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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00010 phylogeny
for amino acid alignment


 
(((((((((((((TWST_CAEEL/21-72,(TWST2_RAT/67-118,Q9GNV2_PODCA/52-103)),((Q24353_DROME/104-156,Q18590_CAEEL/33-85),(Q24354_DROME/186-238,Q16509_HUMAN/188-240))),((HAND1_CHICK/84-136,Q9VL05_DROME/59-111),((Q23579_CAEEL/90-141,((MUSC_HUMAN/108-160,O18374_DROME/32-84),Q9JLR5_MOUSE/76-128)),SCX_MOUSE/79-131))),(((Q20561_CAEEL/42-94,Q9VEY3_DROME/156-206),Q9VGJ5_DROME/87-139),Q64305_RAT/163-215)),(Q18612_CAEEL/24-78,((((O45320_CAEEL/41-95,((OLIG3_MOUSE/85-139,OLIG1_MOUSE/95-154),(O45489_CAEEL/50-101,BETA3_MESAU/229-283))),(MIST1_RAT/73-125,Q9VID2_DROME/157-209)),(LIN32_CAEEL/73-125,((ATO_DROME/256-308,AMOS_DROME/139-191),(Q98939_CHICK/86-138,(Q9V7M2_DROME/104-156,O57598_CHICK/40-92))))),(TAP_DROME/155-207,YLB7_CAEEL/20-72)))),(((((O73624_XENLA/96-150,(O93439_CHICK/68-122,P97309_MOUSE/77-131)),Q9DEQ9_CHICK/96-150),(Q9IAJ4_BRARE/88-142,Q9IB69_BRARE/67-121)),Q9VHG3_DROME/180-233),DEI_DROME/95-154)),((HLH6_CAEEL/176-226,ASCL3_MOUSE/94-145),(((Q09961_CAEEL/103-155,Q22717_CAEEL/62-113),Q25179_HYDAT/67-117),(((AST5_DROME/27-91,((AST3_DROME/86-146,O76488_JUNCO/77-138),AST8_DROME/162-224)),AST4_DROME/102-163),Q98SF2_XENLA/47-98)))),((((Q9JL50_PERPL/16-67,(Q94816_TRISP/235-286,Q25124_HALRO/243-294)),Q92001_XENLA/93-144),O93493_CYPCA/68-119),((((Q99NA2_MOUSE/232-284,Q9VPI8_DROME/274-326),HLH4_CAEEL/6-57),((Q91631_XENLA/8-61,DA_DROME/555-608),Q17588_CAEEL/303-357)),Q18277_CAEEL/14-66))),((((((Q22069_CAEEL/14-64,(Q19918_CAEEL/45-96,Q18053_CAEEL/17-66)),(((((O23297_ARATH/125-176,Q9FH37_ARATH/72-123),Q9FN69_ARATH/438-487),Q9SZK7_ARATH/1318-1381),((Q9ARY0_ORYSA/649-704,Q9LYT0_ARATH/257-306),Q9SQ79_PINTA/477-526)),((Q9CAA4_ARATH/46-96,Q9FMB6_ARATH/34-86),((((Q9FK20_ARATH/100-151,(Q9C7T4_ARATH/123-174,Q9FKQ6_ARATH/100-151)),Q9M270_ARATH/176-227),O82599_ARATH/113-176),(Q9SUB6_ARATH/12-64,(Q9FLI1_ARATH/2-54,(Q9LN89_ARATH/75-127,Q9LQ08_ARATH/74-126))))))),((Q9FYE6_ARATH/66-118,Q9M1K0_ARATH/77-129),Q9ZVB5_ARATH/62-114)),((((((MNT_HUMAN/221-272,O46042_DROME/262-315),(Q62912_RAT/58-110,((Q21663_CAEEL/96-148,Q9NDP3_CIOIN/57-109),(MAD4_HUMAN/54-106,(MAD_HUMAN/57-109,MXI1_HUMAN/68-120))))),TCFL5_HUMAN/353-406),(ESC1_SCHPO/335-386,Q9H8R3_HUMAN/594-645)),((MYC_DROME/626-678,((Q91421_ONCMY/311-364,Q67004_FLV/282-334),(((MYCL_XENLA/262-314,MYCM_HUMAN/275-327),MYCL_HUMAN/282-334),(Q26649_STRPU/350-402,MYC_ASTVU/322-374)))),((Q18711_CAEEL/48-99,(Q14803_HUMAN/24-75,MAX_DROME/40-91)),P90982_CAEEL/30-83))),((Q25428_LYTVA/215-270,Q9W4J8_DROME/255-343),((RTG1_YEAST/12-97,((P