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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00047 phylogeny
for amino acid alignment


 
((((((((((MUCM_RABIT/21-92,TIE1_MOUSE/363-426),CD48_MOUSE/144-195),CTLA4_MOUSE/51-131),((((NRG_DROME/535-596,CD22_HUMAN/346-398),((((VCAM1_HUMAN/239-293,((((KV5H_MOUSE/38-112,KV01_RABIT/16-92),((O60667_HUMAN/30-106,PIGR_RABIT/362-440),PIGR_HUMAN/33-112)),((HV1D_HUMAN/15-98,HV1A_RABIT/14-93),PGDR_HUMAN/47-102)),(ICAM3_HUMAN/329-377,IL6RA_MOUSE/40-94))),((((Q09165_CAEEL/1219-1266,Q09165_CAEEL/1832-1890),IL1S_HUMAN/251-328),(O57349_CHICK/131-195,Q09165_CAEEL/320-376)),TRKC_HUMAN/224-286)),(((CNTFR_HUMAN/39-91,L1CAM_HUMAN/532-593),(NCAM1_BOVIN/321-396,GUNC_CELFI/934-989)),(LAR_DROME/50-113,(MYPC2_CHICK/1052-1112,L1CAM_HUMAN/257-314)))),(((NRG_DROME/261-319,HEMO_HYACE/245-307),(FAS2_SCHAM/149-205,(MYLK_CHICK/1098-1158,FGFR1_CHICK/47-102))),(PECA1_HUMAN/340-388,OPCM_RAT/237-298)))),(I1BP_CWPXB/235-311,((TIE1_MOUSE/137-195,KFMS_FELCA/217-280),CD22_HUMAN/522-573))),((CD8A_MOUSE/46-131,((CEAM1_HUMAN/341-398,((SEM3E_MOUSE/595-656,P79988_CHICK/35-116),FCGR1_MOUSE/214-271)),(CD4_MOUSE/35-114,PVR_CERAE/259-314))),((CD33_HUMAN/156-214,NCAM1_BOVIN/34-98),PTPRM_HUMAN/199-262)))),((((MUC_CHICK/230-298,EPC_MOUSE/219-287),((((Q31499_ONCMY/211-278,(1A01_GORGO/220-285,(DTC_RAT/93-162,((((HB21_HUMAN/142-207,(Q31312_APHCE/113-178,Q31340_AGEPH/114-179)),(Q31377_CYPCA/123-188,Q31463_MORSA/126-191)),2DMB_HUMAN/128-194),(Q31362_BRARE/125-190,(HA21_HUMAN/126-191,((B2MG_BRAAR/38-102,O46819_TRISC/205-269),2DMA_HUMAN/140-204))))))),GCBM_MOUSE/248-315),(GC1M_MOUSE/20-84,(MUCB_HUMAN/282-353,IGHA1_GORGO/243-315))),DTC_HUMAN/183-251)),HVC1_HETFR/160-223),FLT3_MOUSE/266-333)),(PTP2_CAEEL/62-132,((V055_FOWPV/41-108,OX2G_RAT/44-123),((KIT_HUMAN/226-292,TVB4_MOUSE/38-115),(((O57349_CHICK/32-101,BT1A1_BOVIN/43-126),SCN1B_HUMAN/33-123),(FCGR1_HUMAN/36-87,OX2G_MOUSE/153-216)))))),THY1_HUMAN/31-106),KI3L1_HUMAN/42-97),KI2S5_HUMAN/42-102),KI3L1_HUMAN/237-295,KI2S5_HUMAN/142-200);
((((((((((MUCM_RABIT/21-92:1.76285,TIE1_MOUSE/363-426:1.00579):0.49433,CD48_MOUSE/144-195:1.39043):0.32631,CTLA4_MOUSE/51-131:1.31290):0.32188,((((NRG_DROME/535-596:0.72732,CD22_HUMAN/346-398:0.83305):0.29285,((((VCAM1_HUMAN/239-293:0.81017,((((KV5H_MOUSE/38-112:0.64468,KV01_RABIT/16-92:0.27886):0.48351,((O60667_HUMAN/30-106:0.50250,PIGR_RABIT/362-440:1.14917):0.41577,PIGR_HUMAN/33-112:0.65058):0.48205):0.16573,((HV1D_HUMAN/15-98:0.56033,HV1A_RABIT/14-93:0.74778):0.49963,PGDR_HUMAN/47-102:1.05022):0.27193):0.15126,(ICAM3_HUMAN/329-377:0.83036,IL6RA_MOUSE/40-94:1.03932):0.15013):0.33250):0.25359,((((Q09165_CAEEL/1219-