#AC.SeqVer. EntryVer. Ver.Date Taxid Description JF730436.1 1 20110926 512019 Rana chosenica mitochondrion AP009202.1 1 20090110 392897 Abalistes stellaris mitochondrion GQ337955.1 1 20110701 658384 Abidama producta mitochondrion EU302588.1 1 20081105 485912 Abispa ephippium mitochondrion AB373007.1 1 20080827 129035 Ablennes hians mitochondrion AP006016.1 2 20081119 192871 Abudefduf vaigiensis mitochondrion EF672731.2 5 20100806 449243 Acanella eburnea mitochondrion AP009212.1 1 20090110 392908 Acanthaluteres brownii mitochondrion U12386.1 18 20061114 5755 Acanthamoeba castellanii mitochondrion AB231476.1 3 20081118 339859 Acanthaster brevispinus mitochondrion AB231475.1 4 20081118 133434 Acanthaster planci mitochondrion DQ632743.1 1 20061004 385555 Acanthocardia tuberculata mitochondrion HQ186249.1 1 20111031 6277 Acanthocheilonema viteae mitochondrion AY486321.1 1 20040724 267130 Acanthogobius hasta mitochondrion EF506764.1 2 20081112 8177 Acanthopagrus latus mitochondrion AB266452.1 2 20100627 285987 Acanthosaura armata mitochondrion EU136032.1 1 20070917 459747 Acanthurus leucosternon mitochondrion EU273284.2 4 20101119 483362 Acanthurus lineatus mitochondrion AB242161.1 3 20091028 357281 Acantopsis choirorhynchos mitochondrion AP010797.1 1 20081229 8957 Accipiter gentilis mitochondrion HQ834450.1 1 20110206 978109 Aceros waldeni mitochondrion AP011981.1 1 20110629 909829 Acestrorhynchus sp. NM-2010 mitochondrion FJ424614.1 1 20081112 572522 Achalinus meiguensis mitochondrion EF483933.1 2 20100220 430564 Acheilognathus intermedia mitochondrion EF483932.1 1 20091231 430563 Acheilognathus koreensis mitochondrion EF483935.1 1 20091231 80791 Acheilognathus macropterus mitochondrion EF483930.1 2 20100220 80807 Acheilognathus signifer mitochondrion FJ515921.1 1 20101231 481701 Acheilognathus somjinensis mitochondrion AB239602.1 2 20090215 80789 Acheilognathus typus mitochondrion EF483936.1 1 20091231 80790 Acheilognathus yamatsutae mitochondrion AY457170.1 3 20081118 262805 Achelia bituberculata mitochondrion HQ337793.1 1 20110627 145980 Acidosasa purpurea chloroplast AF344830.1 7 20061114 32536 Acinonyx jubatus mitochondrion JQ045341.1 1 20111225 27689 Acipenser baerii mitochondrion AY510085.1 3 20070311 62061 Acipenser dabryanus mitochondrion FJ392605.1 1 20090401 7902 Acipenser gueldenstaedtii mitochondrion EU719645.1 1 20090430 61970 Acipenser sinensis mitochondrion AJ585050.1 4 20071107 7903 Acipenser stellatus mitochondrion AB042837.1 3 20101229 7904 Acipenser transmontanus mitochondrion FJ613420.1 2 20091120 590154 Acmaeodera sp. NCS-2009 mitochondrion JN571139.1 1 20111010 10068 Acomys cahirinus mitochondrion, isolate A01 JN571142.1 1 20111010 10068 Acomys cahirinus mitochondrion, isolate A15 JN571143.1 1 20111010 10068 Acomys cahirinus mitochondrion, isolate A20 JN571144.1 1 20111010 10068 Acomys cahirinus mitochondrion, isolate A32 JN571145.1 1 20111010 10068 Acomys cahirinus mitochondrion, isolate A33 JN571146.1 1 20111010 10068 Acomys cahirinus mitochondrion, isolate A51 JN571147.1 1 20111010 10068 Acomys cahirinus mitochondrion, isolate A52 JN571140.1 1 20111010 10068 Acomys cahirinus mitochondrion, isolate A101 JN571141.1 1 20111010 10068 Acomys cahirinus mitochondrion, isolate A102 JN571151.1 1 20111010 10068 Acomys cahirinus mitochondrion, isolate E02 JN571155.1 1 20111010 10068 Acomys cahirinus mitochondrion, isolate E03 JN571148.1 1 20111010 10068 Acomys cahirinus mitochondrion, isolate E08 JN571149.1 1 20111010 10068 Acomys cahirinus mitochondrion, isolate E09 JN571152.1 1 20111010 10068 Acomys cahirinus mitochondrion, isolate E10 JN571153.1 1 20111010 10068 Acomys cahirinus mitochondrion, isolate E14 JN571154.1 1 20111010 10068 Acomys cahirinus mitochondrion, isolate E21 JN571150.1 1 20111010 10068 Acomys cahirinus mitochondrion, isolate E22 EU273602.1 1 20071121 263995 Acorus americanus chloroplast AJ879453.1 6 20061114 4465 Acorus calamus chloroplast GQ376195.1 2 20100921 378386 Acraea issoria mitochondrion AP009213.1 1 20090110 392910 Acreichthys tomentosus mitochondrion GU344100.1 3 20110126 244713 Acrida cinerea mitochondrion EU938372.1 1 20080930 227550 Acrida willemsei mitochondrion JF810423.1 1 20110531 451382 Acridotheres cristatellus mitochondrion AM889139.1 2 20080221 48156 Acrocephalus scirpaceus mitochondrion AB177879.1 3 20080924 46287 Acrochordus granulatus mitochondrion AF338425.1 3 20050415 70783 Acropora tenuis mitochondrion FJ752436.1 2 20100615 8992 Acryllium vulturinum mitochondrion FJ411411.1 1 20081216 7029 Acyrthosiphon pisum mitochondrion FJ613422.1 2 20091120 590155 Adelium sp. NCS-2009 mitochondrion AY178864.1 7 20050416 13818 Adiantum capillus-veneris chloroplast DQ073916.1 2 20060525 85585 Adoxophyes honmai mitochondrion EU352212.1 1 20080105 7159 Aedes aegypti mitochondrion AY072044.1 2 20050416 7160 Aedes albopictus mitochondrion EU344979.1 2 20090115 48279 Aegotheles cristatus mitochondrion AP009198.1 2 20080116 270546 Aeoliscus strigatus mitochondrion EU427333.1 1 20081224 498933 Aeschyntelus notatus mitochondrion AP009366.1 1 20070414 434059 Aethionema cordifolium chloroplast AP009367.1 1 20070414 72657 Aethionema grandiflorum chloroplast DQ665656.1 1 20060703 390897 Agamermis sp. BH-2006 isolate Riverside mitochondrion EU410486.1 2 20090115 60468 Agapornis roseicollis mitochondrion DQ643831.1 2 20060616 367765 Agaricia humilis mitochondrion EU237475.1 2 20090113 333317 Agelas schmidti mitochondrion JF826503.1 2 20110602 176616 Ageratina adenophora chloroplast DQ523161.1 2 20070818 8715 Agkistrodon piscivorus mitochondrion HM071001.1 1 20110714 184613 Agriosphodrus dohrni mitochondrion EF115543.1 1 20061208 63632 Agrostis stolonifera cultivar Penn A-4 chloroplast EF212882.1 2 20070630 9646 Ailuropoda melanoleuca mitochondrion AM711897.1 3 20080403 9649 Ailurus fulgens mitochondrion AB291074.1 2 20071011 424585 Ailurus fulgens styani mitochondrion X83390.1 10 20061114 42349 Albinaria caerulea mitochondrion AP002973.1 4 20101229 121402 Albula glossodonta mitochondrion AB239593.1 2 20090215 54556 Alburnus alburnus mitochondrion AP002974.1 4 20101229 143900 Aldrovandia affinis mitochondrion FJ752426.1 4 20100615 9078 Alectoris chukar mitochondrion AY346091.1 2 20061121 81907 Alectura lathami mitochondrion AP009570.1 1 20091130 492023 Alepocephalus agassizii mitochondrion AP009571.1 1 20091130 492024 Alepocephalus australis mitochondrion AP009572.1 1 20091130 134618 Alepocephalus bairdii mitochondrion AP009399.1 1 20080620 443629 Alepocephalus bicolor mitochondrion AP009574.1 1 20091130 492027 Alepocephalus productus mitochondrion AP004100.1 4 20061114 170189 Alepocephalus tenebrosus mitochondrion AP009575.1 1 20091130 492028 Alepocephalus umbriceps mitochondrion AY572538.1 3 20061114 266942 Aleurochiton aceris mitochondrion AY521251.1 5 20061114 30099 Aleurodicus dugesii mitochondrion Y13113.1 10 20061114 8496 Alligator mississippiensis mitochondrion AF511507.1 2 20050415 38654 Alligator sinensis mitochondrion AP004435.1 2 20050416 181445 Allocyttus niger mitochondrion HM235722.1 1 20111202 796621 Alloeorhynchus bakeri mitochondrion U41288.1 6 20061114 28583 Allomyces macrogynus mitochondrion AP009131.1 1 20070612 278164 Alosa alosa mitochondrion AP009132.1 1 20070612 34774 Alosa pseudoharengus mitochondrion HQ331537.1 2 20110922 34773 Alosa sapidissima mitochondrion GQ892049.1 2 20110630 674293 Alpheus distinguendus mitochondrion FJ556581.1 3 20110419 204586 Alsophila spinulosa chloroplast AP009183.1 2 20110726 303710 Aluterus scriptus mitochondrion AY585337.1 3 20061114 171366 Alytes obstetricans pertinax mitochondrion GU196685.1 1 20100715 698013 Amalda northlandica mitochondrion AP009214.1 1 20090110 245707 Amanses scopas mitochondrion AP009617.1 1 20100627 501721 Amazonsprattus scintilla mitochondrion AP012001.1 1 20110629 909836 Amblydoras gonzalezi mitochondrion AB113317.1 2 20061114 65637 Amblyomma triguttatum mitochondrion AF106038.1 3 20050415 386614 Amblyraja radiata mitochondrion AJ506156.2 6 20061114 13333 Amborella trichopoda chloroplast GU078472.1 1 20100920 436160 Ambystoma unisexual lineage LJJJ mitochondrion AY659993.1 2 20050415 282260 Ambystoma andersoni mitochondrion GU078469.1 1 20100920 238860 Ambystoma barbouri mitochondrion AY659995.1 2 20050415 43107 Ambystoma californiense mitochondrion AY659994.1 2 20050415 282261 Ambystoma dumerilii mitochondrion AY728218.1 2 20040922 8298 Ambystoma laterale mitochondrion AJ584639.1 4 20061114 8296 Ambystoma mexicanum GU078471.1 1 20100920 8304 Ambystoma texanum mitochondrion AY659992.1 2 20050415 43116 Ambystoma tigrinum tigrinum mitochondrion AB042952.1 4 20101229 7924 Amia calva mitochondrion GU065293.1 2 20110220 648471 Ammothea carolinensis mitochondrion EF466060.1 2 20080531 9899 Ammotragus lervia mitochondrion DQ835616.1 1 20070501 393050 Amolops tormotus mitochondrion AP012002.1 1 20110629 909837 Amphilius sp. NM-2010 mitochondrion EU237474.1 2 20080221 178514 Amphimedon compressa mitochondrion DQ915601.1 1 20070202 400682 Amphimedon queenslandica mitochondrion FN562578.1 2 20100602 48271 Amphipholis squamata mitochondrion JQ030887.1 1 20120102 367269 Amphiprion bicinctus mitochondrion, isolate RSRCmb2010 AP006017.1 2 20081119 80972 Amphiprion ocellaris mitochondrion AY605475.1 2 20061114 273519 Amphisbaena schmidti mitochondrion voucher MVZ 232754 EF373911.1 1 20071108 316456 Anabrus simplex mitochondrion AY903295.1 3 20050417 310697 Anacropora matthai mitochondrion AP010843.1 2 20101229 556235 Anarchias sp. Ansp mitochondrion EF427918.1 2 20070911 425520 Anarhichas denticulatus mitochondrion EF427916.1 1 20070831 8204 Anarhichas lupus mitochondrion EF427917.1 2 20070911 65739 Anarhichas minor mitochondrion JF730435.1 2 20111202 56278 Anas formosa mitochondrion EU009397.1 1 20070714 8839 Anas platyrhynchos mitochondrion AP011557.1 1 20100627 686567 Anchoviella sp. LBP 2297 mitochondrion FJ483518.1 1 20090323 29170 Ancylostoma caninum mitochondrion AJ417718.1 2 20050415 51022 Ancylostoma duodenale mitochondrion AJ492192.1 4 20061114 141262 Andrias davidianus mitochondrion AB208679.1 2 20061114 166789 Andrias japonicus mitochondrion AY728214.1 2 20040922 154579 Aneides flavipunctatus mitochondrion AY728226.1 2 20040922 154580 Aneides hardii mitochondrion EU043314.1 2 20080223 280810 Aneura mirabilis chloroplast DQ821119.1 5 20070801 13825 Angiopteris evecta chloroplast GQ398121.1 2 20090810 6313 Angiostrongylus cantonensis mitochondrion GQ398122.1 2 20090810 334426 Angiostrongylus costaricensis mitochondrion AP007233.1 3 20110119 7936 Anguilla anguilla mitochondrion AP007234.1 3 20110119 86961 Anguilla australis australis mitochondrion AP007235.1 4 20110119 86962 Anguilla australis schmidtii mitochondrion AP007245.1 3 20110119 103832 Anguilla bengalensis labiata mitochondrion AP007236.1 3 20110119 61125 Anguilla bicolor bicolor mitochondrion AP007237.3 4 20110512 61126 Anguilla bicolor pacifica mitochondrion AP007239.1 3 20110119 48163 Anguilla celebesensis mitochondrion AP007240.1 3 20110119 61127 Anguilla dieffenbachii mitochondrion AP007241.1 3 20110119 86967 Anguilla interioris mitochondrion AB038556.2 5 20110119 7937 Anguilla japonica mitochondrion AB469437.1 4 20110119 573744 Anguilla luzonensis mitochondrion AP007238.1 3 20110119 103812 Anguilla malgumora mitochondrion AP007242.1 3 20110119 7939 Anguilla marmorata mitochondrion AP007243.1 3 20110119 86963 Anguilla megastoma mitochondrion AP007244.1 3 20110119 48164 Anguilla mossambica mitochondrion AP007246.1 3 20110119 86966 Anguilla nebulosa nebulosa mitochondrion AP007247.1 3 20110119 86964 Anguilla obscura mitochondrion AP007248.1 3 20110119 48165 Anguilla reinhardtii mitochondrion AP007249.2 4 20110121 7938 Anguilla rostrata mitochondrion EU917054.1 1 20091015 549385 Anguilla sp. HYT-2008 mitochondrion EU443256.1 1 20081216 102178 Anguis fragilis mitochondrion FJ755180.1 3 20100721 51844 Anilius scytale mitochondrion AY994157.1 1 20060329 6269 Anisakis simplex mitochondrion AP011614.1 1 20120106 604079 Anodontostoma chacunda mitochondrial DNA, incomplete EU747728.2 4 20110930 28377 Anolis carolinensis mitochondrion AF338714.1 4 20050527 8811 Anomalopteryx didiformis mitochondrion, partial AM159537.1 2 20070220 359030 Anomalurus sp. GP-2005 mitochondrion GQ329703.1 1 20100421 38684 Anomochloa marantoidea chloroplast JF973314.1 1 20111018 84230 Anomodon rugelii mitochondrion HQ335344.1 1 20110309 58236 Anopheles albitarsis mitochondrion HQ335349.1 1 20110309 352057 Anopheles albitarsis F mitochondrion HQ335346.1 1 20110309 908352 Anopheles albitarsis G mitochondrion GQ918272.1 1 20100628 43151 Anopheles darlingi mitochondrion HQ335347.1 1 20110309 58243 Anopheles deaneorum mitochondrion DQ146364.1 2 20061114 62324 Anopheles funestus mitochondrion L20934.1 8 20061114 7165 Anopheles gambiae mitochondrion HQ335348.1 1 20110309 337448 Anopheles janconnae mitochondrion HQ335345.1 1 20110309 58237 Anopheles oryzalimnetes mitochondrion L04272.1 11 20061114 42377 Anopheles quadrimaculatus A mitochondrion AP009186.1 2 20110726 388627 Anoplocapros lenticularis mitochondrion AP004425.1 2 20050416 88656 Anoplogaster cornuta mitochondrion DQ768215.1 2 20061114 217634 Anoplophora glabripennis mitochondrion AF363031.1 2 20050415 50365 Anser albifrons mitochondrion EU932689.1 1 20080826 8843 Anser anser mitochondrion AY309455.1 4 20050416 8851 Anseranas semipalmata mitochondrion