|
|
pan•dit
|
PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
|
PANDIT : Protein and Associated Nucleotide Domains with Inferred Trees
Version 17.0, Sep 05, 7738 families
|
PANDIT is frozen |
|
Thursday 13 November 2008
The data in PANDIT and the dataset's development have been frozen
owing to a lack of funding support. The existing data, version 17.0
corresponding to Pfam 17.0, remain stable and, we hope, useful.
|
| |
PANDIT description |
PANDIT is a collection of multiple sequence alignments and phylogenetic trees covering many common protein domains.
It contains:
- the seed protein sequence alignments from the Pfam-A (curated families) database (version 17.0)
- nucleotide sequence alignments derived from sequences available for the above and using the protein alignments as ‘templates’
- protein sequence alignments restricted to the family members for which nucleotide sequences are available
- inferred phylogenetic trees for each alignment
 A new Pandit paper has been published in NAR (2006): click here to download it!
Pandit version 17.0 is now online! From version 17.0, Pandit now
includes an assessment of alignment quality based on HMM methodology.
Phylogenies in Pandit are built ignoring alignment regions that are
deemed unreliable. See the release notes
for further details.
The 'Pandit' database name has been cited as "remarkably creative" and
"apt" (Galperin 2005:D5 [Nucl. Acids Res. 33:D5-D24]).
To receive e-mail notification of Pandit news,
see here.
|
| |
Interactive WWW access to PANDIT |
|
|
| |
Download access to PANDIT |
|
Download the PANDIT database:
Copyright notice for PANDIT
The full text of the GNU Library General Public License under which PANDIT is licensed
|
|
|
 |
|
|
|
|
|
|
|
