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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00041 phylogeny
for restricted amino acid alignment


 
(((((PTP6_DROME/236-321,(((TIE1_HUMAN/545-632,((((((KALM_CHICK/177-269,TIE2_HUMAN/543-626),(IL7RA_HUMAN/129-221,PTP6_DROME/332-425)),(NRCAM_CHICK/726-810,(NGCA_CHICK/700-794,NRG_DROME/717-799))),((PTPRK_MOUSE/290-376,TIE1_HUMAN/446-533),TIE2_HUMAN/444-529)),(((((NRCAM_CHICK/623-709,CNTN2_CHICK/602-692),MYLK_CHICK/1318-1403),(MPSF_CHICK/699-785,((MYPC2_CHICK/923-1008,MYPC2_CHICK/630-716),((MPSF_CHICK/371-457,MPSF_CHICK/801-887),(MPSF_CHICK/600-684,MPSF_CHICK/499-585))))),((EPA1_HUMAN/333-431,EPA2_HUMAN/329-420),EPA3_CHICK/325-421)),(LAR_DROME/322-404,((APU_THETY/928-1009,(APU_THETY/1165-1248,((CHIT_STRLI/142-219,(GUNB_CELFI/651-733,CHI1_BACCI/465-542)),(CHIX_STROI/169-240,PHB_ALCFA/344-418)))),LAR_DROME/515-598)))),((((((TENA_CHICK/593-671,TENA_CHICK/864-945),TENA_CHICK/1317-1395),(TENA_CHICK/956-1033,((TENA_CHICK/774-853,TENA_CHICK/1406-1483),TENA_CHICK/1494-1571))),FINC_RAT/1266-1346),(((PTPB_HUMAN/1261-1344,PTP1_DROME/864-944),(((PTPB_HUMAN/467-543,PTP1_DROME/217-301),(((((PTPB_HUMAN/554-632,PTPB_HUMAN/995-1074),(PTPB_HUMAN/643-725,PTPB_HUMAN/731-808)),PTPB_HUMAN/907-984),PTPB_HUMAN/112-192),(PTPB_HUMAN/1085-1162,PTPB_HUMAN/1173-1250))),((PTP1_DROME/312-394,PTP1_DROME/405-485),PTPB_HUMAN/1355-1434))),(PTP1_DROME/123-205,PTP1_DROME/583-661))),(((TENA_CHICK/682-767,KALM_CHICK/543-641),(((((((EPA2_HUMAN/436-519,PTPZ_HUMAN/312-401),EPA4_MOUSE/441-525),(LAR_DROME/709-800,PTP9_DROME/171-259)),(LAR_DROME/417-503,((LAR_DROME/909-995,NRCAM_CHICK/928-1014),(((ITB4_HUMAN/1220-1310,ITB4_HUMAN/1641-1728),ITB4_HUMAN/1528-1612),TIE1_HUMAN/644-729)))),NRG_DROME/917-1007),(((NRG_DROME/815-905,L1CAM_HUMAN/812-907),(CNTN2_CHICK/807-896,CNTN1_CHICK/799-884)),ITB4_HUMAN/1127-1208)),7LES_DROME/1799-1891)),PTP1_DROME/958-1044)))),TIE2_HUMAN/639-724),PTPB_HUMAN/22-103)),7LES_DROVI/1917-1997),(TENA_CHICK/1136-1215,TENA_HUMAN/1529-1608)),TENA_CHICK/1227-1306),TENA_CHICK/1045-1124,TENA_HUMAN/1255-1335);
(((((PTP6_DROME/236-321:1.20166,(((TIE1_HUMAN/545-632:1.87529,((((((KALM_CHICK/177-269:1.37784,TIE2_HUMAN/543-626:0.95233):0.35240,(IL7RA_HUMAN/129-221:0.80885,PTP6_DROME/332-425:1.43426):0.10068):0.20792,(NRCAM_CHICK/726-810:0.29207,(NGCA_CHICK/700-794:0.64032,NRG_DROME/717-799:0.70995):0.28223):0.64619):0.07275,((PTPRK_MOUSE/290-376:0.63582,TIE1_HUMAN/446-533:0.92389):0.34771,TIE2_HUMAN/444-529:0.73752):0.34901):0.16372,(((((NRCAM_CHICK/623-709:0.89948,CNTN2_CHICK/602-692:0.70138):0.23875,MYLK_CHICK/1318-1403:0.88235):0.06507,(MPSF_CHICK/699-785:0.63346,((MYPC2_CHICK/923-1008:0.83633,MYPC2_CHICK/630-716:0.64265