AM404181.1 2 20080512 105859 Antedon mediterranea mitochondion AY242996.2 4 20090428 7119 Antheraea pernyi mitochondrion EU726630.1 2 20090819 7121 Antheraea yamamai mitochondrion AB086179.1 14 20061114 48387 Anthoceros formosae chloroplast GU456628.1 1 20110131 40888 Anthriscus cerefolium chloroplast AP002943.1 2 20050416 143339 Antigonia capros mitochondrion AP003422.1 1 20090224 59525 Antilope cervicapra mitochondrion DQ344025.1 1 20080101 364406 Antrokoreana gracilipes mitochondrion GQ131336.1 1 20090603 160702 Anyperodon leucogrammicus mitochondrion FJ785421.1 1 20090422 43147 Aotus lemurinus mitochondrion FJ890514.1 1 20100407 100213 Apalone ferox mitochondrion AP011998.1 1 20110629 42612 Apareiodon affinis mitochondrion FJ613421.1 2 20091120 590156 Apatides fortis mitochondrion JF437925.1 1 20110930 461127 Apatura ilia mitochondrion JF801742.1 1 20110516 642990 Apatura metis mitochondrion AB445126.1 2 20090113 240154 Apeltes quadracus mitochondrion EU523754.1 1 20080401 507507 Aphonopelma sp. 1 SEM-2008 mitochondrion AP004403.1 2 20050416 94919 Aphredoderus sayanus mitochondrion EU000309.1 2 20081126 83887 Aphrocallistes vastus mitochondrion AB218688.1 3 20090215 140595 Aphyocypris chinensis mitochondrion GQ162109.1 3 20110904 7461 Apis cerana mitochondrion L06178.1 10 20061114 7469 Apis mellifera ligustica mitochondrion FN313538.1 1 20091127 286149 Aplidium conicum mitochondrion AB373005.1 3 20091127 52581 Aplocheilus panchax mitochondrion AY569552.1 6 20060425 6500 Aplysia californica mitochondrion DQ991927.1 2 20110429 144766 Aplysia dactylomela mitochondrion EU237476.1 2 20080221 289401 Aplysina fulva mitochondrion AP011624.1 1 20110114 417555 Apochrysa matsumurae mitochondrion HM034866.1 1 20120102 39030 Apodemus agrarius mitochondrion JN629047.1 1 20111202 39030 Apodemus agrarius mitochondrion HM034867.1 1 20120102 754351 Apodemus chejuensis mitochondrion HQ660074.1 1 20120102 105297 Apodemus peninsulae mitochondrion JN546584.1 1 20111004 105297 Apodemus peninsulae mitochondrion FJ906623.1 2 20101119 307972 Apostichopus japonicus mitochondrion AF338708.2 5 20050527 8823 Apteryx haastii mitochondrion GU071052.1 1 20100205 8824 Apteryx owenii mitochondrion AM237310.1 2 20061114 8895 Apus apus mitochondrion Y08501.2 20 20090630 3702 Arabidopsis thaliana mitochondrion AP000423.1 11 20090702 3702 Arabidopsis thaliana chloroplast JF729200.1 2 20110719 3702 Arabidopsis thaliana ecotype C24 mitochondrion JF729201.1 2 20110719 3702 Arabidopsis thaliana ecotype Col-0 mitochondrion JF729202.1 2 20110719 3702 Arabidopsis thaliana ecotype Landsberg erecta mitochondrion AP009369.1 1 20070414 78191 Arabis hirsuta chloroplast JN861748.1 1 20111113 270899 Arachnocampa flava mitochondrion EF523611.1 2 20080411 113544 Arapaima gigas mitochondrion HM640208.1 2 20110527 869457 Aratinga pertinax chrysogenys mitochondrion X80396.1 16 20061214 7640 Arbacia lixula mitochondrion FJ752425.1 4 20100615 604435 Arborophila gingica mitochondrion FJ194942.1 1 20090323 559495 Arborophila rufipectus mitochondrion FJ752424.1 4 20100615 604433 Arborophila rufogularis mitochondrion JQ067650.1 1 20120116 84005 Arbutus unedo chloroplast EF532935.1 2 20080326 190676 Archilochus colubris mitochondrion FJ429092.1 1 20081110 256136 Architeuthis dux mitochondrion AP004452.1 2 20050416 181474 Arcos sp. KU-149 mitochondrion AF513820.1 3 20050415 29084 Arctocephalus forsteri mitochondrion AM181018.1 3 20070821 37191 Arctocephalus pusillus mitochondrion AM181021.1 3 20070821 161921 Arctocephalus townsendi mitochondrion FM177762.1 1 20080731 551196 Arctodus simus mitochondrion AM919429.1 2 20100527 185735 Arctogadus glacialis mitochondrion HM106329.1 1 20110501 139309 Arctonyx collaris voucher YP6001 mitochondrion AP003090.1 8 20100907 148607 Arctoscopus japonicus mitochondrion GU324311.1 1 20100128 710733 Arcyptera coreana mitochondrion DQ780878.1 4 20061220 390973 Ardea novaehollandiae mitochondrion AY074885.2 4 20050527 54971 Arenaria interpres mitochondrion EU023915.1 1 20070718 31199 Argopecten irradians mitochondrion DQ665851.1 2 20100319 158587 Argopecten irradians irradians mitochondrion AY456187.1 5 20061208 260819 Argulus americanus mitochondrion JF439070.1 1 20110830 405014 Argynnis hyperbius mitochondrion AP010861.1 3 20110119 135220 Ariosoma shiroanago mitochondrion AY456186.1 4 20061114 260804 Armillifer armillatus mitochondrion AP006742.1 3 20090227 264149 Arothron firmamentum mitochondrion AP011930.1 2 20110708 300221 Arothron hispidus mitochondrion AP011929.1 2 20110708 300222 Arothron manilensis mitochondrion AP011931.1 3 20110908 300223 Arothron mappa mitochondrion AP006810.1 1 20110712 270544 Arripis trutta mitochondrion X69067.1 23 20050418 6661 Artemia franciscana mitochondrion FJ385029.1 1 20090618 119676 Arthroderma obtusum mitochondrion FJ385030.1 1 20090618 63405 Arthroderma otae mitochondrion FJ385028.1 1 20090618 74035 Arthroderma uncinatum mitochondrion AF061340.1 2 20050415 9417 Artibeus jamaicensis mitochondrion JN209840.1 1 20120202 27634 Artibeus lituratus mitochondrion FJ171324.1 2 20090327 559169 Ascaloptynx appendiculatus mitochondrion HQ704900.1 1 20120122 6252 Ascaris lumbricoides mitochondrion JN801161.1 2 20111202 6252 Ascaris lumbricoides mitochondrion HQ704901.1 1 20120122 6253 Ascaris suum mitochondrion X54253.1 81 20061114 6253 Ascaris suum mitochondrion AY345022.2 6 20090414 195875 Ascobulla fragilis mitochondrion AB300501.1 1 20080702 436354 Ascoschoengastia sp. TATW-1 mitochondrion DQ207726.1 3 20080326 5061 Aspergillus niger strain N909 mitochondrion AP007176.1 4 20110605 510516 Aspergillus oryzae RIB40 mitochondrion DQ217399.1 3 20070317 5068 Aspergillus tubingensis strain 0932 mitochondrion AP011335.1 1 20110513 553381 Aspidoparia morar mitochondrion AB183559.1 3 20050819 7602 Asterias amurensis mitochondrion DQ643832.1 2 20060616 388629 Astrangia sp. JVK-2006 mitochondrion AP012004.1 1 20110629 909838 Astroblepus sp. NM-2010 mitochondria AP009127.1 3 20081119 50733 Astronotus ocellatus mitochondrion AB183560.1 3 20050819 60560 Astropecten polyacanthus mitochondrion FN562580.1 2 20100602 691888 Astrospartus mediterraneus mitochondrion AP011982.1 1 20110629 7994 Astyanax mexicanus mitochondrial DNA AP009352.1 3 20081126 426587 Asymmetron inferum mitochondrion AB110092.1 3 20061114 223987 Asymmetron lucayanum mitochondrion AP009353.1 3 20081126 426588 Asymmetron sp. A TK-2007 mitochondrion AP010887.1 1 20090127 565089 Ataxolepis apus mitochondrion AP002916.1 2 20050416 143306 Ateleopus japonicus mitochondrion FJ785422.1 1 20090422 9507 Ateles belzebuth mitochondrion EU084035.1 2 20090515 459531 Atelura formicaria mitochondrion EU263919.1 1 20090101 244711 Atractomorpha sinensis mitochondrion AJ316582.1 5 20061114 33113 Atropa belladonna strain Ab5p(kan) chlororplast AP012005.1 1 20110629 390418 Auchenoglanis occidentalis mitochondrion AB445127.1 2 20090113 149088 Aulichthys japonicus mitochondrion AB047821.1 4 20100826 136300 Aulopus japonicus mitochondrion AP009196.1 2 20080116 240152 Aulorhynchus flavidus mitochondrion AP009197.1 2 20080116 150448 Aulostomus chinensis mitochondrion DQ787873.1 2 20061114 6145 Aurelia aurita mitochondrion HQ694729.1 2 20120102 6145 Aurelia aurita mitochondrion GQ231541.1 2 20100629 44056 Aureococcus anophagefferens chloroplast GQ231542.1 3 20100629 44058 Aureoumbra lagunensis chloroplast JN606066.1 1 20111024 999262 Auriculinella bidentata mitochondrion AP011917.1 2 20110708 862799 Auriglobus modestus mitochondrion AB103467.1 3 20080620 217026 Auxis rochei mitochondrion AB105447.1 3 20080620 13353 Auxis thazard mitochondrion AP010855.2 3 20110427 121280 Avocettina infans mitochondrion AY791693.1 3 20061114 153946 Axinella corrugata mitochondrion AF090337.1 5 20050527 30385 Aythya americana mitochondrion EU075182.1 2 20071214 5865 Babesia bovis mitochondrion EF014414.1 1 20070910 69614 Bactrocera carambolae mitochondrion JN635562.1 1 20110926 28588 Bactrocera cucurbitae mitochondrion DQ845759.1 1 20061231 27457 Bactrocera dorsalis mitochondrion HM776033.1 1 20100811 104690 Bactrocera minax mitochondrion AY210702.1 3 20050420 104688 Bactrocera oleae mitochondrion DQ917578.1 1 20070910 69547 Bactrocera papayae isolate SH63 mitochondrion DQ995281.1 1 20070910 86797 Bactrocera philippinensis mitochondrion HQ130030.1 1 20101018 59916 Bactrocera tryoni mitochondrion AP009578.1 1 20091130 492034 Bajacalifornia megalops mitochondrion AJ554051.1 4 20061114 27602 Balaena mysticetus mitochondrion AJ554054.1 4 20061114 9767 Balaenoptera acutorostrata mitochondrion AP006466.1 2 20050416 33556 Balaenoptera bonaerensis mitochondrion AP006470.1 2 20050416 9768 Balaenoptera borealis mitochondrion AP006469.1 2 20050416 255365 Balaenoptera brydei mitochondrion AB201259.1 3 20061114 255365 Balaenoptera brydei mitochondrion isolate:NSMT-33072 AB201258.1 4 20080119 9769 Balaenoptera edeni mitochondrion isolate:NSMT-33622 X72204.1 18 20061114 9771 Balaenoptera musculus mitochondrion AB201256.1 4 20080517 255217 Balaenoptera omurai mitochondrion X61145.1 59 20111005 9770 Balaenoptera physalus mitochondrion AF051097.1 4 20050415 35080 Balanoglossus carnosus mitochondrion FN562579.1 3 20100602 560604 Balanoglossus clavigerus mitochondrion FJ769842.1 1 20100301 30414 Balearica pavonina mitochondrion FJ769841.1 1 20100301 925459 Balearica regulorum mitochondrion AP009203.1 1 20090110 392899 Balistapus undulatus mitochondrion AP009204.1 1 20090110 303687 Balistes vetula mitochondrion AP009205.1 1 20090110 303689 Balistoides conspicillum mitochondrion HQ337797.1 1 20110627 280850 Bambusa emeiensis chloroplast FJ970915.1 1 20090707 58923 Bambusa oldhamii chloroplast FJ752423.1 4 20100615 388974 Bambusicola fytchii mitochondrion EU165706.1 2 20091009 9083 Bambusicola thoracica mitochondrion AP009370.1 1 20070414 50458 Barbarea verna chloroplast AB242162.1 2 20090215 357282 Barbatula toni mitochondrion AB238966.1 2 20090215 381606 Barbonymus gonionotus mitochondrion AP010879.1 1 20090127 88660 Barbourisia rufa mitochondrion AB238965.1 2 20090215 40830 Barbus barbus mitochondrion AB239600.1 2 20090215 137039 Barbus trimaculatus mitochondrion AP011433.1 1 20110513 209118 Barilius bendelisis mitochondrion AB218883.1 1 20090610 211979 Basiliscus vittatus mitochondrion AP004405.1 2 20050416 181397 Bassozetus zenkevitchi mitochondrion AP008988.1 1 20060621 332421 Bathygadus antrodes mitochondrion AP009400.1 1 20080620 443631 Bathyprion danae mitochondrion AP012225.1 1 20111202 61693 Bathyteuthis abyssicola mitochondrion AP009576.1 1 20091130 492029 Bathytroctes breviceps mitochondrion AP009577.1 1 20091130 492030 Bathytroctes macrolepis mitochondrion AP009579.1 1 20091130 492031 Bathytroctes michaelsarsi mitochondrion AP009401.1 1 20080620 443633 Bathytroctes microlepis mitochondrion AP006738.1 4 20061005 262770 Batrachomoeus trispinosus mitochondrion AY728228.1 2 20040922 159185 Batrachoseps attenuatus mitochondrion AY728221.1 2 20040922 57547 Batrachoseps wrighti mitochondrion DQ333809.1 1 20060511 156987 Batrachuperus londongensis mitochondrion DQ333815.1 1 20060511 156988 Batrachuperus pinchonii mitochondrion DQ333817.1 1 20060511 156989 Batrachuperus tibetanus mitochondrion DQ333818.1 1 20060511 156990 Batrachuperus yenyuanensis mitochondrion HQ671080.1 1 20110810 941948 Baylisascaris ailuri mitochondrion JF951366.1 1 20111107 6259 Baylisascaris procyonis mitochondrion HQ671081.1 1 20110810 522413 Baylisascaris schroederi mitochondrion HQ671079.1 1 20110810 6260 Baylisascaris transfuga mitochondrion AY521259.2 5 20061114 7038 Bemisia tabaci mitochondrion EF055880.1 1 20101001 407255 Benedenia hoshinai mitochondrion HM222526.1 1 20100609 160838 Benedenia seriolae mitochondrion AJ554057.1 4 20061114 48742 Berardius bairdii mitochondrion DQ991929.1 2 20110429 407122 Berthellina sp. TLT-2006 mitochondrion AP004430.1 2 20050416 107241 Beryx decadactylus mitochondrion DQ993168.1 3 20101005 182780 Beryx mollis mitochondrion AP002939.1 2 20050416 88663 Beryx splendens mitochondrion FQ378026.1 1 20110905 343494 Beta macrocarpa mitochondrion FP885845.1 3 20110907 350892 Beta vulgaris subsp. maritima genotype male-fertile A mitochondrion FP885834.1 3 20110907 350892 Beta vulgaris subsp. maritima genotype male-fertile B mitochondrion X04983.1 3 20000216 3555 Beta vulgaris subsp. vulgaris mitochondrial plasmid a X00641.1 2 20000216 3555 Beta vulgaris subsp. vulgaris mitochondrial plasmid pO BA000009.3 9 20071017 3555 Beta vulgaris subsp. vulgaris mitochondrion DQ851108.1 4 20061220 227086 Bigelowiella natans plastid EU084034.1 1 20080831 106915 Bilobella aurantiaca mitochondrion AY380531.1 4 20061114 6526 Biomphalaria glabrata mitochondrion strain 1742 AY380567.1 6 20081224 6526 Biomphalaria glabrata mitochondrion strain M-line EF433576.1 2 20080101 112528 Biomphalaria tenagophila mitochondrion AY605480.1 3 20061114 52188 Bipes biporus mitochondrion voucher MVZ 236257 AY605481.1 2 20061114 52188 Bipes biporus mitochondrion voucher MVZ 236258 AY605482.1 2 20040922 273521 Bipes canaliculatus mitochondrion AY605477.1 1 20040829 273520 Bipes tridactylus mitochondrion EU177871.1 1 20080311 9901 Bison bison mitochondrion GU946977.1 1 20101130 9901 Bison bison mitochondrion, isolate B853 GU946978.1 1 20101130 9901 Bison bison mitochondrion, isolate b854 GU946979.1 1 20101130 9901 Bison bison mitochondrion, isolate B855 GU946980.1 1 20101130 9901 