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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00041 phylogeny
for nucleotide alignment


 
((((((((((((((((PTPRK_MOUSE/290-376,TIE2_HUMAN/444-529),TIE1_HUMAN/446-533),IL7RA_HUMAN/129-221),(NRCAM_CHICK/726-810,(NGCA_CHICK/700-794,NRG_DROME/717-799))),((MPSF_CHICK/699-785,((PTPB_HUMAN/22-103,TIE2_HUMAN/639-724),PTP6_DROME/236-321)),((MPSF_CHICK/371-457,MPSF_CHICK/499-585),MPSF_CHICK/801-887))),(PTPZ_HUMAN/312-401,LAR_DROME/709-800)),(((NRCAM_CHICK/623-709,PTP1_DROME/583-661),(MYPC2_CHICK/923-1008,MYPC2_CHICK/630-716)),(KALM_CHICK/177-269,MYLK_CHICK/1318-1403))),(((EPA1_HUMAN/333-431,EPA3_CHICK/325-421),EPA2_HUMAN/329-420),(((((((CNTN2_CHICK/807-896,(NRG_DROME/815-905,CNTN1_CHICK/799-884)),(LAR_DROME/909-995,NRCAM_CHICK/928-1014)),(EPA4_MOUSE/441-525,TIE1_HUMAN/644-729)),(7LES_DROME/1799-1891,(PTP1_DROME/958-1044,ITB4_HUMAN/1127-1208))),LAR_DROME/417-503),(((NRG_DROME/917-1007,LAR_DROME/515-598),((ITB4_HUMAN/1220-1310,ITB4_HUMAN/1641-1728),ITB4_HUMAN/1528-1612)),EPA2_HUMAN/436-519)),L1CAM_HUMAN/812-907))),((((PTP1_DROME/217-301,PTP1_DROME/123-205),((PTP1_DROME/405-485,((PTP1_DROME/312-394,TIE1_HUMAN/545-632),TENA_CHICK/682-767)),((PTPB_HUMAN/1355-1434,KALM_CHICK/543-641),PTP9_DROME/171-259))),((((TENA_CHICK/774-853,TENA_CHICK/956-1033),TENA_CHICK/1494-1571),((TENA_CHICK/864-945,((TENA_CHICK/593-671,FINC_RAT/1266-1346),TIE2_HUMAN/543-626)),(TENA_CHICK/1317-1395,CNTN2_CHICK/602-692))),(TENA_CHICK/1406-1483,PTP6_DROME/332-425))),7LES_DROVI/1917-1997)),(PTP1_DROME/864-944,(LAR_DROME/322-404,MPSF_CHICK/600-684))),(((GUNB_CELFI/651-733,CHI1_BACCI/465-542),CHIT_STRLI/142-219),(((APU_THETY/928-1009,APU_THETY/1165-1248),PHB_ALCFA/344-418),CHIX_STROI/169-240))),(((PTPB_HUMAN/907-984,(PTPB_HUMAN/1085-1162,PTPB_HUMAN/1173-1250)),((PTPB_HUMAN/112-192,(PTPB_HUMAN/995-1074,PTPB_HUMAN/467-543)),(PTPB_HUMAN/554-632,(PTPB_HUMAN/643-725,PTPB_HUMAN/731-808)))),PTPB_HUMAN/1261-1344)),TENA_HUMAN/1529-1608),TENA_CHICK/1136-1215),TENA_CHICK/1227-1306),TENA_CHICK/1045-1124,TENA_HUMAN/1255-1335);
((((((((((((((((PTPRK_MOUSE/290-376:0.45306,TIE2_HUMAN/444-529:0.58663):0.04532,TIE1_HUMAN/446-533:0.63337):0.20123,IL7RA_HUMAN/129-221:0.62546):0.06393,(NRCAM_CHICK/726-810:0.46649,(NGCA_CHICK/700-794:0.50086,NRG_DROME/717-799:0.39969):0.12604):0.23540):0.07360,((MPSF_CHICK/699-785:0.42400,((PTPB_HUMAN/22-103:0.62601,TIE2_HUMAN/639-724:0.52203):0.08207,PTP6_DROME/236-321:0.78312):0.10248):0.11544,((MPSF_CHICK/371-457:0.29605,MPSF_CHICK/499-585:0.54811):0.22578,MPSF_CHICK/801-887:0.23251):0.16306):0.17988):0.04901,(PTPZ_HUMAN/312-401:0.81975,LAR_DROME/709-800:0.19934):0.27233):0.13087,(((NRCAM_CHICK/623-709:0.81440,PTP1_DROME/583-661:0.52669):0.08735,(MYPC2_CHICK/923-1008:0.39404,MYPC2_CHICK/630-716:0.36284):0.19301):0.09613,(KALM_CHICK/177-269:0.79249,MYLK_CHICK/1318-1403:0.41062):0.26590):0.13235):0.05533,(((EPA1_HUMAN/333-431:0.43729,EPA3_CHICK/325-421:0.59807):0.13649,EPA2_HUMAN/329-420:0.30180):0.29967,(((((((CNTN2_CHICK/807-896:0.28033,(NRG_DROME/815-905:0.56088,CNTN1_CHICK/799-884:0.48330):0.13798):0.19236,(LAR_DROME/909-995:0.26239,NRCAM_CHICK/928-1014:0.71570):0.33894):0.01185,(EPA4_MOUSE/441-525:0.53704,TIE1_HUMAN/644-729:0.49436):0.16531):0.10057,(7LES_DROME/1799-1891:0.60704,(PTP1_DROME/958-1044:0.62087,ITB4_HUMAN/1127-1208:0.39163):0.09021):0.14146):0.03693,LAR_DROME/417-503:0.52962):0.09527,(((NRG_DROME/917-1007:0.39601,LAR_DROME/515-598:0.57986):0.17127,((ITB4_HUMAN/1220-1310:0.43843,ITB4_HUMAN/1641-1728:0.25742):0.07120,ITB4_HUMAN/1528-1612:0.43088):0.15623):0.05348,EPA2_HUMAN/436-519:0.51540):0.04172):0.09069,L1CAM_HUMAN/812-907:0.49785):0.02222):0.04793):0.05118,((((PTP1_DROME/217-301:0.45415,PTP1_DROME/123-205:0.62363):0.19729,((PTP1_DROME/405-485:0.68392,((PTP1_DROME/312-394:0.56974,TIE1_HUMAN/545-632:0.79301):0.30991,TENA_CHICK/682-767:0.65624):0.07264):0.08157,((PTPB_HUMAN/1355-1434:0.56526,KALM_CHICK/543-641:0.73429):0.26665,PTP9_DROME/171-259:0.32375):0.17500):0.13672):0.06089,((((TENA_CHICK/774-853:0.61017,TENA_CHICK/956-1033:0.43345):0.11492,TENA_CHICK/1494-1571:0.49604):0.05880,((TENA_CHICK/864-945:0.51615,((TENA_CHICK/593-671:0.32708,FINC_RAT/1266-1346:0.70590):0.11137,TIE2_HUMAN/543-626:0.64612):0.08336):0.07982,(TENA_CHICK/1317-1395:0.37204,CNTN2_CHICK/602-692:0.53921):0.25024):0.07248):0.09142,(TENA_CHICK/1406-1483:0.34640,PTP6_DROME/332-425:0.73156):0.13856):0.19419):0.01890,7LES_DROVI/1917-1997:0.99223):0.06772):0.09564,(PTP1_DROME/864-944:0.66171,(LAR_DROME/322-404:0.45049,MPSF_CHICK/600-684:0.64235):0.12032):0.06441):0.05113,(((GUNB_CELFI/651-733:0.32201,CHI1_BACCI/465-542:0.50187):0.06669,CHIT_STRLI/142-219:0.20842):0.04792,(((APU_THETY/928-1009:0.65371,APU_THETY/1165-1248:0.44854):0.38909,PHB_ALCFA/344-418:0.28192):0.08331,CHIX_STROI/169-240:0.26783):0.12043):0.18183):0.17772,(((PTPB_HUMAN/907-984:0.57845,(PTPB_HUMAN/1085-1162:0.55459,PTPB_HUMAN/1173-1250:0.30209):0.17223):0.04507,((PTPB_HUMAN/112-192:0.49573,(PTPB_HUMAN/995-1074:0.47466,PTPB_HUMAN/467-543:0.53095):0.13549):0.07323,(PTPB_HUMAN/554-632:0.39799,(PTPB_HUMAN/643-725:0.32392,PTPB_HUMAN/731-808:0.34808):0.23144):0.14826):0.07258):0.24058,PTPB_HUMAN/1261-1344:0.60908):0.16195):0.46247,TENA_HUMAN/1529-1608:0.31544):0.03525,TENA_CHICK/1136-1215:0.37010):0.07059,TENA_CHICK/1227-1306:0.39689):0.24019,TENA_CHICK/1045-1124:0.19726,TENA_HUMAN/1255-1335:0.30353);