91527_CAEEL/238-291,MITF_HUMAN/312-365),RTG3_YEAST/286-345)),((((((Q98SK3_BRARE/46-99,CYCL_DROME/31-84),BMAL1_HUMAN/73-126),Q9H2M4_HUMAN/74-127),(O44118_DROME/37-90,Q9VXW7_DROME/8-61)),((((BHLH2_MOUSE/54-108,Q9U450_DROME/63-118),(HEY1_CANFA/52-105,Q9U9U4_DROME/103-156)),(Q06860_YEAST/251-307,NUC1_NEUCR/668-758)),(((((((ESM3_DROME/12-69,ESM7_DROME/14-69),(ESM8_DROHY/11-66,ESMD_DROME/16-73)),(Q90465_BRARE/17-73,Q9JHC5_MOUSE/19-75)),((HES2_HUMAN/14-71,(DPN_DROME/41-98,Q9VJ16_DROME/51-115)),Q91635_XENLA/35-92)),(Q9DEU7_BRARE/22-74,HES6_MOUSE/28-78)),O16853_CAEEL/22-79),(((((Q9DF73_BRARE/14-71,Q99JA6_MOUSE/13-70),Q9W7B6_XENLA/13-70),Q90463_BRARE/13-70),(Q90467_BRARE/7-64,Q9W7B5_XENLA/27-84)),((Q9PTN8_XENLA/21-75,(HES5_MOUSE/19-73,Q90466_BRARE/20-74)),Q9PTN9_XENLA/2-56))))),((Q12398_YEAST/267-342,(O43019_SCHPO/427-496,Q9UUD1_SCHPO/261-333)),(((Q98SH5_CHICK/177-227,Q9XX00_CAEEL/356-406),(Q98SH6_CHICK/68-118,Q24146_DROME/284-334)),(Q92242_KLULA/180-254,TYE7_YEAST/181-266)))))))),(Q9TZ70_CAEEL/48-102,((WBS14_CAEEL/804-857,(WBS14_MOUSE/662-716,Q9BKE4_DROME/629-683)),(MLX_MOUSE/130-188,Q9GQP6_DROME/72-128)))),(YMH7_CAEEL/113-164,Q9JIZ5_MOUSE/49-100))),(FIGLA_MOUSE/60-112,Q9W7E6_ORYLA/51-103)),Q18056_CAEEL/146-203),(ID2_HUMAN/24-76,ID4_HUMAN/53-105)),ID1_HUMAN/56-106,O42447_ONCMY/31-83);
(((((((((((((TWST_CAEEL/21-72:0.35490,(TWST2_RAT/67-118:0.05695,Q9GNV2_PODCA/52-103:0.21364):0.15775):0.25822,((Q24353_DROME/104-156:0.26299,Q18590_CAEEL/33-85:0.22199):0.33206,(Q24354_DROME/186-238:0.27713,Q16509_HUMAN/188-240:0.03146):0.30624):0.09108):0.00000,((HAND1_CHICK/84-136:0.29150,Q9VL05_DROME/59-111:0.13896):0.19359,((Q23579_CAEEL/90-141:0.53004,((MUSC_HUMAN/108-160:0.02524,O18374_DROME/32-84:0.28027):0.11378,Q9JLR5_MOUSE/76-128:0.57418):0.13062):0.21952,SCX_MOUSE/79-131:0.21669):0.16541):0.13931):0.12183,(((Q20561_CAEEL/42-94:0.22823,Q9VEY3_DROME/156-206:0.38691):0.13243,Q9VGJ5_DROME/87-139:0.33313):0.15343,Q64305_RAT/163-215:0.24213):0.00000):0.16073,(Q18612_CAEEL/24-78:0.68951,((((O45320_CAEEL/41-95:0.46875,((OLIG3_MOUSE/85-139:0.06762,OLIG1_MOUSE/95-154:0.24479):0.11371,(O45489_CAEEL/50-101:0.15604,BETA3_MESAU/229-283:0.00000):0.08562):0.14456):0.23771,(MIST1_RAT/73-125:0.06128,Q9VID2_DROME/157-209:0.18528):0.24315):0.08602,(LIN32_CAEEL/73-125:0.35185,((ATO_DROME/256-308:0.31657,AMOS_DROME/139-191:0.20675):0.04749,(Q98939_CHICK/86-138:0.10289,(Q9V7M2_DROME/104-156:0.24888,O57598_CHICK/40-92:0.17493):0.10729):0.04207):0.09326):0.11536):0.05999,(TAP_DROME/155-207:0.38256,YLB7_CAEEL/20-72:0.34802):0.11707):0.22838):0.00000):0.05645,(((((O73624_XENLA/96-150:0.30874,(O93439_CHICK/68-122:0.19785,P97