCHV
Q31362_BRARE/125-190 DIENKLICHVT...GFFPPPVRVSWTKNNEiVTeGMSVS.QYRPNNDGTYNI.....................-FSTLRFTPV.EGDIYSCSV
2DMB_HUMAN/128-194 REPVMLACYVW...GFYPAEVTITWRKNGKlVMpHSSAHkTAQPNGDWTYQT.....................-LSHLALTPS.YGDTYTCVV
HA21_HUMAN/126-191 GQPNTLICLVD...NIFPPVVNITWLSNGHsVTeGVSET.SFLSKSDHSFFK.....................-ISYLTFLPS.ADEIYDCKV
DTC_RAT/93-162 QMSSWLMCEVS...GFYPEDIHLWWLSAQTkMDpINFVTaQPVRQSGDKFQIw...................sVLRLPVALSP.SLDTYTCVV
2DMA_HUMAN/140-204 GKPNTLVCFVS...NLFPPMLTVNWHDHSVpVEgFGPTF.VSAVDGLSFQA-.....................-FSYLNFTPE.PSDIFSCIV
B2MG_BRAAR/38-102 GKPNFLNSYVS...GFHPSDIEVDLLKNGKkIEkVEHSD.LSFSKDWSFYL-.....................-LYYTEFTPN.EKDEYACRV
PVR_CERAE/259-314 QNEATLTCDAR...-SNPEPTGYNWSTTMGpLPpFAVAQ.GAQ---------.....................-LLIRPVDKP.INTTFICNV
HVC1_HETFR/160-223 EATVTLTCVVS...-NAPYGVNVSWTQEQKpLKsEIAVQ.PGEDPDSVIST-.....................-VDISTQAWL.SEAVFYCVV
IGHA1_GORGO/243-315 NELVTLTCLAR...GFSPKDVLVRWLQGSQeLPrEKYLT.WASRQEPSQGTTtfa...............vtsILRVAAEDWK.KGDTFSCMV
MUCB_HUMAN/282-353 RESATITCLVT...GFSPADVFVQWMQRGQpLSpEKYVT.SAPMPEPQAPGRyfa................hsILTVSEEEWN.TGETYTCVV
GCBM_MOUSE/248-315 RKDVSLTCLVV...GFNPGDISVEWTSNGHtEEnYKDTA.PVLDSDGSYFIYs....................KLNMKTSKWE.KTDSFSCNV
EPC_MOUSE/219-287 NGAPKLTCLVVd..LESEKNVNVTWNQEKKtSVsASQWY.TKHHNNATTSITs....................ILPVVAKDWI.EGYGYQCIV
CD48_MOUSE/144-195 SCHLRLSCEV-...--KDQHVDYTWYESSGpFPkKSPGY.V-----------.....................-LDLIVTPQN.KSTFYTCQV
GC1M_MOUSE/20-84 NSMVTLGCLVK...GYFPEPVTVTWNSGSLsSGvHTFPA.VLQSDLYTLS--.....................-SSVTVPSSPrPSETVTCNV
O57349_CHICK/131-195 EGRVTLSCYTQ...-GCKPQPQITWLLDNGiQLpGDTRH.KLEADGKKWTTT.....................-STLTVLAYG.PNSTATCLV
O46819_TRISC/205-269 GDSKKLSCVAT...GFYPQSIELKLHRDQAaADvPYSSG.VRPNHDGTYQM-.....................-EKQTDFEPS.DPAKFSCEV
MUCM_RABIT/21-92 GNLVAMGCLAR...DFLPSSVTFSWSFKNNsEIsSRTVR.TFPVVKRGDKYMats................qvLVPSKDVLQG.TEEYLVCKV
PTP2_CAEEL/62-132 TQLALVNCSP-...--NGVTFQNYWKLSKHvVQlDILAD.SSRQWWVSDGRYqlir..............pfyTLRVSPVTPE.DSGTYRCRL
P79988_CHICK/35-116 NNSTEIVCPM-...--KGEHTGVYWYRWNQgRQhFEFLL.FSSPLGKATYGTnisqekfsi...rgtssyhsyRLHINRLHGS.DNGTYYCCT
SEM3E_MOUSE/595-656 SNSTLLECTP-...--RSLQAKVIWFVQKGrDVrKEEVK.TDDRVVKMDLG-.....................-LLFLRVRKS.DAGTYFCQT