):0.19917,((MPSF_CHICK/371-457:0.56851,MPSF_CHICK/801-887:0.61259):0.28781,(MPSF_CHICK/600-684:0.95255,MPSF_CHICK/499-585:0.56377):0.18848):0.12447):0.12491):0.15045):0.05642,((EPA1_HUMAN/333-431:0.45616,EPA2_HUMAN/329-420:0.56362):0.28130,EPA3_CHICK/325-421:0.53704):0.68117):0.12407,(LAR_DROME/322-404:0.87370,((APU_THETY/928-1009:0.89313,(APU_THETY/1165-1248:0.86437,((CHIT_STRLI/142-219:0.28838,(GUNB_CELFI/651-733:0.51214,CHI1_BACCI/465-542:0.34286):0.13473):0.11069,(CHIX_STROI/169-240:0.38787,PHB_ALCFA/344-418:0.47605):0.11055):0.07285):0.21699):0.23289,LAR_DROME/515-598:0.74031):0.10411):0.16790):0.15127):0.04642,((((((TENA_CHICK/593-671:0.80039,TENA_CHICK/864-945:0.43149):0.12581,TENA_CHICK/1317-1395:0.81012):0.08083,(TENA_CHICK/956-1033:0.66595,((TENA_CHICK/774-853:0.81463,TENA_CHICK/1406-1483:0.60325):0.21218,TENA_CHICK/1494-1571:0.67209):0.12482):0.15009):0.00000,FINC_RAT/1266-1346:1.17535):0.35138,(((PTPB_HUMAN/1261-1344:0.94654,PTP1_DROME/864-944:0.77407):0.36646,(((PTPB_HUMAN/467-543:0.70107,PTP1_DROME/217-301:1.19465):0.15594,(((((PTPB_HUMAN/554-632:0.60306,PTPB_HUMAN/995-1074:0.67703):0.12695,(PTPB_HUMAN/643-725:0.34508,PTPB_HUMAN/731-808:0.37597):0.32990):0.12926,PTPB_HUMAN/907-984:0.68540):0.03506,PTPB_HUMAN/112-192:0.72438):0.18590,(PTPB_HUMAN/1085-1162:0.70967,PTPB_HUMAN/1173-1250:0.37327):0.34499):0.13652):0.28053,((PTP1_DROME/312-394:1.28025,PTP1_DROME/405-485:0.63647):0.27015,PTPB_HUMAN/1355-1434:1.08521):0.08580):0.14857):0.14618,(PTP1_DROME/123-205:0.94559,PTP1_DROME/583-661:0.58281):0.39863):0.27288):0.22985,(((TENA_CHICK/682-767:1.28805,KALM_CHICK/543-641:1.48849):0.18671,(((((((EPA2_HUMAN/436-519:0.62937,PTPZ_HUMAN/312-401:1.06573):0.21378,EPA4_MOUSE/441-525:0.92898):0.19499,(LAR_DROME/709-800:0.55023,PTP9_DROME/171-259:0.78807):0.19812):0.19555,(LAR_DROME/417-503:0.63951,((LAR_DROME/909-995:0.74897,NRCAM_CHICK/928-1014:0.77895):0.32988,(((ITB4_HUMAN/1220-1310:0.73769,ITB4_HUMAN/1641-1728:0.43425):0.06931,ITB4_HUMAN/1528-1612:0.68318):0.26917,TIE1_HUMAN/644-729:0.79992):0.18230):0.16939):0.10709):0.02639,NRG_DROME/917-1007:0.96294):0.04879,(((NRG_DROME/815-905:0.78965,L1CAM_HUMAN/812-907:0.73901):0.15782,(CNTN2_CHICK/807-896:0.56133,CNTN1_CHICK/799-884:0.52073):0.12899):0.13966,ITB4_HUMAN/1127-1208:0.93131):0.12723):0.04579,7LES_DROME/1799-1891:1.20359):0.05341):0.08193,PTP1_DROME/958-1044:1.66154):0.05301):0.03630):0.15904):0.03865,TIE2_HUMAN/639-724:0.80947):0.09274,PTPB_HUMAN/22-103:1.57100):0.00000):0.29293,7LES_DROVI/1917-1997:1.39478):0.47831,(TENA_CHICK/1136-1215:0.51859,TENA_HUMAN/1529-1608:0.64908):0.13669):0.07533,TENA_CHICK/1227-1306:0.47196):0.29918,TENA_CHICK/1045-1124:0.30625,TENA_HUMAN/1255-1335:0.44182);