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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00010 phylogeny
for restricted amino acid alignment


 
((((((((((((TWST_CAEEL/21-72,(TWST2_RAT/67-118,Q9GNV2_PODCA/52-103)),(Q24353_DROME/104-156,(Q24354_DROME/186-238,Q16509_HUMAN/188-240))),(((Q20561_CAEEL/42-94,Q9VEY3_DROME/156-206),Q9VGJ5_DROME/87-139),Q64305_RAT/163-215)),(((MUSC_HUMAN/108-160,O18374_DROME/32-84),Q9JLR5_MOUSE/76-128),SCX_MOUSE/79-131)),(((((O45320_CAEEL/41-95,((OLIG3_MOUSE/85-139,OLIG1_MOUSE/95-154),(O45489_CAEEL/50-101,BETA3_MESAU/229-283))),(MIST1_RAT/73-125,Q9VID2_DROME/157-209)),TAP_DROME/155-207),((Q9V7M2_DROME/104-156,O57598_CHICK/40-92),(ATO_DROME/256-308,AMOS_DROME/139-191))),(Q18612_CAEEL/24-78,(HAND1_CHICK/84-136,Q9VL05_DROME/59-111)))),(((Q9IAJ4_BRARE/88-142,(((O73624_XENLA/96-150,(O93439_CHICK/68-122,P97309_MOUSE/77-131)),Q9DEQ9_CHICK/96-150),Q9IB69_BRARE/67-121)),Q9VHG3_DROME/180-233),((((Q99NA2_MOUSE/232-284,Q9VPI8_DROME/274-326),HLH4_CAEEL/6-57),((Q91631_XENLA/8-61,DA_DROME/555-608),Q17588_CAEEL/303-357)),DEI_DROME/95-154))),((((((((Q9ZVB5_ARATH/62-114,Q9M1K0_ARATH/77-129),Q9FYE6_ARATH/66-118),(Q9SUB6_ARATH/12-64,(Q9FLI1_ARATH/2-54,(Q9LN89_ARATH/75-127,Q9LQ08_ARATH/74-126)))),(O82599_ARATH/113-176,((Q9FK20_ARATH/100-151,(Q9FKQ6_ARATH/100-151,Q9C7T4_ARATH/123-174)),Q9M270_ARATH/176-227))),(((((((BHLH2_MOUSE/54-108,Q9U450_DROME/63-118),(HEY1_CANFA/52-105,Q9U9U4_DROME/103-156)),(((((((ESM3_DROME/12-69,ESM7_DROME/14-69),(ESM8_DROHY/11-66,ESMD_DROME/16-73)),(Q90465_BRARE/17-73,Q9JHC5_MOUSE/19-75)),((HES2_HUMAN/14-71,(DPN_DROME/41-98,Q9VJ16_DROME/51-115)),Q91635_XENLA/35-92)),O16853_CAEEL/22-79),(Q9DEU7_BRARE/22-74,HES6_MOUSE/28-78)),(((((Q9DF73_BRARE/14-71,Q99JA6_MOUSE/13-70),Q9W7B6_XENLA/13-70),Q90463_BRARE/13-70),(Q90467_BRARE/7-64,Q9W7B5_XENLA/27-84)),((Q9PTN8_XENLA/21-75,(HES5_MOUSE/19-73,Q90466_BRARE/20-74)),Q9PTN9_XENLA/2-56)))),((((Q98SK3_BRARE/46-99,CYCL_DROME/31-84),BMAL1_HUMAN/73-126),Q9H2M4_HUMAN/74-127),(O44118_DROME/37-90,Q9VXW7_DROME/8-61))),((Q12398_YEAST/267-342,(O43019_SCHPO/427-496,Q9UUD1_SCHPO/261-333)),(((Q9XX00_CAEEL/356-406,Q24146_DROME/284-334),Q98SH5_CHICK/177-227),(Q92242_KLULA/180-254,TYE7_YEAST/181-266)))),((RTG1_YEAST/12-97,(MITF_HUMAN/312-365,RTG3_YEAST/286-345)),(Q06860_YEAST/251-307,NUC1_NEUCR/668-758))),(Q22069_CAEEL/14-64,Q19918_CAEEL/45-96))),((Q9CAA4_ARATH/46-96,Q9FMB6_ARATH/34-86),((((O23297_ARATH/125-176,Q9FH37_ARATH/72