309_MOUSE/77-131:0.13727):0.07340):0.03127,Q9DEQ9_CHICK/96-150:0.33779):0.12408,(Q9IAJ4_BRARE/88-142:0.14550,Q9IB69_BRARE/67-121:0.16124):0.05244):0.31238,Q9VHG3_DROME/180-233:0.43213):0.11886,DEI_DROME/95-154:0.41761):0.18073):0.18162,((HLH6_CAEEL/176-226:0.42917,ASCL3_MOUSE/94-145:0.36588):0.15237,(((Q09961_CAEEL/103-155:0.42378,Q22717_CAEEL/62-113:0.15634):0.24136,Q25179_HYDAT/67-117:0.23354):0.10887,(((AST5_DROME/27-91:0.12542,((AST3_DROME/86-146:0.08538,O76488_JUNCO/77-138:0.19017):0.06330,AST8_DROME/162-224:0.16330):0.04143):0.04231,AST4_DROME/102-163:0.11568):0.10376,Q98SF2_XENLA/47-98:0.12459):0.06937):0.13473):0.10528):0.08355,((((Q9JL50_PERPL/16-67:0.07362,(Q94816_TRISP/235-286:0.13645,Q25124_HALRO/243-294:0.16989):0.02742):0.01607,Q92001_XENLA/93-144:0.14892):0.00000,O93493_CYPCA/68-119:0.09847):0.38695,((((Q99NA2_MOUSE/232-284:0.24546,Q9VPI8_DROME/274-326:0.16038):0.30937,HLH4_CAEEL/6-57:0.46220):0.07002,((Q91631_XENLA/8-61:0.16869,DA_DROME/555-608:0.14057):0.14276,Q17588_CAEEL/303-357:0.18639):0.68572):0.12198,Q18277_CAEEL/14-66:0.74071):0.20782):0.17787):0.12764,((((((Q22069_CAEEL/14-64:0.45757,(Q19918_CAEEL/45-96:0.35682,Q18053_CAEEL/17-66:0.51519):0.23620):0.52808,(((((O23297_ARATH/125-176:0.28086,Q9FH37_ARATH/72-123:0.29711):0.61899,Q9FN69_ARATH/438-487:0.20608):0.27714,Q9SZK7_ARATH/1318-1381:0.60767):0.11585,((Q9ARY0_ORYSA/649-704:0.13545,Q9LYT0_ARATH/257-306:0.10543):0.20655,Q9SQ79_PINTA/477-526:0.49010):0.21956):0.08685,((Q9CAA4_ARATH/46-96:0.25541,Q9FMB6_ARATH/34-86:0.20883):0.30191,((((Q9FK20_ARATH/100-151:0.31900,(Q9C7T4_ARATH/123-174:0.02141,Q9FKQ6_ARATH/100-151:0.36207):0.07106):0.07554,Q9M270_ARATH/176-227:0.16523):0.04887,O82599_ARATH/113-176:0.06812):0.30702,(Q9SUB6_ARATH/12-64:0.72035,(Q9FLI1_ARATH/2-54:0.17749,(Q9LN89_ARATH/75-127:0.24602,Q9LQ08_ARATH/74-126:0.13903):0.13594):0.27883):0.46102):0.46638):0.00000):0.23649):0.13851,((Q9FYE6_ARATH/66-118:0.35969,Q9M1K0_ARATH/77-129:0.00904):0.09328,Q9ZVB5_ARATH/62-114:0.13070):0.73103):0.03207,((((((MNT_HUMAN/221-272:0.14728,O46042_DROME/262-315:0.40630):0.36582,(Q62912_RAT/58-110:0.42018,((Q21663_CAEEL/96-148:0.39134,Q9NDP3_CIOIN/57-109:0.26847):0.12767,(MAD4_HUMAN/54-106:0.15054,(MAD_HUMAN/57-109:0.14539,MXI1_HUMAN/68-120:0.13321):0.00000):0.08346):0.01602):0.39427):0.00140,TCFL5_HUMAN/353-406:1.02156):0.43369,(ESC1_SCHPO/335-386:0.50260,Q9H8R3_HUMAN/594-645:0.71839):0.22241):0.22636,((MYC_DROME/626-678:0.76165,((Q91421_ONCMY/311-364:0.36983,Q67004_FLV/282-334:0.23241):0.10475,(((MYCL_XENLA/262-314:0.23647,MYCM_HUMAN/275-327:0.27806):0.06162,MYCL_HUMAN/282-334:0.03340):0.24052,(Q26649_STRPU/350-402:0.