FCGR1_MOUSE/214-271 GSLVTLNCETNlllQRPGLQLHFSFYVGSKiLEyRNTSS.E-----------.....................-YHIARAERE.DAGFYWCEV
CEAM1_HUMAN/341-398 KDSVNLTCST-...--NDTGISIRWFFKNQsLPsSERMK.LSQGNTT-----.....................-LSINPVKRE.DAGTYWCEV
CD4_MOUSE/35-114 GESAELPCES-...-SQKKITVFTWKFSDQrKIlGQHGK.GVLIRGGSPSQFdrfdskkg......awekgsfPLIINKLKME.DSQTYICEL
OPCM_RAT/237-298 GQKGILSCEA-...-SAVPMAEFQWFKEDTrLAtGLDGV.RIENKGRIST--.....................-LTFFNVSEK.DYGNYTCVA
PECA1_HUMAN/340-388 GERLNLSCSI-...-PGAPPANFTIQKEDTiVSqTQDFT.KIASKS------.....................----------.DSGTYICTA
FAS2_SCHAM/149-205 NETFKIRCRV-...-SANPPAIVNWMRDGHiVEtGDRYV.VEQDG-------.....................-LTILNVTEM.DDGTYTCRA
MYLK_CHICK/1098-1158 GEKLVLQCRI-...-SSDPPASVSWTLDSKaIKsSKSIV.ISQEGTLCS---.....................-LTIEKVMPE.DGGEYKCIA
L1CAM_HUMAN/257-314 GQPLVLECIA-...-EGFPTPTIKWLRPSGpMPaDRVTY.QNHNKT------.....................-LQLLKVGEE.DDGEYRCLA
MYPC2_CHICK/1052-1112 GYTVTLNCAV-...-RGHPKPKVTWLKNSVeIGaDPKFL.SRHGLGVLS---.....................-LLIRRPGPF.DGGTYGCRA
PGDR_HUMAN/47-102 SSTFVLTCSG-...-----SAPVVWERMSQePPqEMAKA.QDGTFSSV----.....................-LTLTNLTGL.DTGEYFCTH
OX2G_RAT/44-123 HTTASLRCSLK...-TTQEPLIVTWQKKKAvGPeNMVTY.SKAHGVVIQPTYkdrinit.......elgllntSITFWNTTLD.DEGCYMCLF
V055_FOWPV/41-108 GSDINLTCFIKddqGAGEDKVIVAWQQGDGeVTqGIKTT.WDTTRQVGQTM-.....................-LHISKVSKE.AEGSYMCVV
CD8A_MOUSE/46-131 GQKVDLVCEV-...-LGSVSQGCSWLFQNSsSKlPQPTF.VVYMASSHNKITwdeklnssklfsamrdtnnkyVLTLNKFSKE.NEGYYFCSV
L1CAM_HUMAN/532-593 GSRVTFTCQAS...FDPSLQPSITWRGDGRdLQeLGDSD.KYFIEDGR----.....................-LVIHSLDYS.DQGNYSCVA
NCAM1_BOVIN/321-396 EEQVTLTCEA-...-SGDPIPSITWRTSTRnISsEEKAS.WTRPEKQETLDGhmvvrs..........harvsSLTLKSIQYT.DAGEYVCTA
VCAM1_HUMAN/239-293 GGSVTMTCSS-...-EGLPAPEIFWSKKLDnGNlQHLSG.NAT---------.....................-LTLIAMRME.DSGIYVCEG
CNTFR_HUMAN/39-91 GSDVTLPCGT-...--ANWDAAVTWRVNGTdLApDLLNG.SQ----------.....................-LVLHGLELG.HSGLYACFH
IL6RA_MOUSE/40-94 GATVTLICPGK...-EAAGNVTIHWVYSGSqNReWTTTG.NT----------.....................-LVLRDVQLS.DTGDYLCSL
FGFR1_CHICK/47-102 GDLLQLRCRL-...--RDDVQSINWVRDGVqLPeNNRTR.ITGEE-------.....................-VEVRDAVPE.DSGLYACMT
FCGR1_HUMAN/36-87 EETVTLHCEVL...-HLPGSSSTQWFLNGTaTQtSTPS-.------------.....................-YRITSASVN.DSGEYRCQR
KIT_HUMAN/226-292 GEEFTVTCTIK...-DVSSSVYSTWKRENSqTKlQEKYN.SWHHGDFNYERQa....................TLTISSARVN.DSGVFMCYA