1266:0.58805,Q09165_CAEEL/1832-1890:0.37054):0.23911,IL1S_HUMAN/251-328:1.55385):0.16271,(O57349_CHICK/131-195:1.22983,Q09165_CAEEL/320-376:0.80198):0.44389):0.14741,TRKC_HUMAN/224-286:0.68989):0.29510):0.29299,(((CNTFR_HUMAN/39-91:1.13659,L1CAM_HUMAN/532-593:0.54359):0.39103,(NCAM1_BOVIN/321-396:0.55988,GUNC_CELFI/934-989:1.39141):0.00000):0.31699,(LAR_DROME/50-113:0.95167,(MYPC2_CHICK/1052-1112:0.90351,L1CAM_HUMAN/257-314:0.92325):0.17339):0.20091):0.00000):0.09634,(((NRG_DROME/261-319:0.58552,HEMO_HYACE/245-307:1.02033):0.49870,(FAS2_SCHAM/149-205:0.58267,(MYLK_CHICK/1098-1158:0.46963,FGFR1_CHICK/47-102:0.99186):0.00000):0.24281):0.18169,(PECA1_HUMAN/340-388:0.40866,OPCM_RAT/237-298:0.69972):0.43141):0.13360):0.20547):0.00331,(I1BP_CWPXB/235-311:1.19388,((TIE1_MOUSE/137-195:0.90696,KFMS_FELCA/217-280:0.76161):0.41845,CD22_HUMAN/522-573:0.53627):0.09893):0.13987):0.10265,((CD8A_MOUSE/46-131:1.28960,((CEAM1_HUMAN/341-398:0.37797,((SEM3E_MOUSE/595-656:0.98433,P79988_CHICK/35-116:1.08763):0.43021,FCGR1_MOUSE/214-271:0.97640):0.19116):0.24151,(CD4_MOUSE/35-114:0.79949,PVR_CERAE/259-314:1.21604):0.33903):0.00577):0.18880,((CD33_HUMAN/156-214:1.44871,NCAM1_BOVIN/34-98:0.47139):0.13441,PTPRM_HUMAN/199-262:1.69148):0.35596):0.02873):0.03720):0.08924,((((MUC_CHICK/230-298:1.03715,EPC_MOUSE/219-287:0.61293):0.30316,((((Q31499_ONCMY/211-278:0.52583,(1A01_GORGO/220-285:0.82495,(DTC_RAT/93-162:1.34779,((((HB21_HUMAN/142-207:0.23052,(Q31312_APHCE/113-178:0.12860,Q31340_AGEPH/114-179:0.14181):0.41318):0.26566,(Q31377_CYPCA/123-188:0.23316,Q31463_MORSA/126-191:0.07149):0.38055):0.17059,2DMB_HUMAN/128-194:0.46271):0.04407,(Q31362_BRARE/125-190:0.52775,(HA21_HUMAN/126-191:0.69720,((B2MG_BRAAR/38-102:0.35261,O46819_TRISC/205-269:1.40115):0.41445,2DMA_HUMAN/140-204:0.85559):0.31279):0.12793):0.28734):0.13771):0.25162):0.24120):0.23236,GCBM_MOUSE/248-315:1.08090):0.20066,(GC1M_MOUSE/20-84:1.50191,(MUCB_HUMAN/282-353:0.34966,IGHA1_GORGO/243-315:0.44294):0.24586):0.10117):0.09271,DTC_HUMAN/183-251:1.30652):0.10828):0.10002,HVC1_HETFR/160-223:0.97881):0.26109,FLT3_MOUSE/266-333:1.61166):0.00000):0.07054,(PTP2_CAEEL/62-132:1.40365,((V055_FOWPV/41-108:0.77114,OX2G_RAT/44-123:1.01005):0.27823,((KIT_HUMAN/226-292:0.40207,TVB4_MOUSE/38-115:1.31304):0.27842,(((O57349_CHICK/32-101:1.01689,BT1A1_BOVIN/43-126:0.88889):0.27892,SCN1B_HUMAN/33-123:1.30384):0.33392,(FCGR1_HUMAN/36-87:0.55283,OX2G_MOUSE/153-216:1.39558):0.31528):0.31461):0.33191):0.03296):0.31500):0.46390,THY1_HUMAN/31-106:0.94335):0.53292,KI3L1_HUMAN/42-97:0.61707):0.50935,KI2S5_HUMAN/42-102:0.86447):0.54446,KI3L1_HUMAN/237-295:0.03959,KI2S5_HUMAN/142-200:0.07923);