Bison bison mitochondrion, isolate B877 GU946981.1 1 20101130 9901 Bison bison mitochondrion, isolate B880 GU946982.1 1 20101130 9901 Bison bison mitochondrion, isolate B897 GU946983.1 1 20101130 9901 Bison bison mitochondrion, isolate B925 GU946984.1 1 20101130 9901 Bison bison mitochondrion, isolate B929 GU946985.1 1 20101130 9901 Bison bison mitochondrion, isolate B935 GU946986.1 1 20101130 9901 Bison bison mitochondrion, isolate B959 GU946987.1 1 20101130 9901 Bison bison mitochondrion, isolate B961 GU946988.1 1 20101130 9901 Bison bison mitochondrion, isolate B973 GU946989.1 1 20101130 9901 Bison bison mitochondrion, isolate B979 GU946990.1 1 20101130 9901 Bison bison mitochondrion, isolate B985 GU946991.1 1 20101130 9901 Bison bison mitochondrion, isolate B1005 GU946992.1 1 20101130 9901 Bison bison mitochondrion, isolate B1018 GU946993.1 1 20101130 9901 Bison bison mitochondrion, isolate B1029 GU946994.1 1 20101130 9901 Bison bison mitochondrion, isolate B1031 GU946995.1 1 20101130 9901 Bison bison mitochondrion, isolate B1050 GU946996.1 1 20101130 9901 Bison bison mitochondrion, isolate B1051 GU946997.1 1 20101130 9901 Bison bison mitochondrion, isolate B1091 GU946998.1 1 20101130 9901 Bison bison mitochondrion, isolate B1191 GU946999.1 1 20101130 9901 Bison bison mitochondrion, isolate B1428 GU947000.1 1 20101130 9901 Bison bison mitochondrion, isolate BFN5 GU947001.1 1 20101130 9901 Bison bison mitochondrion, isolate BNBR1 GU947002.1 1 20101130 9901 Bison bison mitochondrion, isolate BTSBH1001 GU947003.1 1 20101130 9901 Bison bison mitochondrion, isolate BTSBH1005 GU947005.1 1 20101130 9901 Bison bison mitochondrion, isolate wElkIsland1 GU947006.1 1 20101130 9901 Bison bison mitochondrion, isolate wElkIsland14 GU947004.1 1 20101130 9901 Bison bison mitochondrion,, isolate BYNP1586 GU946976.1 1 20101130 9901 Bison bison mitochondrion,isolate B790 HM045017.1 1 20100421 9902 Bison bonasus mitochondrion HQ696578.1 2 20110825 172808 Bittacus pilicornis mitochondrion AB250107.1 3 20081008 143612 Biwia zezera mitochondrion EU443257.1 1 20081216 227091 Blanus cinereus mitochondrion DQ287690.1 2 20090623 4808 Blastocladiella emersonii mitochondrion EF494739.2 5 20110308 463136 Blastocystis sp. DMP/02-328 mitochondrion EF494740.2 5 20110308 463137 Blastocystis sp. NandII mitochondrion EU854321.1 1 20090630 6973 Blattella germanica mitochondrion AY189817.1 3 20070823 62688 Blumeria graminis f. sp. hordei linear mitochondrial plasmid pBgh AB177354.1 5 20080926 8574 Boa constrictor mitochondrion JN107811.1 2 20111214 472368 Boea hygrometrica chloroplast JN107812.1 1 20111207 472368 Boea hygrometrica mitochondrion JN631352.1 1 20111101 150288 Boleophthalmus pectinirostris mitochondrion EU827194.1 1 20090918 179646 Bolinus brandaris mitochondrion AY728235.1 2 20040922 291262 Bolitoglossa n. sp. RLM-2004 mitochondrion AY458591.1 3 20061208 8345 Bombina bombina mitochondrion EU789363.1 1 20080713 161274 Bombina maxima mitochondrion AY585338.1 3 20061114 8346 Bombina orientalis mitochondrion AY971143.1 1 20070323 8348 Bombina variegata mitochondrion EU401918.1 2 20110916 1079038 Bombus hypocrita sapporensis mitochondrion, DQ870926.1 1 20070406 130704 Bombus ignitus mitochondrion AB070263.1 4 20061114 7092 Bombyx mandarina mitochondrion AB070264.1 7 20090703 7091 Bombyx mori mitochondrion strain C-108 AF149768.1 6 20060825 7091 Bombyx mori mitochondrion AB624361.1 2 20120207 288456 Bombyx mori Macula-like virus genomic RNA FJ752435.1 4 20100615 64669 Bonasa bonasia mitochondrion AP011420.1 1 20110513 432404 Boraras maculatus mitochondrion, except for D-loop AM919428.1 2 20100527 44932 Boreogadus saida mitochondrion HQ696579.1 2 20110825 948611 Boreus elegans mitochondrion EF494179.1 1 20070420 30521 Bos grunniens mitochondrion AY126697.1 2 20050416 9915 Bos indicus mitochondrion FJ997262.1 1 20090517 9906 Bos javanicus mitochondrion GU985279.1 1 20100401 9909 Bos primigenius mitochondrion AY526085.1 4 20061114 9913 Bos taurus mitochondrion GU947019.1 1 20101130 9913 Bos taurus mitochondrion, isolate CB86 GU947020.1 1 20101130 9913 Bos taurus mitochondrion, isolate CB86Clone GU947021.1 1 20101130 9913 Bos taurus mitochondrion, isolate CLH_19 GU947007.1 1 20101130 9913 Bos taurus mitochondrion, isolate H914 GU947008.1 1 20101130 9913 Bos taurus mitochondrion, isolate H941 GU947009.1 1 20101130 9913 Bos taurus mitochondrion, isolate H974 GU947010.1 1 20101130 9913 Bos taurus mitochondrion, isolate H990 GU947011.1 1 20101130 9913 Bos taurus mitochondrion, isolate H1002 GU947012.1 1 20101130 9913 Bos taurus mitochondrion, isolate H1033 GU947013.1 1 20101130 9913 Bos taurus mitochondrion, isolate H1037 GU947014.1 1 20101130 9913 Bos taurus mitochondrion, isolate H1065 GU947015.1 1 20101130 9913 Bos taurus mitochondrion, isolate H1107 GU947016.1 1 20101130 9913 Bos taurus mitochondrion, isolate H1201 GU947017.1 1 20101130 9913 Bos taurus mitochondrion, isolate H1207 GU947018.1 1 20101130 9913 Bos taurus mitochondrion, isolate H1389 HQ184038.1 1 20110128 9913 Bos taurus, isolate Cab1 mitochondrion HQ184039.1 1 20110128 9913 Bos taurus, isolate Chi466 mitochondrion HQ184030.1 1 20110128 9913 Bos taurus, isolate Chi467 mitochondrion HQ184031.1 1 20110128 9913 Bos taurus, isolate Chi490 mitochondrion HQ184032.1 1 20110128 9913 Bos taurus, isolate Chi597 mitochondrion HQ184036.1 1 20110128 9913 Bos taurus, isolate Ga15 mitochondrion HQ184037.1 1 20110128 9913 Bos taurus, isolate Ga16 mitochondrion HQ184045.1 1 20110128 9913 Bos taurus, isolate Mcg375 mitochondrion HQ184040.1 1 20110128 9913 Bos taurus, isolate Rom498 mitochondrion HQ184034.1 1 20110128 9913 Bos taurus, isolate Rom534 mitochondrion HQ184033.1 1 20110128 9913 Bos taurus, isolate Rom550 mitochondrion HQ184042.1 1 20110128 9913 Bos taurus, isolate Rom561 mitochondrion HQ184043.1 1 20110128 9913 Bos taurus, isolate Rom584 mitochondrion HQ184035.1 1 20110128 9913 Bos taurus, isolate Rom590 mitochondrion HQ184044.1 1 20110128 9913 Bos taurus, isolate Rom600 mitochondrion HQ184041.1 1 20110128 9913 Bos taurus,isolate Rom553 mitochondrion EU183542.1 1 20071116 475769 Bothriometopus macrocnemis mitochondrion AY691655.1 1 20070512 292347 Bothropolys sp. SP-2004 mitochondrion AP011568.1 1 20110111 91717 Boulengeromyrus knoepffleri mitochondrial DNA GQ244464.1 1 20090922 260983 Boulengerula boulengeri mitochondrion AY954504.1 1 20090924 102246 Boulengerula taitana mitochondrion AP009215.1 1 20090110 392911 Brachaluteres ulvarum mitochondrion AP009408.1 2 20080520 10195 Brachionus plicatilis mitochondrion AP009407.1 2 20080520 10195 Brachionus plicatilis mitochondrion, note: Bp-mtDNA-I AP011570.1 1 20110111 77838 Brachyhypopomus pinnicaudatus mitochondrion EU325680.1 2 20090819 15368 Brachypodium distachyon chloroplast AY960979.1 1 20050326 9354 Bradypus tridactylus mitochondrion EU861053.1 2 20101105 545417 Branchiostegus albus mitochondrion EU861054.1 2 20101105 545418 Branchiostegus argentatus mitochondrion EU861052.1 2 20101105 270562 Branchiostegus japonicus mitochondrion AB078191.1 3 20060613 7741 Branchiostoma belcheri mitochondrion AF098298.1 3 20050415 7739 Branchiostoma floridae mitochondrion DQ407722.1 2 20110722 373177 Branchiostoma japonicum strain Xiamen mitochondrion Y16474.1 3 20050418 7740 Branchiostoma lanceolatum mitochondrion DQ019124.1 2 20050510 8853 Branta canadensis haplotype GCC-A mitochondrion JF920287.1 1 20111020 52824 Brassica carinata mitochondrion JF920288.1 1 20111020 3707 Brassica juncea mitochondrion GQ861354.1 3 20110809 3708 Brassica napus chloroplast AB073400.1 2 20070823 3708 Brassica napus linear mitochondrial plasmid AP006444.1 7 20080906 3708 Brassica napus mitochondrion FR715249.1 2 20110718 3708 Brassica napus mitochondrion, cultivar Polima, isolate NH12A JF920286.1 1 20111020 3712 Brassica oleracea mitochondrion JF920285.1 1 20111020 439823 Brassica rapa subsp. campestris mitochondrion GQ354525.2 3 20100713 13368 Brettanomyces custersianus mitochondrion AP009618.1 1 20100627 224708 Brevoortia tyrannus mitochondrion DQ640649.1 3 20060616 86543 Briareum asbestinum mitochondrion AP011569.1 1 20110111 42636 Brienomyrus brachyistius mitochondrial DNA AP008929.1 2 20101229 42637 Brienomyrus niger mitochondrion AB474914.1 1 20100601 587619 Brookesia decaryi mitochondrion EF222187.1 3 20090326 179895 Brookesia superciliaris mitochondrion, partial HM627323.1 1 20110506 671079 Brotogeris cyanoptera mitochondrion GQ892829.1 2 20110707 222885 Bryopsis hypnoides chloroplast AY702618.1 2 20061005 89462 Bubalus bubalis mitochondrion HM640209.1 2 20110527 155086 Bucorvus leadbeateri mitochondrion FJ006534.1 1 20090731 37181 Budorcas taxicolor mitochondrion AB127977.1 5 20061114 191197 Buergeria buergeri mitochondrion DQ275350.1 1 20060928 30331 Bufo gargarizans mitochondrion AB303363.1 3 20080109 8387 Bufo japonicus mitochondrion AY458592.1 2 20050708 30335 Bufo melanostictus mitochondrion AB282841.1 1 20100218 412633 Bufoceratias thele mitochondrion AY690838.1 2 20090517 10212 Bugula neritina mitochondrion EU579523.1 1 20081019 8613 Bungarus fasciatus mitochondrion EU579522.1 1 20081019 8616 Bungarus multicinctus mitochondrion AP012006.1 1 20110629 385276 Bunocephalus coracoideus mitochondrion FJ483517.1 1 20090323 577651 Bunostomum phlebotomum mitochondrion AF380305.2 3 20050415 30397 Buteo buteo mitochondrion EU523755.1 1 20080401 6868 Buthus occitanus mitochondrion EF380351.1 2 20090218 153571 Buxus microphylla chloroplast HM640210.1 2 20110527 175843 Bycanistes brevis mitochondrion JF414239.1 2 20110525 136504 Cacatua moluccensis mitochondrion GQ244466.1 1 20090922 543901 Caecilia volcani mitochondrion AJ508400.1 5 20061121 37696 Caenolestes fuliginosus mitochondrion AC186293.1 1 20060512 6238 Caenorhabditis briggsae mitochondrion AB167462.1 2 20061114 6239 Caenorhabditis elegans mitochondrion AF193903.1 4 20061114 33653 Cafeteria roenbergensis mitochondrion AJ404872.2 6 20061114 8499 Caiman crocodilus mitochondrion EU755254.1 1 20080609 8855 Cairina moschata mitochondrion GU047880.1 4 20120102 58798 Calicogorgia granulosa mitochondrion HQ658143.1 1 20110501 942733 Calinaga davidis mitochondrion FJ785423.1 1 20090422 230833 Callicebus donacophilus mitochondrion AY363392.1 2 20050522 6763 Callinectes sapidus mitochondrion EU938373.1 1 20080930 334752 Calliptamus italicus mitochondrion HM147135.1 2 20101021 7867 Callorhinchus callorynchus mitochondrion HM147136.1 2 20101021 765184 Callorhinchus capensis mitochondrion HM147137.1 2 20101021 7868 Callorhinchus milii mitochondrion AM181016.1 3 20070821 34884 Callorhinus ursinus mitochondrion EU237477.1 2 20080221 178539 Callyspongia plicifera mitochondrion GU176340.1 1 20100713 696089 Calosoma sp. BYU-CO241 mitochondrion AB183287.1 2 20080924 48253 Calotes versicolor mitochondrion AB474915.1 1 20100601 179907 Calumma parsonii mitochondrion AJ428413.1 4 20050415 212734 Calycanthus floridus var. glaucus chloroplast JF414242.1 2 20110525 986099 Calyptorhynchus baudinii mitochondrion JF414241.1 2 20110525 986098 Calyptorhynchus lathami mitochondrion JF414243.1 2 20110525 314228 Calyptorhynchus latirostris mitochondrion EF212037.2 5 20090730 9837 Camelus bactrianus isolate D1 mitochondrion EU159113.1 1 20070925 9838 Camelus dromedarius mitochondrion EF212038.2 5 20090730 419612 Camelus ferus AY968672.1 2 20060311 135595 Campanulotes bidentatus compar mitochondrion DQ529236.1 2 20060928 383857 Campodea fragilis mitochondrion DQ529237.1 2 20060928 383858 Campodea lubbocki mitochondrion DQ536421.1 2 20060719 61318 Campostoma anomalum mitochondrion AP011571.1 1 20110111 112143 Campylomormyrus numenius mitochondrial DNA EU827195.1 1 20090918 543397 Cancellaria cancellata mitochondrion HQ267968.1 3 20110707 434040 Candida alai culture-collection NRRL:Y-27739 mitochondrion AF285261.1 3 20050415 237561 Candida albicans SC5314 mitochondrion FR877633.1 1 20111016 479092 Candida alimentaria mitochondrion, isolate CBS 10151 FM995165.1 2 20091106 51914 Candida castellii mitochondrion FR877635.1 1 20111016 184778 Candida deformans mitochondrion, isolate CBS 2071 HM594866.1 2 20110707 434044 Candida frijolesensis strain NRRL Y-48060 mitochondrion FR877636.1 1 20111016 197054 Candida galli mitochondrion, isolate CBS 9722 AJ511533.1 4 20050415 5478 Candida glabrata mitochondrion GU136397.1 3 20110707 497108 Candida jiufengensis mitochondrion EU267175.1 1 20091231 5479 Candida maltosa mitochondrion AY962591.1 4 20061114 273372 Candida metapsilosis strain MCO448 mitochondrion EU334437.1 2 20090123 148634 Candida neerlandica strain NRRL Y-27057 mitochondrion AY962590.1 3 20061114 273371 Candida orthopsilosis strain MCO456 mitochondrion X74411.6 15 20070718 5480 Candida parapsilosis mitochondrion FR877634.1 1 20111016 444778 Candida phangngensis mitochondrion, isolate CBS 10407 HQ267969.1 1 20101115 49332 Candida salmanticensis culture-collection CBS:5121 mitochondrion EF468347.1 1 20091231 52253 Candida sojae mitochondrion GU126492.1 1 20100706 561895 Candida subhashii mitochondrion EF536359.1 1 20091231 5486 Candida viswanathii mitochondrion AY445918.1 4 20080213 186762 Candida zemplinina mitochondrion DQ480509.1 3 20090325 9614 Canis latrans from Nebraska mitochondrion DQ480505.1 3 20090325 9612 Canis lupus EU442884.2 2 20080314 246881 Canis lupus chanco mitochondrion DQ480489.1 3 20090325 9615 Canis lupus familiaris breed German Shepherd mitochondrion U96639.2 3 20050418 9615 Canis lupus familiaris mitochondrion FJ032363.2 3 20090531 554455 Canis lupus laniger mitochondrion AM711902.1 2 20080320 443256 Canis lupus lupus mitochondrion AP009184.1 3 20110726 1003697 Cantherhines pardalis mitochondrion AP009206.1 1 20090110 303691 Canthidermis maculata mitochondrion AP006743.1 3 20090227 264150 Canthigaster coronata mitochondrion AP011911.1 2 20110708 223139 Canthigaster jactator mitochondrion AP006744.1 3 20090227 264151 Canthigaster rivulata mitochondrion AP011912.1 2 20110708 223152 Canthigaster valentini mitochondrion AJ554052.1 4 20061114 27604 Caperea marginata mitochondrion AY514042.1 1 20061230 41070 Capitulum mitella mitochondrion FJ207525.1 1 20090428 48167 Capra falconeri mitochondrion FJ207526.1 1 20090428 72542 Capra ibex mitochondrion FJ207527.1 1 20090428 72543 Capra nubiana mitochondrion FJ207528.1 1 20090428 80419 Capra pyrenaica mitochondrion FJ207529.1 1 20090428 72544 Capra sibirica mitochondrion GU130250.1 1 20100908 380747 Caprella mutica mitochondrion AB539699.1 1 20101028 703580 Caprella scaura mitochondrion AP003429.1 1 20090224 9966 Capricornis crispus mitochondrion FJ207534.1 1 20090428 34865 Capricornis sumatraensis mitochondrion EF558665.1 1 20080508 34866 Capricornis swinhoei mitochondrion AP009371.1 1 20070414 3719 Capsella bursa-pastoris chloroplast AP004444.1 2 20050416 181460 Carangoides armatus mitochondrion AP004445.1 2 20050416 181461 Caranx melampygus mitochondrion AP004404.1 2 20050416 181393 Carapus bermudensis mitochondrion AB006953.1 8 20050414 7957 Carassius auratus mitochondrion AB111951.1 3 20080510 145527 Carassius auratus auratus mitochondrion HQ875340.1 1 20110213 763460 Carassius auratus ssp. 