-123),Q9FN69_ARATH/438-487),Q9SZK7_ARATH/1318-1381),(Q9LYT0_ARATH/257-306,Q9SQ79_PINTA/477-526)))),((((Q25428_LYTVA/215-270,Q9W4J8_DROME/255-343),(ESC1_SCHPO/335-386,Q9H8R3_HUMAN/594-645)),((((MNT_HUMAN/221-272,O46042_DROME/262-315),(Q62912_RAT/58-110,(MAD4_HUMAN/54-106,(MAD_HUMAN/57-109,((Q21663_CAEEL/96-148,Q9NDP3_CIOIN/57-109),MXI1_HUMAN/68-120))))),TCFL5_HUMAN/353-406),((Q91421_ONCMY/311-364,((MYC_DROME/626-678,Q67004_FLV/282-334),(((MYCL_XENLA/262-314,MYCM_HUMAN/275-327),MYCL_HUMAN/282-334),(Q26649_STRPU/350-402,MYC_ASTVU/322-374)))),((Q18711_CAEEL/48-99,(Q14803_HUMAN/24-75,MAX_DROME/40-91)),P90982_CAEEL/30-83)))),((MLX_MOUSE/130-188,Q9GQP6_DROME/72-128),((WBS14_CAEEL/804-857,Q9TZ70_CAEEL/48-102),(WBS14_MOUSE/662-716,Q9BKE4_DROME/629-683))))),(YMH7_CAEEL/113-164,Q9JIZ5_MOUSE/49-100))),(((Q92001_XENLA/93-144,Q94816_TRISP/235-286),Q25124_HALRO/243-294),O93493_CYPCA/68-119)),(((HLH6_CAEEL/176-226,ASCL3_MOUSE/94-145),(((AST5_DROME/27-91,(AST8_DROME/162-224,(AST3_DROME/86-146,O76488_JUNCO/77-138))),AST4_DROME/102-163),((Q22717_CAEEL/62-113,Q25179_HYDAT/67-117),Q98SF2_XENLA/47-98))),(FIGLA_MOUSE/60-112,Q9W7E6_ORYLA/51-103))),ID4_HUMAN/53-105),ID2_HUMAN/24-76),ID1_HUMAN/56-106,O42447_ONCMY/31-83);
((((((((((((TWST_CAEEL/21-72:0.38143,(TWST2_RAT/67-118:0.04341,Q9GNV2_PODCA/52-103:0.22653):0.12500):0.25631,(Q24353_DROME/104-156:0.61269,(Q24354_DROME/186-238:0.26346,Q16509_HUMAN/188-240:0.04470):0.27247):0.11051):0.07033,(((Q20561_CAEEL/42-94:0.22177,Q9VEY3_DROME/156-206:0.39737):0.11479,Q9VGJ5_DROME/87-139:0.35928):0.17528,Q64305_RAT/163-215:0.19603):0.06075):0.08996,(((MUSC_HUMAN/108-160:0.05846,O18374_DROME/32-84:0.25753):0.11057,Q9JLR5_MOUSE/76-128:0.53384):0.32173,SCX_MOUSE/79-131:0.23240):0.14772):0.03721,(((((O45320_CAEEL/41-95:0.48284,((OLIG3_MOUSE/85-139:0.06640,OLIG1_MOUSE/95-154:0.24228):0.09994,(O45489_CAEEL/50-101:0.15595,BETA3_MESAU/229-283:0.00000):0.10192):0.14651):0.25416,(MIST1_RAT/73-125:0.08028,Q9VID2_DROME/157-209:0.16854):0.18495):0.05127,TAP_DROME/155-207:0.52723):0.06666,((Q9V7M2_DROME/104-156:0.25475,O57598_CHICK/40-92:0.12599):0.07904,(ATO_DROME/256-308:0.31515,AMOS_DROME/139-191:0.18538):0.05374):0.20812):0.19676,(Q18612_CAEEL/24-78:0.69070,(HAND1_CHICK/84-136:0.31556,Q9VL05_DROME/59-111:0.13166):0.18891):0.13915):0.02586):0.04380,(((Q9IAJ4_BRARE/88-142:0.14433,(((O73624_XENLA/96-150:0.29955,(O93439_CHICK/68-122:0.19898,P97309_MOUSE/77-131:0.13210):0.08805):0.02108,Q9DEQ9_CHICK/96-150:0.33817):0.15931,Q9IB69_BRARE/67-121:0.15256):0.02191):0.29888,Q9VHG3_DROME/180-233:0.44792):0.19771,((((Q99NA2_MOUSE/232-284:0.32636,Q9VPI8_DROME/274-326:0.06719):0.15970,HLH4_CAEEL/6-57:0.65413):0.15923,((Q91631_XENLA/8-61:0.17710,DA_DROME/555-608:0.12776):0.20976,Q17588_CAEEL/303-357:0.12816):0.61311):0.21019,DEI_DROME/95-154:0.18407):0.21760):0.19997):0.23908,((((((((Q9ZVB5_ARATH/62-114:0.18800,Q9M1K0_ARATH/77-129:0.04028):0.05753,Q9FYE6_ARATH/66-118:0.29693):0.26903,(Q9SUB6_ARATH/12-64:0.62062,(Q9FLI1_ARATH/2-54:0.18350,(Q9LN89_ARATH/75-127:0.24748,Q9LQ08_ARATH/74-126:0.13808):0.12210):0.40588):0.18720):0.22954,(O82599_ARATH/113-176:0.06368,((Q9FK20_ARATH/100-151:0.31932,(Q9FKQ6_ARATH/100-151:0.36007,Q9C7T4_ARATH/123-174:0.02294):0.07017):0.07665,Q9M270_ARATH/176-227:0.16281):0.05392):0.40076):0.42558,(((((((BHLH2_MOUSE/54-108:0.65320,Q9U450_DROME/63-118:0.40718):0.23567,(HEY1_CANFA/52-105:0.17141,Q9U9U4_DROME/103-156:0.04618):0.05553):0.10684,(((((((ESM3_DROME/12-69:0.09649,ESM7_DROME/14-69:0.14302):0.11587,(ESM8_DROHY/11-66:0.60162,ESMD_DROME/16-73:0.17118):0.07186):0.26242,(Q90465_BRARE/17-73:0.00000,Q9JHC5_MOUSE/19-75:0.27238):0.10643):0.11737,((HES2_HUMAN/14-71:0.31226,(DPN_DROME/41-98:0.09309,Q9VJ16_DROME/51-115:0.29891):0.09769):0.00000,Q91635_XENLA/35-92:0.09802):0.12545):0.01518,O16853_CAEEL/22-79:0.30849):0.12243,(Q9DEU7_BRARE/22-74:0.19604,HES6_MOUSE/28-78:0.60115):0.06745):0.09189,(((((Q9DF73_BRARE/14-71:0.51041,Q99JA6_MOUSE/13-70:0.10293):0.19298,Q9W7B6_XENLA/13-70:0.22123):0.17169,Q90463_BRARE/13-70:0.05895):0.15068,(Q90467_BRARE/7-64:0.25047,Q9W7B5_XENLA/27-84:0.26351):0.14288):0.21340,((Q9PTN8_XENLA/21-75:0.12929,(HES5_MOUSE/19-73:0.05786,Q90466_BRARE/20-74:0.33117):0.04303):0.08634,Q9PTN9_XENLA/2-56:0.11631):0.19948):0.13236):0.24904):0.21343,((((Q98SK3_BRARE/46-99:0.26134,CYCL_DROME/31-84:0.21783):0.08873,BMAL1_HUMAN/73-126:0.07333):0.14851,Q9H2M4_HUMAN/74-127:0.23614):0.10751,(O44118_DROME/37-90:0.11933,Q9VXW7_DROME/8-61:0.13956):0.59423):0.24711):0.21048,((Q12398_YEAST/267-342:0.35634,(O43019_SCHPO/427-496:0.12347,Q9UUD1_SCHPO/261-333:0.17446):0.09608):0.13455,(((Q9XX00_CAEEL/356-406:0.46659,Q24146_DROME/284-334:0.20455):0.08497,Q98SH5_CHICK/177-227:0.20033):0.24129,(Q92242_KLULA/180-254:0.10274,TYE7_YEAST/181-266:0.10899):0.35095):0.10424):0.20984):0.00000,((RTG1_YEAST/12-97:0.53251,(MITF_HUMAN/312-365:0.37247,RTG3_YEAST/286-345:0.63448):0.08452):0.08