HEMO_HYACE/245-307 GDVTMIYCMY-...-GSNPMGYPNYFKNGKdVNgNPEDR.ITRHNRTSGKR-.....................-LLFKTTLPE.DEGVYTCEV
CD22_HUMAN/346-398 GSQVEFLCMSL...-ANPLPTNYTWYHNGKeMQgRTEEK.------------.....................-VHIPKILPW.HAGTYSCVA
LAR_DROME/50-113 GGVASFYCAA-...-RGDPPPSIVWRKNGKkVSgTQSRY.TVLEQPGGISI-.....................-LRIEPVRAGrDDAPYECVA
CD22_HUMAN/522-573 GNSVSLQCDFS...SSHPKEVQFFWEKNGRlLGkESQ--.------------.....................-LNFDSISPE.DAGSYSCWV
PIGR_HUMAN/33-112 GNSVSITCYYPp..TSVNRHTRKYWCRQGArGGcITLIS.SEGYVSSKYAGRanltnf.........pengtfVVNIAQLSQD.DSGRYKCGL
NRG_DROME/535-596 GQSATFRCNEA...HDDTLEIEIDWWKDGQsIDfEAQPR.FVKTNDNS----.....................-LTIAKTMEL.DSGEYTCVA
NRG_DROME/261-319 GKRMELFCIY-...-GGTPLPQTVWSKDGQrIQwSDRIT.QGHYGKS-----.....................-LVIRQTNFD.DAGTYTCDV
BT1A1_BOVIN/43-126 GEDAELPCRLSp..NVSAKGMELRWFREKVsPAvFVSRE.GQEQEGEEMAEYrgrvslve.....dhiaegsvAVRIQEVKAS.DDGEYRCFF
CTLA4_MOUSE/51-131 HGVASFPCEYSp..SHNTDEVRVTVLRQTNdQMtEVCAT.TFTEKNTVGFLDypfcsgt........fnesrvNLTIQGLRAV.DTGLYLCKV
NCAM1_BOVIN/34-98 GESKFFLCQVA...-GDAKDKDISWFSPNGeKLtPNQQR.ISVVWNDDSSST.....................-LTIYNANID.DAGIYKCVV
CD33_HUMAN/156-214 GHSKNLTCSVSw.aCEQGTPPIFSWLSAAPtSLgPRTTH.SSV---------.....................-LIITPRPQD.HGTNLTCQV
MUC_CHICK/230-298 SKSATLTCRVSn..MVNADGLEVSWWKEKGgKLeTALGK.RVLQSNGLYTVDg....................VATVCASEWD.GGDGYVCKV
SCN1B_HUMAN/33-123 GMTFKILCISCkrrSETNAETFTEWTFRQKgTEeFVKIL.RYENEVLQLEEDerfegrvvwngsrgtkdlqdlSIFITNVTYN.HSGDYECHV
FLT3_MOUSE/266-333 GEPLWIRCKAI...-HVNHGFGLTWELEDKaLEeGSYFE.MSTYSTNRTMIRi...................lLAFVSSVGRN.DTGYYTCSS
O57349_CHICK/32-101 GEDLNLRCTF-...-TGDSRATKQWLNPRGfTIfLDNHW.GLKDQRYRLIHYsed................elSIRLSNITVH.DEGVYKCYY
KI2S5_HUMAN/142-200 GESVTLSCSS-...--RSSYDMYHLSREGEaHErRLPAG.PKVNRTFQAD--.....................-SPLDPAT--.HGGAYRCFG
KI3L1_HUMAN/237-295 GESVTLSCSS-...--RSSYDMYHLSREGGaHErRLPAV.RKVNRTFQAD--.....................-FPLGPAT--.HGGTYRCFG
KI3L1_HUMAN/42-97 GGHVTLRCHY-...--RHRFNNFMLYKEDRiHIpIFHGR.IFQES-------.....................-FNMSPVTTA.HAGNYTCRG
KI2S5_HUMAN/42-102 EETVILQCWS-...--DVMFEHFLLHREGTfNHtLRLIG.EHIDGVSKGN--.....................-FSIGRMTQD.LAGTYRCYG
THY1_HUMAN/31-106 DQSLRLDCRHEn.tSSSPIQYEFSLTRETKkHVlFGTVG.VPEHTYRSRTNFtsky..............nmkVLYLSAFTSK.DEGTYTCAL
TIE1_MOUSE/363-426 GTMPRINCAAAg..NPFPVRGSMKLRKPDGtMLlSTKVI.VEPDRTTAE---.....................-FEVPSLTLG.DSGFWECRV