'Pingxiang' mitochondrion AY694420.1 3 20070604 211488 Carassius auratus x Cyprinus carpio mitochondrion AY771781.1 2 20060325 211491 Carassius auratus x Cyprinus carpio x Carassius cuvieri mitochondrion GQ903707.1 2 20101031 678552 Carassius auratus x Megalobrama amblycephala pentaploid hybrid mitochondrion GQ903705.1 1 20091012 678550 Carassius auratus x Megalobrama amblycephala tetraploid hybrid mitochondrion GQ903706.1 1 20091012 678551 Carassius auratus x Megalobrama amblycephala triploid hybrid mitochondrion AY714387.1 2 20070604 217509 Carassius carassius mitochondrion AB045144.1 4 20080510 52617 Carassius cuvieri mitochondrion JF496198.1 1 20110321 101364 Carassius gibelio clone A mitochondrion JF496197.1 1 20110321 101364 Carassius gibelio clone D mitochondrion GU170401.1 1 20100519 101364 Carassius gibelio mitochondrion HQ915865.1 1 20110302 36253 Carduelis sinica mitochondrion HQ915866.1 1 20110302 160760 Carduelis spinus mitochondrion FJ862792.1 1 20100421 44489 Carettochelys insculpta mitochondrion EU431223.1 2 20080326 3649 Carica papaya chloroplast EU431224.1 11 20101119 3649 Carica papaya mitochondrion AP011918.1 2 20110708 500395 Carinotetraodon lorteti mitochondrion AP011919.1 2 20110708 862789 Carinotetraodon salivator mitochondrion AB075953.1 3 20061114 176285 Carios capensismitochondrion AP011983.1 1 20110629 642546 Carnegiella strigata mitochondrial DNA AY366087.1 3 20060719 154811 Carpiodes carpio mitochondrion JN700936.1 1 20111211 237412 Cassiopea frondosa mitochondrion HQ336406.1 2 20110210 60419 Castanea mollissima chloroplast FR691684.1 1 20110203 51338 Castor canadensis mitochondrion FR691685.1 1 20110203 10185 Castor fiber mitochondrion, isolate al M85 FR691687.1 1 20110203 10185 Castor fiber mitochondrion, isolate bi 121 FR691686.1 1 20110203 10185 Castor fiber mitochondrion, isolate in 86 FR691689.1 1 20110203 10185 Castor fiber mitochondrion, isolate po 134 FR691688.1 1 20110203 10185 Castor fiber mitochondrion, isolate tu 161 AF338713.2 6 20050527 8787 Casuarius casuarius mitochondrion AP004407.1 2 20050416 181404 Cataetyx rubrirostris mitochondrion AY463690.1 3 20061121 43455 Cathartes aura mitochondrion AB547400.1 1 20100927 64686 Cathaya argyrophylla chloroplast AB127394.1 2 20090215 7971 Catostomus commersonii mitochondrion AP004417.1 3 20100219 717990 Caulophryne jordani mitochondrion GU045452.1 1 20091102 88081 Causus defilippi mitochondrion AJ222767.1 3 20061114 10141 Cavia porcellus mitochondrion AJ309866.1 4 20061114 9514 Cebus albifrons mitochondrion JN380205.1 1 20120102 9515 Cebus apella mitochondrion AB480043.1 1 20100927 3322 Cedrus deodara chloroplast AP012024.1 1 20110629 909845 Centromochlus perugiae mitochondrion AP006006.1 2 20090110 586789 Centropyge loricula mitochondrion AY803353.1 3 20051026 6876 Centruroides limpidus mitochondrion U23045.1 14 20110718 28835 Cepaea nemoralis mitochondrion FJ594739.1 1 20090618 187810 Cephalothrix simula mitochondrion GU564482.1 2 20110904 743460 Cephalothrix sp. SCS-2010 mitochondrion FJ478173.1 3 20090612 211228 Cephus cinctus mitochondrion AB282851.1 1 20100218 412660 Ceratias uranoscopus mitochondrion AJ242872.1 8 20061114 7213 Ceratitis capitata mitochondrion EF614270.1 3 20081126 4428 Ceratophyllum demersum chloroplast Y07726.1 12 20061114 9807 Ceratotherium simum mitochondrion AB245427.2 2 20091114 9860 Cervus elaphus mitochondrion HQ191429.1 1 20101028 84701 Cervus elaphus songaricus mitochondrion GU457434.1 1 20100208 9865 Cervus elaphus xanthopygus mitochondrion GU457435.1 1 20100208 84702 Cervus elaphus yarkandensis mitochondrion AB211429.1 3 20081229 151525 Cervus nippon centralis mitochondrion GU457433.1 1 20100208 92866 Cervus nippon hortulorum mitochondrion HQ832482.1 1 20111101 501781 Cervus nippon kopschi mitochondrion DQ985076.1 1 20061010 37550 Cervus nippon taiouanus mitochondrion AB218689.1 3 20081229 332176 Cervus nippon yakushimae mitochondrion AB210267.2 5 20081229 223998 Cervus nippon yesoensis mitochondrion AP010881.1 1 20090127 565076 Cetomimus sp. AMS I34481001 mitochondrion AP012007.1 1 20110629 909839 Cetopsidium sp. NM-2010 mitochondrial DNA AP004423.1 2 20050416 88671 Cetostoma regani mitochondrion GQ888721.1 1 20100213 63233 Chabertia ovina mitochondrion AP012008.1 1 20110629 909840 Chaca bankanensis mitochondrial DNA EF211990.1 1 20100202 256131 Chaetoderma nitidulum mitochondrion AP009216.1 1 20090110 392913 Chaetodermis penicilligerus mitochondrion AP006004.1 1 20070920 215361 Chaetodon auripes mitochondrion AP006007.1 1 20070920 215363 Chaetodontoplus septentrionalis mitochondrion JN007486.1 2 20110904 759272 Chaetomium thermophilum var. thermophilum DSM 1495 mitochondrion EU877951.1 2 20081031 546502 Chaetosoma scaritides mitochondrion AF494278.1 4 20061114 96477 Chaetosphaeridium globosum chloroplast AF494279.1 4 20061114 96477 Chaetosphaeridium globosum mitochondrial DNA AB266748.1 1 20090610 44147 Chalarodon madagascariensis mitochondrion AB054130.1 5 20090215 42552 Chalceus macrolepidotus mitochondrion AF321051.1 4 20050415 143942 Chalinolobus tuberculatus mitochondrion EF222196.1 2 20090403 91906 Chamaeleo africanus mitochondrion EF222193.1 3 20090326 420385 Chamaeleo arabicus mitochondrion EF222195.1 3 20090326 420386 Chamaeleo calcaricarens mitochondrion EF222192.1 3 20090326 179908 Chamaeleo calyptratus mitochondrion EF222198.1 3 20090326 91907 Chamaeleo chamaeleon mitochondrion EF222189.1 3 20090326 91908 Chamaeleo dilepis mitochondrion EF222190.1 3 20090326 420383 Chamaeleo monachus mitochondrion EF222191.1 3 20090326 420384 Chamaeleo zeylanicus mitochondrion HM773029.1 1 20100907 871019 Chandlerella quiscali mitochondrion GU937112.1 2 20111202 215402 Channa argus mitochondrion AP009060.1 1 20061211 291816 Chanodichthys mongolicus mitochondrion DQ229107.1 2 20061114 55564 Chara vulgaris chloroplast AY267353.1 3 20061114 55564 Chara vulgaris mitochondrion FJ460517.1 2 20100702 80839 Charybdis japonica mitochondrion AB546636.1 2 20100907 90936 Chattonella marina mitochondrion AP002915.1 2 20050416 68509 Chauliodus sloani mitochondrion FJ613418.1 2 20091120 528223 Chauliognathus opacus mitochondrion AP004415.1 2 20050416 181417 Chaunax abei mitochondrion AB282833.1 1 20100218 242967 Chaunax pictus mitochondrion AP004416.1 2 20050416 181418 Chaunax tosaensis mitochondrion HM778032.1 2 20110831 531291 Cheilanthes lindheimeri chloroplast GU296101.1 1 20100111 241271 Cheilinus undulatus mitochondrion HQ172157.1 1 20110816 44493 Chelodina rugosa mitochondrion AB012104.1 8 20080924 8469 Chelonia mydas mitochondrion AP009541.1 2 20090227 300230 Chelonodon patoca mitochondrion HQ172156.1 1 20110816 44495 Chelus fimbriata mitochondrion EF122793.1 2 20080904 8475 Chelydra serpentina mitochondrion X58911.1 48 20040909 3559 Chenopodium album mitochondrial plasmid mp1 AY383557.2 3 20050416 6723 Cherax destructor mitochondrion HQ860290.1 2 20110830 168631 Chilo suppressalis mitochondrion JF339041.1 1 20110527 168631 Chilo suppressalis mitochondrion,collected 06/06/2010 China AP011984.1 1 20110629 303996 Chilodus punctatus mitochondrion AP009188.1 2 20110726 388628 Chilomycterus reticulatus mitochondrion FJ853422.1 1 20090409 36176 Chiloscyllium plagiosum mitochondrion JQ082337.1 1 20120116 137246 Chiloscyllium punctatum mitochondrion HM147138.1 2 20101021 765187 Chimaera fulva mitochondrion AJ310140.1 4 20061114 7871 Chimaera monstrosa mitochondrion AY676201.1 2 20061114 284239 Chinemys reevesi mitochondrion DQ526430.1 2 20080514 70433 Chionodraco myersi mitochondrion AP006229.1 3 20050826 221863 Chirocentrus dorab mitochondrion (partial) JN861749.1 1 20111113 113505 Chironomus tepperi mitochondrion AP008921.1 2 20101229 311466 Chitala blanci mitochondrion AP008922.1 2 20101229 311467 Chitala lopis mitochondrion AP008923.1 2 20101229 112145 Chitala ornata mitochondrion AF008237.1 5 20070910 3054 Chlamydomonas moewusii mitochondrion U03843.1 10 20061114 3055 Chlamydomonas reinhardtii mitochondrion FJ423446.1 2 20090610 3055 Chlamydomonas reinhardtii strain CC-503 cw92 mt+ chloroplast BK000554.2 7 20061114 3055 TPA: Chlamydomonas reinhardtii chloroplast EF090421.1 3 20081216 103699 Chlamydosaurus kingii mitochondrion EU715252.2 3 20101207 202578 Chlamys farreri isolate Zhikong mitochondrion EF473269.1 2 20100319 202578 Chlamys farreri mitochondrion EF380352.1 1 20070624 13006 Chloranthus spicatus chloroplast HQ914635.1 1 20110401 554065 Chlorella variabilis plastid AB001684.1 7 20061114 3077 Chlorella vulgaris chloroplast AY863426.1 2 20050506 9534 Chlorocebus aethiops mitochondrion EF597500.1 5 20090326 60710 Chlorocebus pygerythrus mitochondrion DQ069713.1 1 20060603 60711 Chlorocebus sabaeus mitochondrion EF597502.1 4 20090326 60712 Chlorocebus tantalus mitochondrion DQ422812.2 6 20081224 3144 Chlorokybus atmophyticus chloroplast EF463011.1 3 20081126 3144 Chlorokybus atmophyticus strain SAG 48.80 mitochondrion AP002918.1 2 20050416 143313 Chlorophthalmus agassizi mitochondrion AP006567.1 3 20050416 126671 Chlorurus sordidus mitochondrion AY960980.1 2 20050417 27675 Choloepus didactylus mitochondrion EU237478.1 2 20080221 479638 Chondrilla aff. nucula CHOND mitochondrion DQ536427.1 2 20060719 77803 Chondrostoma lemmingii mitochondrion Z47547.1 21 20100614 2769 Chondrus crispus mitochondrion EU029161.1 1 20080730 454920 Chorthippus chinensis mitochondrion HM222967.1 2 20100715 505693 Chromera velia chloroplast HM222968.1 1 20100708 348535 Chromerida sp. RM11 chloroplast AB242163.1 2 20090215 322131 Chromobotia macracanthus mitochondrion DQ991931.1 2 20110429 262608 Chromodoris magnifica mitochondrion HQ694730.1 2 20120102 6148 Chrysaora quinquecirrha mitochondrion AF069423.1 6 20050415 8479 Chrysemys picta mitochondrion AP012009.1 1 20110629 909841 Chrysichthys sp. NM-2010 mitochondrial DNA AB096866.1 3 20050414 185453 Chrysochloris asiatica mitochondrion EU826485.1 1 20090603 543396 Chrysochroa fulgidissima mitochondrion AF222718.1 8 20061114 47573 Chrysodidymus synuroideus mitochondrion FJ752434.1 4 20100615 9088 Chrysolophus amherstiae mitochondrion HQ221859.1 1 20100922 9089 Chrysolophus pictus mitochondrion AF352790.1 7 20100213 235600 Chrysomya putoria mitochondrion DQ304771.1 3 20070311 359504 Chrysopathes formosa mitochondrion AP011623.1 1 20110114 413239 Chrysoperla nipponensis mitochondrion EU835853.1 2 20080911 3827 Cicer arietinum chloroplast AB026193.1 2 20050414 52775 Ciconia boyciana mitochondrion AB026818.1 2 20050414 8928 Ciconia ciconia mitochondrion EU237479.1 2 20090113 458489 Cinachyrella kuekenthali mitochondrion AJ517314.2 5 20050415 7719 Ciona intestinalis mitochondrion AM292218.1 1 20070829 413601 Ciona intestinalis B CG-2006 mitochondrion AB079784.1 5 20060227 51511 Ciona savignyi mitochondrion AP011985.1 1 20110629 42556 Citharinus congicus mitochondrion GQ856147.1 4 20101203 3654 Citrullus lanatus mitochondrion DQ864733.1 2 20061114 2711 Citrus sinensis chloroplast AP012010.1 1 20110629 909842 Clarias sp. NM-2010 mitochondrion JN700935.1 1 20111211 498518 Clava multicornis mitochondrion AM292603.2 1 20091127 159417 Clavelina lepadiformis complete mitochondrion FJ839918.1 2 20100509 159417 Clavelina lepadiformis mitochondrion FN436007.1 1 20100609 666146 Cleome leaf crumple virus associated DNA 1 FJ848374.1 1 20091231 304258 Clinocottus analis mitochondrion JF729303.1 1 20110807 79923 Clonorchis sinensis from China mitochondrion FJ381664.2 4 20100702 79923 Clonorchis sinensis mitochondrion JF729304.1 1 20110807 79923 Clonorchis sinensis mitochondrion, isolation source Korea AP009133.1 1 20070612 7950 Clupea harengus mitochondrion AP009134.1 2 20070621 30724 Clupea pallasii mitochondrion AP011584.1 1 