845,(Q06860_YEAST/251-307:0.31952,NUC1_NEUCR/668-758:0.37632):0.45414):0.08433):0.21120,(Q22069_CAEEL/14-64:0.42213,Q19918_CAEEL/45-96:0.57991):0.51999):0.11024):0.05055,((Q9CAA4_ARATH/46-96:0.22698,Q9FMB6_ARATH/34-86:0.24176):0.29639,((((O23297_ARATH/125-176:0.29385,Q9FH37_ARATH/72-123:0.28453):0.61489,Q9FN69_ARATH/438-487:0.20496):0.25622,Q9SZK7_ARATH/1318-1381:0.57537):0.19034,(Q9LYT0_ARATH/257-306:0.24638,Q9SQ79_PINTA/477-526:0.54722):0.12595):0.06272):0.29116):0.11143,((((Q25428_LYTVA/215-270:0.27421,Q9W4J8_DROME/255-343:0.33952):0.28455,(ESC1_SCHPO/335-386:0.57915,Q9H8R3_HUMAN/594-645:0.60170):0.28987):0.20135,((((MNT_HUMAN/221-272:0.11832,O46042_DROME/262-315:0.43078):0.03318,(Q62912_RAT/58-110:0.21884,(MAD4_HUMAN/54-106:0.09786,(MAD_HUMAN/57-109:0.13445,((Q21663_CAEEL/96-148:0.41507,Q9NDP3_CIOIN/57-109:0.22229):0.17637,MXI1_HUMAN/68-120:0.08169):0.06368):0.06916):0.23619):0.59132):0.28560,TCFL5_HUMAN/353-406:1.10200):0.46396,((Q91421_ONCMY/311-364:0.27109,((MYC_DROME/626-678:0.84572,Q67004_FLV/282-334:0.25699):0.00000,(((MYCL_XENLA/262-314:0.23725,MYCM_HUMAN/275-327:0.27490):0.06074,MYCL_HUMAN/282-334:0.03743):0.24526,(Q26649_STRPU/350-402:0.16756,MYC_ASTVU/322-374:0.17996):0.17789):0.15478):0.13567):0.32367,((Q18711_CAEEL/48-99:0.30061,(Q14803_HUMAN/24-75:0.13221,MAX_DROME/40-91:0.13179):0.09122):0.13809,P90982_CAEEL/30-83:0.37966):0.04299):0.17101):0.06010):0.06906,((MLX_MOUSE/130-188:0.25521,Q9GQP6_DROME/72-128:0.13689):0.21844,((WBS14_CAEEL/804-857:0.46100,Q9TZ70_CAEEL/48-102:0.77175):0.16820,(WBS14_MOUSE/662-716:0.39609,Q9BKE4_DROME/629-683:0.16878):0.16772):0.22591):0.26860):0.05267):0.15151,(YMH7_CAEEL/113-164:0.32570,Q9JIZ5_MOUSE/49-100:0.05324):0.34455):0.28589):0.01229,(((Q92001_XENLA/93-144:0.14908,Q94816_TRISP/235-286:0.13333):0.01172,Q25124_HALRO/243-294:0.18036):0.04037,O93493_CYPCA/68-119:0.05373):0.54425):0.08272,(((HLH6_CAEEL/176-226:0.45373,ASCL3_MOUSE/94-145:0.33030):0.22329,(((AST5_DROME/27-91:0.13707,(AST8_DROME/162-224:0.16065,(AST3_DROME/86-146:0.08834,O76488_JUNCO/77-138:0.18820):0.06048):0.03492):0.04630,AST4_DROME/102-163:0.11286):0.07848,((Q22717_CAEEL/62-113:0.35600,Q25179_HYDAT/67-117:0.23886):0.13862,Q98SF2_XENLA/47-98:0.11078):0.05317):0.09707):0.17143,(FIGLA_MOUSE/60-112:0.28011,Q9W7E6_ORYLA/51-103:0.44808):0.30934):0.14683):0.69886,ID4_HUMAN/53-105:0.20121):0.09970,ID2_HUMAN/24-76:0.23163):0.18982,ID1_HUMAN/56-106:0.17216,O42447_ONCMY/31-83:0.25644);