PIGR_RABIT/362-440 GGSVTIRCPYN...-PKRSDSHLQLYLWEGsQTrHLLVD.SGEGLVQKDYTGrlalfee........pgngtfSVVLNQLTAE.DEGFYWCVS
O60667_HUMAN/30-106 GGSVTIKCPL-...--PEMHVRIYLCREMAgSGtCGTVV.STTNFIKAEYKGrvtlkqy........prknlfLVEVTQLTES.DSGVYACGA
ICAM3_HUMAN/329-377 GSTVTVSCMA-...-GARVQVTLDGVPAAApGQpAQ---.------------.....................-LQLNATESD.DGRSFFCSA
KV01_RABIT/16-92 GGTVTISCQST...KSIYBBBYLAWYQZKPgQPpKALIY.TASSLASGVPSRftgsg...........sgt.fTLTLSDVZCD.DAATYYCGG
KV5H_MOUSE/38-112 GERVSLTCRA-...-SQDIHGYLNLFQQKPgETiKHLIY.ETSNLDSGVPKRfsgsr...........sgsdySLIIGSLESE.DFADYYCLQ
TVB4_MOUSE/38-115 GQKLTLKCQQ-...--NFNHDTMYWYRQDSgKGlRLIYY.SITENDLQKGDLsegydas.......rekkssfSLTVTSAQKN.EMTVFLCAS
HV1A_RABIT/14-93 TPGLTLTCTVS...GFSLSSYDMGWVRQAPgKGlEWIGI.IYASGSTYYASWakgrfti........sktsttVDLKTSLPTE.DTATYFCAR
HV1D_HUMAN/15-98 GSSVRVSCKTS...GGTFVDYKGLWVRQAPgKGlEWVGQ.IPLRFNGEVKNPgsvvrvsvs....lkpsfnqaHMELSSLFSE.DTAVYYCAR
TRKC_HUMAN/224-286 GDNAVITCNG-...-SGSPLPDVDWIVTGLqSInTHQTN.LNWTNVHAIN--.....................-LTLVNVTSEdNGFTLTCIA
Q09165_CAEEL/1832-1890 GSQMTIACNA-...-TGIPLPQVKWIKAGNyEIdPSRVD.ADGNHAQ-----.....................-FSLQVANIT.EDTTFNCVA
Q09165_CAEEL/1219-1266 LGAATITCTA-...-TGVPQPKVHWIKANGeTVdS----.------------.....................-ATLQLYDLV.KDTSATCVA
I1BP_CWPXB/235-311 GSNLTIACRVSl..RPPTTDADVFWISNGMyYEeDDEDG.DGRISVANKIYTtdkrr............vitsRLKINPVKEE.DATTFTCMA
IL1S_HUMAN/251-328 GSRLTIPCKVFl..GTGTPLTTMLWWTANDtHIeSAYPG.GRVTEGPRQEYSennen............yievPLIFDPVTREdLHMDFKCVV
Q09165_CAEEL/320-376 GGNINISCTS-...-VAYPFPDIYWFKNQKvNTdGPDQN.TLRA--------.....................-SQILIIKEIyRNEEFTCVS
DTC_HUMAN/183-251 RDKATFTCFVV...GSDLKDAHLTWEVAGKvPTgGVEEG.LLERHSNGSQSQh...................sRLTLPRSLWN.AGTSVTCTL
KFMS_FELCA/217-280 GEAAQIVCSAS...-NIDVNFDVSLRHGDTkLTiSQQSD.FHDNRYQKVLT-.....................-LNLDHVSFQ.DAGNYSCTA
OX2G_MOUSE/153-216 EDHLNITCSA-...-TARPAPAISWKGTGTgIEnSTESH.FHSNGTTSVTSI.....................-LRVKDPKTQ.VGKEVICQV
PTPRM_HUMAN/199-262 GQFATFQCSAI...-GRTVAGDRLWLQGIDvRDaPLKEI.KVTSSRRFIAS-.....................-FNVVNTTKR.DAGKYRCMI
GUNC_CELFI/934-989 GADATFTAEA-...-SGVPAPTVRWQVRAGrGWkDVAGA.TGTT--------.....................-LTVRATART.DGTRYRAVF
TIE1_MOUSE/137-195 GDTAVLSAHV-...-HKEKQTDVIWKNNGSyFNtLDWQE.ADDGRFQ-----.....................-LQLQNVQPP.SSGIYSATY