20120106 689640 Clupeichthys aesarnensis mitochondrion AP011585.1 1 20120106 689641 Clupeichthys perakensis mitochondrion AP011586.1 1 20120106 689646 Clupeoides borneensis mitochondrion AP011587.1 1 20120106 689647 Clupeoides sp. Chao Phraya mitochondrion AP009615.1 1 20110111 501719 Clupeonella cultriventris mitochondrion AY741661.1 2 20050106 292503 Clymenella torquata mitochondrion JN246082.1 1 20110906 437488 Cnaphalocrocis medinalis mitochondrion AY596278.1 2 20061121 183540 Cnemotriccus fuscatus mitochondrion EU656112.2 3 20081112 457511 Cobitis choii mitochondrion AY526868.1 1 20050731 143401 Cobitis sinensis mitochondrion AB054125.1 6 20091028 149980 Cobitis striata mitochondrion AP009306.1 1 20100713 118131 Cobitis takatsuensis mitochondrion HQ874522.1 1 20110307 574566 Coccomyxa subellipsoidea C-169 mitochondrion HQ693844.1 1 20110203 574566 Coccomyxa subellipsoidea C-169 plastid AF260826.1 6 20061114 115425 Cochliomyia hominivorax mitochondrion FJ905813.1 2 20090517 222863 Coelodonta antiquitatis mitochondrion AB282834.1 1 20100218 412625 Coelophrys brevicaudata mitochondrion AP002929.1 3 20100826 143328 Coelorinchus kishinouyei mitochondrion EF044213.1 2 20061114 13443 Coffea arabica chloroplast AP011558.1 1 20100627 686568 Coilia lindmani mitochondrion AP009135.1 2 20070621 365059 Coilia nasus mitochondrion AP011559.1 1 20100627 686569 Coilia reynaldi mitochondrion FJ261955.1 3 20091211 4505 Coix lacryma-jobi chloroplast AB114446.1 3 20080926 52435 Coleonyx variegatus mitochondrion HM447239.1 1 20100708 240159 Collichthys lucidus mitochondrion JN857362.1 1 20111026 240159 Collichthys lucidus mitochondrion HM219223.1 2 20110310 240160 Collichthys niveatus mitochondrion JN678726.1 1 20111018 240160 Collichthys niveatus mitochondrion, Pacific Ocean:Northwestern Pacific Ocean, Haizhou Bay AY863427.1 3 20050527 33548 Colobus guereza mitochondrion JN105689.1 2 20120120 4460 Colocasia esculenta isolate GP chloroplast JN105690.1 2 20120120 4460 Colocasia esculenta isolate RR chloroplast JN122000.1 1 20110816 1075158 Coloceras sp. SLC-2011 mitochondrion AP010863.1 2 20101229 391219 Coloconger cadenati mitochondrion AP002932.1 2 20050416 129043 Cololabis saira mitochondrion AP011909.1 2 20110708 500393 Colomesus asellus mitochondrion AP011910.1 2 20110708 679668 Colomesus psittacus mitochondrion DQ643833.1 2 20060616 242718 Colpophyllia natans mitochondrion GU908131.1 2 20101203 8932 Columba livia mitochondrion AB038381.2 4 20101229 7943 Conger myriaster mitochondrion AP009580.1 1 20091130 492036 Conocara macropterum mitochondrion AP009581.1 1 20091130 492037 Conocara murrayi mitochondrion HQ711931.1 1 20120102 578476 Conocephalus maculatus mitochondrion FJ905109.1 2 20101231 646521 Contracaecum rudolphii B Bullini et al., 1986 mitochondrion EU827198.1 1 20090918 289022 Conus borgesi mitochondrion DQ862058.1 1 20070114 6494 Conus textile mitochondrion AY265417.1 4 20050416 27828 Cooperia oncophora mitochondrion EU427334.1 1 20081224 498928 Coptosoma bifaria mitochondrion AB626147.1 1 20110622 36987 Coptotermes formosanus mitochondrion, country: Japan:Okinawa, Iriomote Island AB626146.1 1 20110622 36987 Coptotermes formosanus mitochondrion, country: Japan:Okinawa, Miyako Island AB626145.1 1 20110622 36987 Coptotermes formosanus mitochondrion, country: Japan:Okinawa, Okinawa Island AB595190.1 1 20110412 909848 Corallium konojoi mitochondrion HQ897685.1 1 20120131 139036 Corcyra cephalonica mitochondrion EU371503.2 2 20080514 475271 Beauveria bassiana mitochondrion EU100742.1 2 20100619 176275 Cordyceps bassiana mitochondrion EU100743.1 2 20100619 118266 Cordyceps brongniartii mitochondrion DQ102703.1 2 20061114 334015 Coreana raphaelis mitochondrion AB034824.1 3 20050414 59291 Coregonus lavaretus mitochondrion DQ347951.2 3 20080705 354116 Coreoleuciscus splendidus mitochondrion JN831357.1 1 20111109 354116 Coreoleuciscus splendidus strain Geum River JN831358.1 1 20111109 354116 Coreoleuciscus splendidus strain Seomjin River AP005990.1 1 20070920 215345 Coreoperca kawamebari mitochondrion AP011589.1 1 20120106 689651 Corica laciniata mitochondrion HQ269363.1 2 20110128 121492 Corticium candelabrum mitochondrion, isolate DL049 Y18522.2 7 20050505 75140 Corvus frugilegus mitochondrion FJ171323.1 2 20090327 559164 Corydalus cornutus mitochondrion AB054128.1 6 20090215 149983 Corydoras rabauti mitochondrion HQ207704.1 2 20110123 4312 Corynocarpus laevigata chloroplast FJ154897.1 1 20100627 217443 Cotesia vestalis mitochondrion EU332751.1 1 20101231 290628 Cottus hangiongensis mitochondrion EU332750.1 1 20101231 182643 Cottus poecilopus mitochondrion AP004442.1 2 20050416 137881 Cottus reinii mitochondrion AP010823.1 2 20100421 548806 Coturnicops exquisitus mitochondrion AB073301.1 4 20070818 46218 Coturnix chinensis mitochondrion AP003195.2 3 20050416 93934 Coturnix japonica mitochondrion JN861747.1 1 20111113 209689 Cramptonomyia spenceri mitochondrion AY898626.1 1 20060718 175798 Cranoglanis bouderius mitochondrion EU672832.1 25 20100603 558553 Crassostrea angulata isolate Cangtaiwh-9 mitochondrion FJ841965.1 2 20100908 558553 Crassostrea angulata mitochondrion EU672835.1 25 20100603 94323 Crassostrea ariakensis AF177226.1 2 20061114 29159 Crassostrea gigas mitochondrion EU672834.1 1 20090304 298176 Crassostrea hongkongensis isolate Hainan big#1 mitochondrion EU266073.1 2 20081105 298176 Crassostrea hongkongensis mitochondrion FJ841967.1 2 20100908 167541 Crassostrea iredalei mitochondrion HM015198.1 1 20110309 121615 Crassostrea nippona mitochondrion EU672833.1 25 20100603 94324 Crassostrea sikamea mitochondrion AY905542.2 4 20080326 6565 Crassostrea virginica mitochondrion AP011986.1 1 20110629 909854 Crenuchus spilurus mitochondrial DNA DQ390542.2 4 20070723 10029 Cricetulus griseus mitochondrion AF467886.1 4 20061114 184539 Crioceris duodecimpunctata mitochondrion FJ986302.1 3 20090603 165446 Cristaria plicata mitochondrion GU944476.1 1 20120102 165446 Cristaria plicata mitochondrion AY769264.1 2 20050416 36802 Crocidura russula mitochondrion HM636894.1 2 20110621 48399 Crocodylus acutus mitochondrion HM636895.1 2 20110621 184240 Crocodylus intermedius mitochondrion HM488008.2 3 20110427 184234 Crocodylus johnsoni mitochondrion GU144287.1 1 20101028 184236 Crocodylus mindorensis mitochondrion HQ585889.1 2 20110427 184237 Crocodylus moreletii mitochondrion AJ810452.1 5 20080722 8501 Crocodylus niloticus mitochondrion HM636896.1 2 20110621 8503 Crocodylus novaeguineae mitochondrion GU144286.1 1 20101028 184238 Crocodylus palustris mitochondrion HM488007.1 3 20110427 184238 Crocodylus palustris mitochondrion (India) AJ810453.1 5 20080722 8502 Crocodylus porosus mitochondrion DQ353946.1 2 20080614 68455 Crocodylus siamensis mitochondrion AP011560.1 1 20110111 299317 Cromeria nilotica mitochondrial DNA JF937589.1 1 20110720 9096 Crossoptilon auritum mitochondrion HM641837.1 1 20100811 35024 Crotalus horridus mitochondrion AP009372.1 1 20070414 78192 Crucihimalaya wallichii chloroplast AF218210.1 4 20061114 5116 Cryphonectria parasitica mitochondrial plasmid pleC9 Y12637.1 5 19990211 5116 Cryphonectria parasitica mitochondrial plasmid Y12637 AY101381.1 2 20050416 178876 Cryptococcus neoformans var. grubii strain H99 mitochondrion AP009377.1 4 20081126 3369 Cryptomeria japonica chloroplast GQ358203.1 2 20100723 2898 Cryptomonas paramecium plastid AB282850.1 1 20100218 412659 Cryptopsaras couesii mitochondrion EU016194.1 1 20080331 187623 Cryptopygus antarcticus mitochondrion AP011987.1 1 20110629 303997 Ctenolucius hujeta mitochondrial DNA HM544131.1 1 20110830 61871 Ctenomys leucodon mitochondrion, voucher MSB:Mamm:59654 HM544129.1 1 20110830 43321 Ctenomys sociabilis mitochondrion, voucher EAL545 HQ891005.1 1 20110213 7959 Ctenopharyngodon idella mitochondrion EU391390.1 3 20081224 7959 Ctenopharyngodon idella mitochondrion (Yangtze River) JN700942.1 1 20111211 1104540 Cubaia aphrodite mitochondrion AP006038.1 1 20090822 215401 Cubiceps pauciradiatus mitochondrion GU176341.1 1 20100713 186067 Cucujus clavipes mitochondrion GQ332426.1 2 20111019 657293 Cucullanus robustus mitochondrion AY182376.1 3 20061114 28833 Cucumaria miniata mitochondrion JF412791.1 2 20111014 412675 Cucumis melo subsp. melo chloroplast AJ970307.1 3 20090310 3659 Cucumis sativus chloroplast DQ119058.1 3 20060803 3659 Cucumis sativus cultivar Baekmibaekdadagi plastid DQ865975.1 1 20070529 3659 Cucumis sativus cultivar GY14 chloroplast DQ865976.1 1 20070529 3659 Cucumis sativus strain CHIPPER chloroplast GQ856148.1 4 20101203 3663 Cucurbita pepo mitochondrion AB445125.1 2 20090113 240156 Culaea inconstans mitochondrion HQ724615.1 2 20110928 38569 Culex pipiens pipiens from Greece mitochondrion HQ724614.1 2 20110928 38569 Culex pipiens pipiens from Tunisia mitochondrion HQ724616.1 2 20110928 38569 Culex pipiens pipiens from Turkey mitochondrion HQ724617.1 2 20110928 7176 Culex quinquefasciatus from USA mitochondrion GU188856.1 2 20110825 7176 Culex quinquefasciatus mitochondrion AB361004.1 3 20090510 198116 Culicoides arakawae mitochondrion GU190362.1 1 20091208 194366 Culter alburnus mitochondrion GU063864.1 3 20091111 68730 Cuon alpinus mitochondrion FJ763736.1 1 20100301 74909 Cuora amboinensis mitochondrion AY874540.1 1 20070601 72008 Cuora aurocapitata mitochondrion EU708434.1 1 20090203 204965 Cuora flavomarginata mitochondrion EU809939.1 1 20100503 204968 Cuora galbinifrons mitochondrion GQ889364.1 1 20100730 176193 Cuora pani mitochondrion AP011988.1 1 20110629 909830 Curimatopsis evelynae mitochondrial DNA EU189132.1 2 20071223 476139 Cuscuta exaltata chloroplast AM711639.1 1 20070828 35886 Cuscuta gronovii complete chloroplast EU189133.1 2 20071223 437280 Cuscuta obtusiflora chloroplast AM711640.1 1 20070828 4129 Cuscuta reflexa complete chloroplast D89861.1 4 20090426 45157 Cyanidioschyzon merolae mitochondrion AB002583.1 5 20071220 45157 Cyanidioschyzon merolae strain 10D chloroplast AY286123.1 1 20040430 45157 Cyanidioschyzon merolae strain DBV201 chloroplast AF022186.2 8 20050415 2771 Cyanidium caldarium chloroplast U30821.1 5 20050417 2762 Cyanophora paradoxa chloroplast HQ849544.1 1 20110208 2762 Cyanophora paradoxa, strain CCMP 329, mitochondrion JN108020.1 1 20110714 193059 Cyanopica cyanus mitochondrion HQ896033.1 1 20110313 125286 Cyanoptila cyanomelana mitochondrion AP009339.1 1 20070628 54799 Cycas taitungensis chloroplast AP009381.1 2 20080202 54799 Cycas taitungensis mitochondrion EF067858.1 1 20080531 260631 Cyclemys atripons mitochondrion AB126082.1 2 20090215 154813 Cycleptus elongatus mitochondrion DQ866052.1 2 20070801 395993 Cydistomyia duplonotata mitochondrion AP010870.1 2 20101229 556252 Cyema atrum mitochondrion FJ379295.1 2 20100717 8868 Cygnus atratus mitochondrion DQ083161.1 2 20060208 110926 Cygnus columbianus mitochondrion GQ888712.1 1 20100213 53338 Cylicocyclus insignis mitochondrion AB179619.1 4 20080924 186578 Cylindrophis ruffus mitochondrion EU827200.1 1 20090918 543398 Cymatium parthenopeum mitochondrion AP009128.1 3 20081119 50794 Cymatogaster aggregata mitochondrion EU827199.1 1 20090918 543401 Cymbium olla mitochondrion GQ380410.1 1 20101230 341728 Cynoglossus abbreviatus mitochondrion EU366230.1 1 20090610 244447 Cynoglossus semilaevis mitochondrion AP010853.1 2 20101229 391196 Cynoponticus ferox mitochondrion EU877949.1 2 20081031 546486 Cyphon sp. BT0012 mitochondrion AB070206.1 2 20090215 28791 Cyprinella lutrensis mitochondrion DQ536422.1 2 20060719 13477 Cyprinella spiloptera mitochondrion EF442803.2 2 20070330 28742 Cyprinodon rubrofluviatilis mitochondrion X61010.1 90 20050418 7962 Cyprinus carpio mitochondrion AB182653.1 4 20080705 283373 Cypselurus hiraii mitochondrion AM181028.1 3 20070821 39293 Cystophora cristata mitochondrion EU913478.1 1 20081019 8707 Daboia russellii mitochondrion AP002947.1 2 20050416 143342 Dactyloptena peterseni mitochondrion AP004440.1 2 20050416 181453 Dactyloptena tiltoni mitochondrion AP004102.1 4 20061114 75939 Dallia pectoralis mitochondrion FJ207530.1 1 20090428 9931 Damaliscus pygargus mitochondrion GQ344500.1 1 20111221 658857 Damaster mirabilissimus mirabilissimus mitochondrion FJ204233.1 3 20090619 317680 Damon diadema mitochondrion AP002936.1 2 20050416 143336 Danacetichthys galathenus mitochondrion AP011235.1 1 20110513 127599 Danio dangila mitochondrion AC024175.3 9 20050414 7955 Danio rerio mitochondrion AP011424.1 1 20110513 487619 Danionella mirifica mitochondrion, except for D-loop AF117817.1 4 20050415 6669 Daphnia pulex mitochondrion DQ340828.1 1 20060216 6669 Daphnia pulex strain A1 mitochondrion Y11832.1 10 20050418 9361 Dasypus novemcinctus mitochondrion AY795973.1 2 20060302 9280 Dasyurus hallucatus mitochondrion AM905039.1 2 20080818 31869 Daubentonia madagascariensis mitochondrion DQ898156.1 3 20061114 4039 Daucus carota chloroplast EU591677.1 1 20090430 318828 Davidius lunatus mitochondrion DQ508940.1 3 20080822 4959 Debaryomyces hansenii mitochondrion AP011546.1 1 20100205 366427 Decipisagitta decipiens mitochondrion DQ343647.1 2 20081229 36307 Deinagkistrodon acutus mitochondrion GQ354526.1 3 20100715 5007 Dekkera bruxellensis mitochondrion EU557094.1 1 20090203 103584 Delphinus capensis mitochondrion FJ970916.1 1 20090810 257763 Dendrocalamus latiflorus chloroplast FJ379296.1 2 20100717 60182 Dendrocygna javanica mitochondrion AM904727.1 2 20080818 42325 Dendrohyrax