17020,MYC_ASTVU/322-374:0.18099):0.18386):0.10142):0.11983):0.30124,((Q18711_CAEEL/48-99:0.31128,(Q14803_HUMAN/24-75:0.13081,MAX_DROME/40-91:0.13193):0.06952):0.13748,P90982_CAEEL/30-83:0.37924):0.03420):0.16766):0.09924,((Q25428_LYTVA/215-270:0.27617,Q9W4J8_DROME/255-343:0.37500):0.39558,((RTG1_YEAST/12-97:0.58497,((P91527_CAEEL/238-291:0.08734,MITF_HUMAN/312-365:0.15549):0.21405,RTG3_YEAST/286-345:0.61909):0.13524):0.16485,((((((Q98SK3_BRARE/46-99:0.26222,CYCL_DROME/31-84:0.21776):0.09037,BMAL1_HUMAN/73-126:0.07214):0.12687,Q9H2M4_HUMAN/74-127:0.25897):0.16757,(O44118_DROME/37-90:0.12880,Q9VXW7_DROME/8-61:0.13014):0.55061):0.26008,((((BHLH2_MOUSE/54-108:0.71023,Q9U450_DROME/63-118:0.35292):0.19449,(HEY1_CANFA/52-105:0.15008,Q9U9U4_DROME/103-156:0.07116):0.11237):0.11264,(Q06860_YEAST/251-307:0.47291,NUC1_NEUCR/668-758:0.21175):0.41786):0.03499,(((((((ESM3_DROME/12-69:0.09515,ESM7_DROME/14-69:0.14431):0.11889,(ESM8_DROHY/11-66:0.60460,ESMD_DROME/16-73:0.17064):0.06912):0.24284,(Q90465_BRARE/17-73:0.02817,Q9JHC5_MOUSE/19-75:0.25045):0.10283):0.11806,((HES2_HUMAN/14-71:0.31921,(DPN_DROME/41-98:0.09157,Q9VJ16_DROME/51-115:0.29952):0.10121):0.00000,Q91635_XENLA/35-92:0.09290):0.10599):0.07023,(Q9DEU7_BRARE/22-74:0.22743,HES6_MOUSE/28-78:0.57579):0.09909):0.13912,O16853_CAEEL/22-79:0.20771):0.11090,(((((Q9DF73_BRARE/14-71:0.51184,Q99JA6_MOUSE/13-70:0.10354):0.18718,Q9W7B6_XENLA/13-70:0.22727):0.16418,Q90463_BRARE/13-70:0.06635):0.09937,(Q90467_BRARE/7-64:0.23516,Q9W7B5_XENLA/27-84:0.28606):0.16645):0.21773,((Q9PTN8_XENLA/21-75:0.15330,(HES5_MOUSE/19-73:0.03311,Q90466_BRARE/20-74:0.35859):0.04448):0.11757,Q9PTN9_XENLA/2-56:0.06573):0.20078):0.05985):0.30329):0.21732):0.19476,((Q12398_YEAST/267-342:0.36935,(O43019_SCHPO/427-496:0.12321,Q9UUD1_SCHPO/261-333:0.17548):0.07540):0.10807,(((Q98SH5_CHICK/177-227:0.26259,Q9XX00_CAEEL/356-406:0.49864):0.00000,(Q98SH6_CHICK/68-118:0.02371,Q24146_DROME/284-334:0.24772):0.03125):0.21384,(Q92242_KLULA/180-254:0.11110,TYE7_YEAST/181-266:0.09905):0.40450):0.07101):0.16350):0.00000):0.21232):0.07042):0.03658):0.12371,(Q9TZ70_CAEEL/48-102:0.81903,((WBS14_CAEEL/804-857:0.58400,(WBS14_MOUSE/662-716:0.37320,Q9BKE4_DROME/629-683:0.19582):0.16070):0.14863,(MLX_MOUSE/130-188:0.24237,Q9GQP6_DROME/72-128:0.15319):0.27701):0.16506):0.14691):0.14122,(YMH7_CAEEL/113-164:0.27159,Q9JIZ5_MOUSE/49-100:0.10923):0.33535):0.36402):0.04979,(FIGLA_MOUSE/60-112:0.19898,Q9W7E6_ORYLA/51-103:0.51525):0.33776):0.21524,Q18056_CAEEL/146-203:1.03716):0.36896,(ID2_HUMAN/24-76:0.25232,ID4_HUMAN/53-105:0.27360):0.07434):0.11919,ID1_HUMAN/56-106:0.16227,O42447_ONCMY/31-83:0.27842);