dorsalis mitochondrion GU047877.1 4 20120102 151770 Dendronephthya castanea mitochondrion FJ372991.1 1 20091130 151771 Dendronephthya gigantea mitochondrion HQ694725.1 2 20120102 944597 Dendronephthya mollis mitochondrion HQ694726.1 2 20120102 89595 Dendronephthya putteri mitochondrion GU047878.1 4 20120102 151773 Dendronephthya suensoni mitochondrion HM174252.1 1 20101004 169306 Dendropoma gregarium mitochondrion HM174253.1 1 20101004 169307 Dendropoma maximum mitochondrion AP007276.1 1 20060224 299321 Denticeps clupeoides mitochondrion EU137664.1 1 20081230 441219 Deracantha onos mitochondrion AP010851.1 2 20101229 391192 Derichthys serpentinus mitochondrion AY463155.1 3 20061114 115427 Dermatobia hominis mitochondrion, GQ465336.1 2 20100109 6954 Dermatophagoides farinae mitochondrion EU884425.1 1 20090410 6956 Dermatophagoides pteronyssinus mitochondrion GQ469891.1 1 20101223 6956 Dermatophagoides pteronyssinus mitochondrion GQ244467.1 1 20090922 118251 Dermophis mexicanus mitochondrion AY500367.1 3 20061114 62313 Desmarestia viridis mitochondrion AY728227.1 2 20040922 52100 Desmognathus fuscus mitochondrion AY728225.1 2 20040922 52108 Desmognathus wrighti mitochondrion EU871947.1 1 20090521 208481 Diadegma semiclausum mitochondrion AP009167.1 3 20110411 556049 Diagramma picta mitochondrion AP002923.1 2 20050416 143323 Diaphus splendidus mitochondrion FJ240227.1 2 20110412 40085 Diatraea saccharalis mitochondrion GQ368657.1 1 20090910 294758 Dicamptodon aterrimus mitochondrion AB282842.1 1 20100218 412635 Diceratias pileatus mitochondrion FJ905816.1 2 20090517 89632 Dicerorhinus sumatrensis mitochondrion FJ905814.1 2 20090517 9805 Diceros bicornis mitochondrion DQ336395.4 4 20080627 361072 Dictyostelium citrinum mitochondrion AB000109.1 14 20090515 44689 Dictyostelium discoideum mitochondrion EU275727.1 2 20080627 261658 Dictyostelium fasciculatum mitochondrion AY500368.1 3 20061114 2876 Dictyota dichotoma mitochondrion Z29573.1 20 20061114 9267 Didelphis virginiana mitochondrion AB008539.1 12 20080924 56549 Dinodon semicarinatus mitochondrion AY016013.1 3 20050416 147464 Dinornis giganteus mitochondrion AP009177.1 2 20070920 229062 Diodon holocanthus mitochondrion EF380353.1 1 20070624 145284 Dioscorea elephantipes chloroplast DQ985706.1 4 20070420 60516 Diphyllobothrium latum mitochondrion AB268585.1 2 20090113 64604 Diphyllobothrium nihonkaiense mitochondrion AP004408.1 2 20050416 181406 Diplacanthopoma brachysoma mitochondrion GU949545.1 1 20100401 747040 Diploid Megalobrama amblycephala x Xenocypris davidi mitochondrion HQ651067.1 1 20110621 756765 Diploid Xenocypris davidi x Megalobrama amblycephala mitochondrion AY605474.1 2 20061114 94420 Diplometopon zarudnyi mitochondrion AP012011.1 1 20110629 390452 Diplomystes nahuelbutaensis mitochondrion AB034825.1 3 20050414 91975 Diplophos taenia mitochondrion FN313539.1 1 20091127 168635 Diplosoma listerianum mitochondrion AJ537512.1 4 20061114 6287 Dirofilaria immitis mitochondrion AY585339.1 3 20061114 97956 Discoglossus galganoi mitochondrion DQ643965.1 4 20061114 386609 Discosoma sp. CASIZ 168915 mitochondrion DQ643966.1 4 20061114 386610 Discosoma sp. CASIZ 168916 mitochondrion AB070242.1 1 20110624 169289 Distichodus sexfasciatus mitochondrion DQ026431.1 1 20080906 70541 Distoechodon tumirostris mitochondrion AB241052.1 2 20060816 38614 Distoechurus pennatus mitochondrion FJ859906.1 3 20091027 560959 Ditaxis biseriata mitochondrion AP009129.1 3 20081119 83878 Ditrema temminckii mitochondrion AP009181.1 2 20070920 223795 Doederleinia berycoides mitochondrion AF366350.1 4 20061114 159310 Dogania subplana mitochondrion AB176541.1 6 20060227 76841 Doliolum nationalis mitochondrion DQ536426.1 2 20060719 336262 Dorosoma cepedianum mitochondrion AP009136.1 1 20070612 224713 Dorosoma petenense mitochondrion GQ225110.1 1 20090618 1051066 Doryteuthis opalescens mitochondrion EU068697.1 5 20101130 346249 Dosidicus gigas mitochondrion AP009373.1 1 20070414 171822 Draba nemorosa chloroplast JN555591.1 1 20110919 318479 Dracunculus medinensis mitochondrion DQ887676.1 2 20061114 224735 Drimys granadensis chloroplast AF338711.1 4 20050527 8790 Dromaius novaehollandiae mitochondrion AJ508402.2 6 20061114 33562 Dromiciops gliroides partial mitochondrion BK006336.1 1 20080620 7217 Drosophila ananassae mitochondrion BK006335.1 1 20080620 7220 Drosophila erecta mitochondrion BK006341.1 1 20080620 7222 Drosophila grimshawi mitochondrion FJ447340.1 4 20100907 47316 Drosophila littoralis mitochondrion AF200830.1 4 20050415 7226 Drosophila mauritiana mitochondrion U37541.1 11 20080813 7227 Drosophila melanogaster mitochondrion BK006339.1 1 20080620 7230 Drosophila mojavensis mitochondrion BK006337.1 1 20091001 7234 Drosophila persimilis mitochondrion FJ899745.1 1 20100111 7237 Drosophila pseudoobscura mitochondrion AF200832.1 4 20050415 7238 Drosophila sechellia type line mitochondrion AF200833.1 4 20050415 7240 Drosophila simulans mitochondrion BK006340.1 1 20080620 7244 Drosophila virilis mitochondrion BK006338.1 1 20080620 7260 Drosophila willistoni mitochondrion X03240.1 54 20081023 7245 Drosophila yakuba mitochondrion DQ780879.1 4 20061220 51359 Dryocopus pileatus mitochondrion AB618487.1 1 20111211 6161 Dugesia japonica mitochondrion AJ421723.1 4 20061114 29137 Dugong dugon mitochondrion GQ250046.1 4 20100615 3046 Dunaliella salina chloroplast GQ250045.1 4 20100615 3046 Dunaliella salina mitochondrion GU591327.1 1 20100609 400756 Durinskia baltica chloroplast EU427335.1 1 20081224 191328 Dysdercus cingulatus mitochondrion FN562581.1 2 20100602 39298 Echinocardium cordatum mitochondrion AB208063.1 3 20090118 519352 Echinococcus canadensis mitochondrion AF346403.1 3 20080517 519353 Echinococcus equinus mitochondrion AF297617.1 4 20051129 6210 Echinococcus granulosus mitochondrion AB018440.2 6 20070915 6211 Echinococcus multilocularis mitochondrion AB208545.1 2 20090220 6212 Echinococcus oligarthrus mitochondrion AB235846.1 3 20090118 446560 Echinococcus ortleppi mitochondrion AB208064.1 2 20081203 260967 Echinococcus shiquicus mitochondrion AB208546.1 1 20070414 6213 Echinococcus vogeli mitochondrion HQ694727.1 2 20120102 986334 Echinogorgia complexa mitochondrion AJ400734.2 4 20061114 9371 Echinops telfairi mitochondrion AF348079.1 2 20050415 162630 Echinosorex gymnura mitochondrion AY795975.1 2 20060302 164528 Echymipera rufescens australis mitochondrion FP102296.1 2 20091123 2880 Ectocarpus siliculosus chloroplast EU237480.1 2 20090113 458493 Ectyoplasia ferox mitochondrion FN557213.1 1 20101021 685443 Eel Virus European X complete genome, viral cRNA, isolate 153311 EU072995.1 1 20070807 458089 Egretta eulophotes mitochondrion AP011588.1 1 20120106 689649 Ehirava fluviatilis mitochondrion AB054131.1 7 20090215 480914 Eigenmannia sp. CBM-ZF-10620 mitochondrion HQ702479.1 1 20110531 5801 Eimeria acervulina mitochondrion HQ702480.1 1 20110531 51314 Eimeria brunetti mitochondrion HQ702481.1 1 20110531 5804 Eimeria maxima mitochondrion HQ702482.1 1 20110531 51315 Eimeria necatrix mitochondrion HQ702483.1 1 20110531 51316 Eimeria praecox mitochondrion AY217738.1 6 20100723 5802 Eimeria tenella chloroplast HQ702484.1 1 20110531 5802 Eimeria tenella mitochondrion GQ181130.1 1 20090603 648042 Elaphe poryphyracea mitochondrion DQ873526.1 2 20081112 109298 Elaphodus cephalophus mitochondrion AP011978.1 1 20110629 8005 Electrophorus electricus mitochondrial DNA AP004455.1 2 20050416 86232 Eleotris acanthopoma mitochondrion AB096867.1 3 20050414 213657 Elephantulus sp. VB001 mitochondrion DQ316068.1 1 20060208 9783 Elephas maximus mitochondrion JN637765.1 2 20111214 82096 Eleutherococcus senticosus chloroplast GU323362.1 1 20100627 488323 Elimaea cheni mitochondrion GU945502.1 2 20100915 241046 Ellipes minuta mitochondrion AB051070.1 6 20101229 54905 Elops hawaiensis mitochondrion AP004807.1 4 20101229 7928 Elops saurus mitochondrion EU599581.1 3 20081229 188477 Elysia chlorotica mitochondrion HQ896034.1 1 20110313 504295 Emberiza chrysophrys mitochondrion HQ896035.1 1 20110313 267980 Emberiza tristrami mitochondrion AY016015.1 3 20050416 147466 Emeus crassus mitochondrion AY342361.1 4 20050416 2903 Emiliania huxleyi mitochondrion AY741371.1 1 20050721 2903 Emiliania huxleyi strain CCMP 373 chloroplast AP004446.1 2 20050416 181464 Emmelichthys struhsakeri mitochondrion AP009137.1 1 20070612 184585 Engraulis encrasicolus mitochondrion AB040676.1 6 20101229 42892 Engraulis japonicus mitochondrial DNA AB291077.1 2 20071011 34882 Enhydra lutris mitochondrion DQ343650.1 2 20081229 46265 Enhydris plumbea mitochondrion FJ456949.1 1 20090618 575841 Enithares tibialis mitochondrion AP006008.1 1 20090826 215367 Enoplosus armatus mitochondrion AY728216.1 2 20040922 57550 Ensatina eschscholtzii mitochondrion EU281143.1 2 20081229 51028 Enterobius vermicularis mitochondrion AB477459.1 2 20110114 590984 Entoria okinawaensis mitochondrion FJ790313.1 2 20100315 622658 Eophreatoicus sp. 14 FK-2009 mitochondrion FJ483847.1 1 20091130 577681 Eothenomys chinensis mitochondrion AP010819.1 3 20110930 173280 Ephedra equisetina chloroplast EU591678.1 1 20090430 515277 Ephemera orientalis mitochondrion EU237481.1 2 20080221 6052 Ephydatia muelleri mitochondrion AY916130.1 3 20061114 34391 Epidermophyton floccosum mitochondrion M81884.1 16 20081019 4177 Epifagus virginiana chloroplast AB110093.1 3 20061114 231028 Epigonichthys maldivensis mitochondrion EU043377.1 2 20091019 215347 Epinephelus akaara mitochondrion FJ594964.1 1 20091231 323802 Epinephelus bruneus mitochondrion EU043376.1 2 20091019 94232 Epinephelus coioides mitochondrion FJ472837.1 1 20081229 310571 Epinephelus lanceolatus mitochondrion HQ660062.1 1 20110308 310571 Epinephelus lanceolatus mitochondrion, specimen voucher EL001 FJ594966.1 1 20091231 232417 Epinephelus septemfasciatus mitochondrion DQ666064.1 3 20071101 172520 Epiperipatus biolleyi mitochondrion HM600781.1 1 20110701 172520 Epiperipatus biolleyi mitochondrion AF348081.1 3 20050415 150090 Episoriculus fumidus mitochondrion AJ278504.1 2 20050415 7764 Eptatretus burgeri mitochondrion GU191334.1 2 20101216 3258 Equisetum arvense chloroplast X97337.1 8 20050418 9793 Equus asinus mitochondrion AP012271.1 1 20110805 73336 Equus asinus somalicus mitochondrial DNA HQ439446.1 1 20111101 9796 Equus caballus breed Appaloosa mitochondrion HQ439450.1 1 20111101 9796 Equus caballus breed Ardennais mitochondrion HQ439453.1 1 20111101 9796 Equus caballus breed Barb mitochondrion HQ439487.1 1 20111101 9796 Equus caballus breed Black Forest mitochondrion HQ439454.1 1 20111101 9796 Equus caballus breed Camargue mitochondrion HQ439455.1 1 20111101 9796 Equus caballus breed Clydesdale mitochondrion HQ439461.1 1 20111101 9796 Equus caballus breed German Riding Pony mitochondrion HQ439456.1 1 20111101 9796 Equus caballus breed German Sport Horse mitochondrion HQ439464.1 1 20111101 9796 Equus caballus breed Haflinger mitochondrion HQ439457.1 1 20111101 9796 Equus caballus breed Hanoverian mitochondrion HQ439458.1 1 20111101 9796 Equus caballus breed Holstein mitochondrion HQ439494.1 1 20111101 9796 Equus caballus breed Hungarian Coldblood mitochondrion HQ439468.1 1 20111101 9796 Equus caballus breed Kabardin mitochondrion HQ439473.1 1 20111101 9796 Equus caballus breed Konik mitochondrion HQ439476.1 1 20111101 9796 Equus caballus breed Kustanai mitochondrion HQ439477.1 1 20111101 9796 Equus caballus breed Lewitzer mitochondrion HQ439480.1 1 20111101 9796 Equus caballus breed Noriker mitochondrion HQ439463.1 1 20111101 9796 Equus caballus breed Norwegian Fjord mitochondrion HQ439459.1 1 20111101 9796 Equus caballus breed Oldenburg mitochondrion HQ439481.1 1 20111101 9796 Equus caballus breed Orlov Trotter mitochondrion HQ439482.1 1 20111101 9796 Equus caballus breed Paint Horse mitochondrion HQ439483.1 1 20111101 9796 Equus caballus breed Percheron mitochondrion HQ439486.1 1 20111101 9796 Equus caballus breed Russian Riding Horse mitochondrion HQ439489.1 1 20111101 9796 Equus caballus breed Shetland mitochondrion HQ439490.1 1 20111101 9796 Equus caballus breed Shire mitochondrion HQ439492.1 1 20111101 9796 Equus caballus breed Spotted horse mitochondrion HQ439493.1 1 20111101 9796 Equus caballus breed Trakehner mitochondrion HQ439495.1 1 20111101 9796 Equus caballus breed Viatka mitochondrion HQ439500.1 1 20111101 9796 Equus caballus breed Vladimir Heavy Draught mitochondrion HQ439460.1 1 20111101 9796 Equus caballus breed Westphalian mitochondrion HQ439467.1 1 20111101 9796 Equus caballus breed Yakut mitochondrion HQ439441.1 1 20111101 9796 Equus caballus isolate 1 breed Akhal-Teke mitochondrion HQ439443.1 1 20111101 9796 Equus caballus isolate 1 breed Altai mitochondrion HQ439451.1 1 20111101 9796 Equus caballus isolate 1 breed Bashkir Curly mitochondrion HQ439465.1 1 20111101 9796 Equus caballus isolate 1 breed Icelandic horse mitochondrion HQ439469.1 1 20111101 9796 Equus caballus isolate 1 breed Kinsky horse mitochondrion HQ439471.1 1 20111101 9796 Equus caballus isolate 1 breed Kladruber mitochondrion HQ439474.1 1 20111101 9796 Equus caballus isolate 1 breed Kuznet mitochondrion HQ439442.1 1 20111101 9796 Equus caballus isolate 2 breed Akhal-Teke mitochondrion HQ439444.1 1 20111101 9796 Equus caballus isolate 2 breed Altai mitochondrion HQ439452.1 1 20111101 9796 Equus caballus isolate 2 breed Bashkir Curly mitochondrion HQ439466.1 1 20111101 9796 Equus caballus isolate 2 breed Icelandic horse mitochondrion HQ439470.1 1 20111101 9796 Equus caballus isolate 2 breed Kinsky horse mitochondrion HQ439472.1 1 20111101 9796 Equus caballus isolate 2 breed Kladruber mitochondrion HQ439475.1 1 20111101 9796 Equus caballus isolate 2 breed Kuznet mitochondrion HQ439497.1 1 20111101 9796 Equus caballus isolate A breed Welsh Pony mitochondrion HQ439445.1 1 20111101 9796 Equus caballus isolate alt breed Kladruber mitochondrion HQ439498.1 1 20111101 9796 Equus caballus isolate B1 breed Welsh Pony mitochondrion HQ439499.1 1 20111101 9796 Equus caballus isolate B2 breed Welsh Pony mitochondrion HQ439496.1 1 20111101 9796 Equus caballus isolate D breed Welsh Pony mitochondrion HQ439485.1 1 20111101 9796 Equus caballus isolate rg breed Rhineland Heavy Draft mitochondrion HQ439447.1 1 20111101 9796 Equus caballus isolate rus breed Arab mitochondrion HQ439491.1 1 20111101 9796 Equus caballus isolate sg breed Rhineland Heavy Draft mitochondrion HQ439488.1 1 20111101 9796 Equus caballus isolate shagya breed Arab mitochondrion HQ439448.1 1 20111101 9796 Equus caballus isolate syr1 breed Arab mitochondrion HQ439449.1 1 20111101 9796 Equus caballus isolate syr2 breed Arab mitochondrion HQ439478.1 1 20111101 9796 Equus caballus isolate wild1 breed Liebenthaler mitochondrion HQ439479.1 1 20111101 9796 Equus caballus isolate wild2 breed Liebenthaler mitochondrion X79547.1 11 20050418 9796 Equus caballus mitochondrion JN398393.1 1 20120202 9796 Equus caballus mitochondrion, isolate 17_AkT11 JN398397.1 1 20120202 9796 Equus caballus mitochondrion, isolate 21_Mrm13 JN398398.1 1 20120202 9796 Equus caballus mitochondrion, isolate 22_NoF01 JN398411.1 1 20120202 9796 Equus caballus mitochondrion, isolate 36_Gia01 JN398414.1 1 20120202 9796 Equus caballus mitochondrion, isolate 39_Irn11 JN398415.1 1 20120202 9796 Equus caballus mitochondrion, isolate 40_Irn10 JN398420.1 1 20120202 9796 Equus caballus mitochondrion, isolate 45_Bel01 JN398422.1 1 20120202 9796 Equus caballus mitochondrion, isolate 47_AkT09 JN398426.1 1 20120202 9796 Equus caballus mitochondrion, isolate 51_Mrm10 JN398447.1 1 20120202 9796 Equus caballus mitochondrion, isolate 72_CsP03 JN398377.2 1 20120202 9796 Equus caballus mitochondrion, isolate 1_ChP01 JN398378.1 1 20120202 9796 Equus caballus mitochondrion, isolate 2_CsP01 JN398379.1 1 20120202 9796 Equus caballus mitochondrion, isolate 3_Mrm12 JN398380.1 1 20120202 9796 Equus caballus mitochondrion, isolate 4_Arb05 JN398382.1 1 20120202 9796 Equus caballus mitochondrion, isolate 6_Mrm07 JN398383.1 1 20120202 9796 Equus caballus mitochondrion, isolate 7_Irn14 JN398384.1 1 20120202 9796 Equus caballus mitochondrion, isolate 8_Syr02 JN398385.1 1 20120202 9796 Equus caballus mitochondrion, isolate 9_AkT10 JN398386.1 1 20120202 9796 Equus caballus mitochondrion, isolate 10_WeP01 JN398387.1 1 20120202 9796 Equus caballus mitochondrion, isolate 11_Mrm14 JN398388.1 1 20120202 9796 Equus caballus mitochondrion, isolate 12_Mrm08 JN398389.1 1 20120202 9796 Equus caballus mitochondrion, isolate 13_Syr05 JN398390.1 1 20120202 9796 Equus caballus mitochondrion, isolate 14_Ita01 JN398391.1 1 20120202 9796 Equus caballus mitochondrion, isolate 15_Syr04 JN398392.1 1 20120202 9796 Equus caballus mitochondrion, isolate 16_Arb02 JN398394.1 1 20120202 9796 Equus caballus mitochondrion, isolate 18_Syr01 JN398395.1 1 20120202 9796 Equus caballus mitochondrion, isolate 19_Irn09 JN398396.1 1 20120202 9796 Equus caballus mitochondrion, isolate 20_SfP01 JN398399.1 1 20120202 9796 Equus caballus mitochondrion, isolate 23_ILH02 JN398400.1 1 20120202 9796 Equus caballus mitochondrion, isolate 24_ILH01 JN398401.1 1 20120202 9796 Equus caballus mitochondrion, isolate 25_Mrm05 JN398404.1 1 20120202 9796 Equus caballus mitochondrion, isolate 28_AkT06 JN398405.1 1 20120202 9796 Equus caballus mitochondrion, isolate 30_Irn05 JN398406.1 1 20120202 9796 Equus caballus mitochondrion, isolate 31_Arb03 JN398407.1 1 20120202 9796 Equus caballus mitochondrion, isolate 32_Gia02 JN398408.1 1 20120202 9796 Equus caballus mitochondrion, isolate 33_Syr03 JN398409.1 1 20120202 9796 Equus caballus mitochondrion, isolate 34_Ita02 JN398410.1 1 20120202 9796 Equus caballus mitochondrion, isolate 35_AkT07 JN398412.1 1 20120202 9796 Equus caballus mitochondrion, isolate 37_Arb06 JN398413.1 1 20120202 9796 Equus caballus mitochondrion, isolate 38_Mrm06 JN398416.1 1 20120202 9796 Equus caballus mitochondrion, isolate 41_CsP04 JN398417.1 1 20120202 9796 Equus caballus mitochondrion, isolate 42_Trk01 JN398418.1 1 20120202 9796 Equus caballus mitochondrion, isolate 43_Mrm15 JN398419.1 1 20120202 9796 Equus caballus mitochondrion, isolate 44_Irn02 JN398421.1 1 20120202 9796 Equus caballus mitochondrion, isolate 46_APH01 JN398423.1 1 20120202 9796 Equus caballus mitochondrion, isolate 48_Irn01 JN398424.1 1 20120202 9796 Equus caballus mitochondrion, isolate 49_AkT08 JN398425.1 1 20120202 9796 Equus caballus mitochondrion, isolate 50_Ita03 JN398427.1 1 20120202 9796 Equus caballus mitochondrion, isolate 52_Mrm03 JN398428.1 1 20120202 9796 Equus caballus mitochondrion, isolate 53_CsP02 JN398429.1 1 20120202 9796 Equus caballus mitochondrion, isolate 54_Old01 JN398430.1 1 20120202 9796 Equus caballus mitochondrion, isolate 55_And01 JN398431.1 1 20120202 9796 Equus caballus mitochondrion, isolate 56_Sil01 JN398432.1 1 20120202 9796 Equus caballus mitochondrion, isolate 57_Mrm04 JN398433.1 1 20120202 9796 Equus caballus mitochondrion, isolate 58_Irn13 JN398434.1 1 20120202 9796 Equus caballus mitochondrion, isolate 59_Arb04 JN398436.1 1 20120202 9796 Equus caballus mitochondrion, isolate 61_CsP05 JN398437.1 1 20120202 9796 Equus caballus mitochondrion, isolate 62_Mrm01 JN398438.1 1 20120202 9796 Equus caballus mitochondrion, isolate 63_Fre01 JN398439.1 1 20120202 9796 Equus caballus mitochondrion, isolate 64_Cly01 JN398440.1 1 20120202 9796 Equus caballus mitochondrion, isolate 65_EnS01 JN398441.1 1 20120202 9796 Equus caballus mitochondrion, isolate 66_Sad01 JN398442.1 1 20120202 9796 Equus caballus mitochondrion, isolate 67_Exm01 JN398443.1 1 20120202 9796 Equus caballus mitochondrion, isolate 68_And02 JN398444.1 1 20120202 9796 Equus caballus mitochondrion, isolate 69_Irn06 JN398445.1 1 20120202 9796 Equus caballus mitochondrion, isolate 70_Irn12 JN398446.1 1 20120202 9796 Equus caballus mitochondrion, isolate 71_Irn03 JN398448.1 1 20120202 9796 Equus caballus mitochondrion, isolate 73_Arb01 JN398449.1 1 20120202 9796 Equus caballus mitochondrion, isolate 74_AkT02 JN398450.1 1 20120202 9796 Equus caballus mitochondrion, isolate 75_AkT01 JN398451.1 1 20120202 9796 Equus caballus mitochondrion, isolate 76_Irn07 JN398452.1 1 20120202 9796 Equus caballus mitochondrion, isolate 77_AkT04 JN398453.1 1 20120202 9796 Equus caballus mitochondrion, isolate 78_AkT03 JN398454.1 1 20120202 9796 Equus caballus mitochondrion, isolate 80_Mrm02 JN398456.1 1 20120202 9796 Equus caballus mitochondrion, isolate 82_Mrm09 JN398457.1 1 20120202 9796 Equus caballus mitochondrion, isolate 83_Irn04 FJ718996.1 2 20111024 9796 Equus caballus mitochondrion, isolate TN8947 FJ718998.1 2 20111024 9796 Equus caballus mitochondrion, isolate TN9106 FJ718997.1 2 20111024 9796 Equus caballus mitochondrion, isolate TN9178 HM118851.1 1 20110926 9794 Equus hemionus mitochondrion AP012268.1 1 20110805 9798 Equus przewalskii mitochondrial DNA, isolate: Anushka AP012270.1 1 20110805 9798 Equus przewalskii mitochondrial DNA, isolate: Bars AP012267.1 1 20110805 9798 Equus przewalskii mitochondrial DNA, isolate: Belina AP012269.1 1 20110805 9798 Equus przewalskii mitochondrial DNA, isolate: Bonnette HQ439484.1 1 20111101 9798 Equus przewalskii mitochondrion JN398402.1 1 20120202 9798 Equus przewalskii mitochondrion, isolate 26_Prz01 JN398403.1 1 20120202 9798 Equus przewalskii mitochondrion, isolate 27_Prz02 JQ086345.1 1 20120118 118841 Eremias argus voucher LEGO-F415 mitochondrion EF490071.1 1 20081224 326972 Eremias brenchleyi mitochondrion AM904729.1 2 20080818 481707 Eremitalpa granti mitochondrion EU520642.1 1 20080401 507470 Eremobates cf. palpisetulosus SEM-2008 mitochondrion AE016821.1 6 20100309 284811 Ashbya gossypii ATCC 10895 mitochondrion DQ533485.1 1 20081101 27787 Eretmochelys imbricata mitochondrion AM181027.1 3 20070821 39304 Erignathus barbatus mitochondrion AP011228.1 1 20090731 154815 Erimyzon oblongus mitochondrion X88898.2 16 20020611 9365 Erinaceus europaeus mitochondrion FJ455506.1 1 20081229 168195 Eriocheir hepuensis mitochondrion FJ455505.1 1 20081229 95603 Eriocheir japonica mitochondrion AY274302.1 1 20050419 95602 Eriocheir sinensis mitochondrion FJ685653.1 1 20090528 364026 Eriogyna pyretorum mitochondrion HQ713469.1 1 20110131 337360 Erodium carvifolium chloroplast HM125536.1 2 20110210 28960 Erodium texanum plastid AY442348.1 3 20050416 27687 Erpetoichthys calabaricus mitochondrion HM143925.1 1 20110331 27687 Erpetoichthys calabaricus voucher NTNU LSP074 mitochondrion AJ554053.1 4 20061114 9764 Eschrichtius robustus mitochondrion AP011601.1 1 20120106 454032 Escualosa thoracata mitochondrion AB239594.1 2 20090215 353259 Esomus metallicus mitochondrion AP004103.1 5 20061114 8010 Esox lucius mitochondrion AY341348.2 4 20060719 54341 Etheostoma radiosum mitochondrion AP009138.1 1 20070612 297798 Ethmalosa fimbriata mitochondrion AP011602.1 1 20120106 691795 Ethmidium maculatum mitochondrion AP009505.1 3 20091127 50796 Etroplus maculatus mitochondrion AP009139.1 1 20070612 224716 Etrumeus teres mitochondrion HM174254.1 1 20101004 765164 Eualetes tulipa mitochondrion AP006473.1 2 20050416 160595 Eubalaena australis mitochondrion AP006474.1 2 20050416 302098 Eubalaena japonica mitochondrion AP009217.1 1 20090110 392919 Eubalichthys mosaicus mitochondrion AY780259.1 3 20060111 71271 Eucalyptus globulus subsp. globulus chloroplast HM347959.1 1 20101013 71139 Eucalyptus grandis chloroplast HM583652.1 1 20100827 868577 Euchorthippus fusigeniculatus mitochondrion AF338710.2 5 20050527 8805 Eudromia elegans mitochondrion EU410487.1 2 20090115 497866 Eudynamys taitensis mitochondrion AF362763.1 3 20061114 37083 Eudyptula minor mitochondrion X70810.2 55 20081023 3039 Euglena gracilis chloroplast AJ294725.1 5 20061114 3037 Euglena longa chloroplast AB371086.1 1 20090603 40322 Eulemur fulvus fulvus mitochondrion AB371087.1 1 20090603 27680 Eulemur fulvus mayottensis mitochondrion AB371088.1 1 20090603 30603 Eulemur macaco macaco mitochondrion AM905040.1 2 20080818 34828 Eulemur mongoz mitochondrion AJ428578.2 5 20061114 34886 Eumetopias jubatus mitochondrion GU086203.1 1 20111124 681720 Eunapius subterraneus mitochondrion HM126547.1 1 20100907 476664 Euphaea formosa mitochondrion EU587005.1 1 20111115 102976 Euphausia pacifica mitochondrion AP011544.1 2 20101102 143416 Euphlyctis hexadactylus mitochondrion JF825139.1 1 20110607 46750 Euphyllia ancora mitochondrion HQ694728.1 2 20120102 58800 Euplexaura crassa mitochondrion HQ378507.1 1 20120102 76235 Euploea mulciber mitochondrion FJ830540.1 2 20100921 367774 Eupolyphaga sinensis mitochondrion AY728217.1 2 20040922 134758 Eurycea bislineata mitochondrion AB046473.2 3 20101229 55117 Eurypharynx pelecanoides mitochondrion EU344978.1 2 20090115 188341 Eurystomus orientalis mitochondrion GU176344.1 1 20100713 694456 Euspilotus scissus mitochondrion AP010885.1 1 20090127 565079 Eutaeniophorus festivus mitochondrion AP004424.1 2 20050416 181429 Eutaeniophorus sp. 033-Miya mitochondrion AB099716.1 3 20071102 8228 Euthynnus alletteratus mitochondrion FJ593187.1 1 20090913 27486 Evania appendigaster mitochondrion AP002933.1 2 20050416 143332 Exocoetus volitans mitochondrion EF560650.1 2 20090422 392227 Exopalaemon carinicauda mitochondrion HQ322500.1 1 20101028 191189 Exorista sorbillans mitochondrion JF504707.1 1 20111206 1004790 Fabriciana nerippe mitochondrion AP010866.1 2 20101229 556245 Facciolella oxyrhyncha mitochondrion EU254477.1 2 20080606 180217 Fagopyrum esculentum subsp. ancestrale chloroplast AF090338.1 6 20050415 8954 Falco peregrinus mitochondrion DQ780880.1 4 20061220 56350 Falco sparverius mitochondrion EU196361.1 1 20080930 100819 Falco tinnunculus mitochondrion EU497054.1 1 20090602 171294 Farfantepenaeus californiensis mitochondrion AF216697.1 4 20061114 6192 Fasciola hepatica mitochondrion EU652694.1 2 20090603 111367 Fejervarya cancrivora mitochondrion AY158705.1 6 20061114 110108 Fejervarya limnocharis mitochondrion U20753.1 6 20050417 9685 Felis catus mitochondrion DQ518969.1 4 20071004 139456 Fenneropenaeus chinensis mitochondrion JF289171.1 1 20110324 103592 Feresa attenuata mitochondrion, isolate 35 JF289172.1 1 20110324 103592 Feresa attenuata mitochondrion, isolate 36 HQ872008.1 1 20120131 991131 Fergusonina taylori mitochondrion HQ337794.1 1 20110627 591214 Ferrocalamus rimosivaginus plastid FJ466687.2 5 20100713 4606 Festuca arundinacea chloroplast JN018411.1 1 20110621 369970 Ficedula zanthopygia mitochondrion AP005987.1 2 20080116 215343 Fistularia commersonii mitochondrion AP011960.1 1 20110414 880758 Fistulifera sp. JPCC DA0580 chloroplast AF049132.1 5 20050415 73431 Florometra serratissima mitochondrion GU196268.1 1 20100727 51328 Floydiella terrestris chloroplast JQ061319.1 1 20120109 478208 Flustra foliacea mitochondrion DQ157889.1 1 20060620 97271 Flustrellidra hispida mitochondrion M91245.1 10 20061114 7980 Formosania lacustris mitochondrion JF345175.1 1 20110302 101020 Fragaria vesca subsp. vesca chloroplast EU165707.1 2 20091009 472989 Francolinus pintadeanus mitochondrion EU016196.1 1 20080331 106928 Friesea grisea mitochondrion FM957154.1 2 20091130 49266 Fucus vesiculosus chloroplast AY494079.1 3 20061114 49266 Fucus vesiculosus mitochondrion FJ445394.1 2 20090130 54267 Fundulus diaphanus mitochondrion FJ445396.1 2 20090130 34779 Fundulus grandis mitochondrion FJ445402.1 2 20090130 8078 Fundulus heteroclitus isolate 01 pop-variant Maine mitochondrion FJ445400.1 2 20090130 8078 Fundulus heteroclitus mitochondrion AP006776.1 1 20081016 34782 Fundulus olivaceus mitochondrion JF825138.1 1 20110607 865886 Fungiacyathus stephanus mitochondrion AB185326.1 2 20080924 179927 Furcifer oustaleti mitochondrion AY945289.1 3 20080704 5507 Fusarium oxysporum strain F11 mitochondrion AF124844.1 5 20030703 96317 Fusarium oxysporum f. sp. matthiolae mitochondrial plasmid pFOXC3 AF124843.1 5 20030703 96318 Fusarium oxysporum f. sp. raphani mitochondrial plasmid pFOXC2 EU827197.1 1 20090918 543403 Fusiturris similis mitochondrion AB094061.1 4 20110717 1042646 Gadus chalcogrammus mitochondrion AM489718.1 2 20090223 1042646 Gadus chalcogrammus mitochondrion, tissue type muscle X99772.1 8 20050418 8049 Gadus morhua mitochondrion DQ356941.1 2 20061115 8052 Gadus ogac haplotype 002 mitochondrion AB371092.1 1 20090603 9465 Galago senegalensis mitochondrion HM106487.1 1 20110310 126305 Galaxias gollumoides mitochondrion AP004104.1 4 20061114 61620 Galaxias maculatus mitochondrion HM106488.1 1 20110310 126308 Galaxias sp. 'southern' mitochondrion AY833419.1 2 20061114 202257 Galemys pyrenaicus mitochondrion AJ428849.1 4 20061114 482537 Galeopterus variegatus mitochondrion AY510475.1 5 20061114 10390 Gallid herpesvirus 2 HQ896036.1 1 20110313 9123 Gallinula chloropus mitochondrion AP010821.1 2 20100421 547194 Gallirallus okinawae mitochondrion GU261718.1 2 20101205 9031 Gallus gallus isolate 20332 breed Lv'erwu mitochondrion GU261701.1 2 20101205 9031 Gallus gallus isolate HD38 breed Huaiyang mitochondrion GU261681.1 2 20101205 9031 Gallus gallus isolate HH131 breed Autochthonic chicken mitochondrion GU261714.1 2 20101205 9031 Gallus gallus isolate J37 breed Jiangbian mitochondrion GU261713.1 2 20101205 9031 Gallus gallus isolate J41 breed Jiangbian mitochondrion GU261700.1 2 20101205 9031 Gallus gallus isolate Man1 breed Autochthonic chicken mitochondrion GU261691.1 2 20101205 9031 Gallus gallus isolate Man2 breed Autochthonic chicken mitochondrion GU261685.1 2 20101205 9031 Gallus gallus isolate yin12 breed Autochthonic chicken mitochondrion GU261698.1 2 20101205 9031 Gallus gallus isolate yin21 breed Autochthonic chicken mitochondrion GU261680.1 2 20101205 9031 Gallus gallus isolate YP63 breed Autochthonic chicken mitochondrion GU261697.1 2 20101205 9031 Gallus gallus isolate YP66 breed Autochthonic chicken mitochondrion GU261675.1 2 20101205 9031 Gallus gallus isolate YP18793 breed Xuefeng mitochondrion GU261676.1 2 20101205 9031 Gallus gallus isolate YP18844 breed Wuding mitochondrion GU261677.1 2 20101205 9031 Gallus gallus isolate YP19263 breed Xianju mitochondrion GU261678.1 2 20101205 9031 Gallus gallus isolate YP19315 breed Gushi mitochondrion GU261689.1 2 20101205 9031 Gallus gallus isolate YP20051 breed Tengchongxue mitochondrion GU261688.1 2 20101205 9031 Gallus gallus isolate YP20069 breed Tengchongxue mitochondrion GU261705.1 2 20101205 9031 Gallus gallus isolate YP20081 breed Chigulu mitochondrion GU261684.1 2 20101205 9031 Gallus gallus isolate YP20085 breed Chigulu mitochondrion GU261719.1 2 20101205 9031 Gallus gallus isolate YP20092 breed Chigulu mitochondrion GU261715.1 2 20101205 9031 Gallus gallus isolate YP20112 breed Chigulu mitochondrion GU261717.1 2 20101205 9031 Gallus gallus isolate YP20123 breed Chigulu mitochondrion GU261699.1 2 20101205 9031 Gallus gallus isolate YP20190 breed Wenshanshandi mitochondrion GU261711.1 2 20101205 9031 Gallus gallus isolate YP20266 breed Nixi mitochondrion GU261710.1 2 20101205 9031 Gallus gallus isolate YP20307 breed Nixi mitochondrion GU261712.1 2 20101205 9031 Gallus gallus isolate YP20320 breed Lv'erwu mitochondrion GU261682.1 2 20101205 9031 Gallus gallus isolate YP20463 breed Autochthonic chicken mitochondrion GU261687.1 2 20101205 9031 Gallus gallus isolate YP20477 breed Autochthonic chicken mitochondrion GU261686.1 2 20101205 9031 Gallus gallus isolate YP20488 breed Autochthonic chicken mitochondrion GU261679.1 2 20101205 9031 Gallus gallus isolate YP20523 breed Autochthonic chicken mitochondrion GU261694.1 2 20101205 9031 Gallus gallus isolate YP20648 breed Autochthonic chicken mitochondrion GU261683.1 2 20101205 9031 Gallus gallus isolate YP20697 breed Tulufan mitochondrion AY235570.1 3 20050416 9031 Gallus gallus mitochondrion X52392.1 56 20050418 9031 Gallus gallus mitochondrion, strain white Leghorn AP003323.1 2 20050729 208525 Gallus gallus bankiva mitochondrion AP003322.1 2 20050729 208526 Gallus gallus gallus mitochondrion GU261674.1 2 20101205 405000 Gallus gallus jabouillei isolate 1210-1 breed Red jungle fowl mitochondrion GU261696.1 2 20101205 405000 Gallus gallus jabouillei isolate YP20736 breed Red jungle fowl mitochondrion GU261709.1 2 20101205 400035 Gallus gallus murghi isolate ggm1 breed Red jungle fowl mitochondrion GU261708.1 2 20101205 400035 Gallus gallus murghi isolate ggm4 breed Red jungle fowl mitochondrion GU261707.1 2 20101205 400035 Gallus gallus murghi isolate ggm7 breed Red jungle fowl mitochondrion GU261690.1 2 20101205 208524 Gallus gallus spadiceus isolate DH40 breed Red jungle fowl mitochondrion GU261693.1 2 20101205 208524 Gallus gallus spadiceus isolate DHZ1 breed Red jungle fowl mitochondrion GU261692.1 2 20101205 208524 Gallus gallus spadiceus isolate DHZ2 breed Red jungle fowl mitochondrion GU261695.1 2 20101205 208524 Gallus gallus spadiceus isolate YP19289 breed Red jungle fowl mitochondrion GU261706.1 2 20101205 208524 Gallus gallus spadiceus isolate YP19297 breed Red jungle fowl mitochondrion GU261704.1 2 20101205 208524 Gallus gallus spadiceus isolate YP19902 breed Red jungle fowl mitochondrion GU261716.1 2 20101205 208524 Gallus gallus spadiceus isolate YP19903 breed Red jungle fowl mitochondrion GU261703.1 2 20101205 208524 Gallus gallus spadiceus isolate YP19906 breed Red jungle fowl mitochondrion GU261702.1 2 20101205 208524 Gallus gallus spadiceus isolate YP19915 breed Red jungle fowl mitochondrion AP003321.1 2 20050729 208524 Gallus gallus spadiceus mitochondrion AP003325.1 1 20050721 9032 Gallus lafayetii mitochondrion AP006741.1 1 20050721 9033 Gallus sonneratii mitochondrion AP003324.1 1 20050721 9034 Gallus varius mitochondrion AB218884.1 1 20090610 43593 Gambelia wislizenii mitochondrion AP004422.1 2 20050416 33528 Gambusia affinis mitochondrion EU527333.1 1 20080904 420844 Gampsocleis gratiosa mitochondrion EU647222.1 2 20101028 585898 Gandalfus yunohana mitochondrion JN018413.1 1 20110621 56783 Garrulus glandarius mitochondrion HQ425781.1 1 20110830 13537 Gasterochisma melampus mitochondrion JN086156.1 1 20110830 13537 Gasterochisma melampus mitochondrion, voucher GM02-2319 AP002944.1 2 20050416 69293 Gasterosteus aculeatus mitochondrion AB445129.1 2 20090113 161456 Gasterosteus wheatlandi mitochondrion EU513373.1 2 20090416 267434 Gastrimargus marmoratus mitochondrion AY293618.1 4 20061114 37040 Gavia stellata mitochondrion AB079596.1 4 20080924 94835 Gavialis gangeticus mitochondrion AY456250.1 5 20081224 194526 Gegeneophis ramaswamii mitochondrion FJ230961.1 1 20090424 130583 Geisha distinctissima mitochondrion HM370130.1 1 20100621 36310 Gekko gecko LW1 mitochondrion AY282753.1 6 20061114 36310 Gekko gecko mitochondrion AP009500.1 1 20110111 89589 Genyomyrus donnyi mitochondrion AY605476.1 2 20061114 261498 Geocalamus acutus mitochondrion HM640212.1 2 20110527 8947 Geococcyx californianus mitochondrion EU410488.1 2 20090115 8947 Geococcyx californianus mitochondrion,specimen voucher LSUMZ B-8504 EU427336.1 1 20081224 300797 Geocoris pallidipennis mitochondrion AY320032.1 6 20081118 36754 Geodia neptuni mitochondrion AB187570.1 3 20071129 290333 Geothelphusa dehaani mitochondrion HM640213.1 2 20110527 869458 Geotrygon violacea mitochondrion AY954505.1 1 20090924 260995 Geotrypetes seraphini mitochondrion HM125537.1 2 20110210 326026 Geranium palmatum plastid FJ456944.1 1 20090618 575832 Gerris sp. NKMT033 mitochondrion EF622512.1 2 20080301 948311 Gibberella intermedia mitochondrial plasmid pFP1 DQ364632.1 1 20070525 5518 Gibberella zeae mitochondrion AB282852.1 1 20100218 242958 Gigantactis vanhoeffeni mitochondrion JQ041882.1 1 20120119 4874 Gigaspora margarita mitochondrion AP009315.1 2 20110302 71752 Gila conspersa mitochondrion DQ536424.1 2 20060719 71757 Gila robusta mitochondrion AP011606.1 1 20120106 521029 Gilchristella aestuaria mitochondrial DNA, almost complete FJ211845.1 1 20090701 8222 Gillichthys mirabilis mitochondrion FJ211846.1 1 20090701 79683 Gillichthys seta mitochondrion AP003424.1 1 20090224 9894 Giraffa camelopardalis mitochondrion AP011060.1 1 20090822 163149 Girella punctata mitochondrion HQ908425.1 1 20110209 38271 Glaucocystis nostochinearum strain UTEX 64 mitochondrion AJ001562.1 6 20061114 41261 Glis glis mitochondrion JF339976.1 1 20110318 38241 Globicephala macrorhynchus isolate Glomac65 mitochondrion HM060333.1 2 20100708 38241 Globicephala macrorhynchus mitochondrion JF339972.1 1 20110318 9731 Globicephala melas isolate GlomelG5 mitochondrion HM060334.1 2 20100708 9731 Globicephala melas mitochondrion AP004105.1 4 20061114 170196 Glossanodon semifasciatus mitochondrion JQ001860.1 1 20120108 764832 Glossogobius olivaceus mitochondrion EU913477.1 1 20081019 259325 Gloydius brevicaudus mitochondrion DQ317523.1 2 20061114 3847 Glycine max cultivar PI 437654 chloroplast AP008928.2 3 20101229 42645 Gnathonemus petersii mitochondrion AB218687.1 3 20090215 332172 Gnathopogon elongatus mitochondrion AP009569.1 2 20110930 33153 Gnetum parvifolium chloroplast AB239596.1 2 20090215 27704 Gobio gobio mitochondrion FJ515919.1 1 20101231 581201 Gobiobotia brevibarba mitochondrion FJ515918.1 1 20101231 564073 Gobiobotia macrocephala mitochondrion AY191995.1 2 20050416 221270 Gomphiocephalus hodgsoni mitochondrion GU294759.1 1 20100630 58560 Gomphocerippus rufus mitochondrion GQ180102.1 1 20100202 647970 Gomphocerus licenti mitochondrion HM131804.1 2 20110621 369698 Gomphocerus sibiricus tibetanus mitochondrion JN827386.1 1 20111113 1109128 Gondogeneia antarctica mitochondrion JF825141.1 1 20110607 541198 Goniopora columna mitochondrion DQ191682.1 1 20050921 85123 Gonodactylus chiragra mitochondrion AP009402.1 1 20080620 189504 Gonorynchus abbreviatus mitochondrion AB054134.1 5 20090215 149986 Gonorynchus greyi mitochondrion D38114.1 14 20090703 9593 Gorilla gorilla mitochondrion X93347.1 9 20090630 9595 Gorilla gorilla gorilla mitochondrion HQ325740.1 2 20120119 29729 Gossypium arboreum chloroplast AP009123.1 2 20061226 3634 Gossypium barbadense chloroplast HQ325741.1 2 20120119 34276 Gossypium darwinii chloroplast HQ325742.1 1 20120117 76056 Gossypium herbaceum subsp. africanum DQ345959.1 3 20061114 3635 Gossypium hirsutum cultivar coker 310 FR chloroplast HQ325743.1 2 20120119 34275 Gossypium mustelinum chloroplast HQ325744.1 2 20120119 29730 Gossypium raimondii chloroplast GU907100.1 1 20110301 34273 Gossypium thurberi chloroplast HQ325745.1 2 20120119 34277 Gossypium tomentosum chloroplast AY673996.1 3 20050416 285951 Gracilaria tenuistipitata var. liui chloroplast HQ586059.1 1 20101205 42480 Gracilariophila oryzoides mitochondrion HQ586060.1 1 20101205 408198 Gracilariopsis andersonii mitochondrion JF937590.1 1 20110720 116992 Gracula religiosa mitochondrion EU557095.1 1 20090203 83653 Grampus griseus mitochondrion HQ392511.1 2 20110807 192188 Grapholita molesta mitochondrion HQ116416.1 1 20110818 192188 Grapholita molesta mitochondrion, host is peach tree AY484748.1 1 20040818 55752 Graptacme eborea mitochondrion AP007277.1 1 20060224 299323 Grasseichthys gabonensis mitochondrion FJ769848.1 1 20100301 9117 Grus americana mitochondrion FJ769854.1 1 20100301 9116 Grus antigone mitochondrion FJ769855.1 1 20100301 40820 Grus canadensis mitochondrion FJ769843.1 1 20100301 9118 Grus carunculatus mitochondrion FJ769849.1 1 20100301 40816 Grus grus mitochondrion FJ769847.1 1 20100301 30415 Grus japonensis mitochondrion FJ769846.1 1 20100301 40819 Grus leucogeranus mitochondrion FJ769850.1 1 20100301 40818 Grus monacha mitochondrion FJ769851.1 1 20100301 40817 Grus nigricollis mitochondrion FJ769844.1 1 20100301 40825 Grus paradisea mitochondrion FJ769853.1 1 20100301 34922 Grus rubicunda mitochondrion FJ769852.1 1 20100301 9115 Grus vipio mitochondrion FJ769845.1 1 20100301 9111 Grus virgo mitochondrion AY660929.1 5 20061114 213494 Gryllotalpa orientalis mitochondrion EU938371.1 1 20080930 552513 Gryllotalpa pluvialis mitochondrion AP011603.1 1 20120106 691797 Gudusia chapra mitochondrion AF165818.4 11 20110621 55529 Guillardia theta nucleomorph chromosome 1 AJ010592.2 10 20090630 55529 Guillardia theta nucleomorph chromosome 2 AF083031.2 12 20110621 55529 Guillardia theta nucleomorph chromosome 3 AF041468.1 4 20061114 55529 Guillardia theta chloroplast EU549769.1 2 20101028 4230 Guizotia abyssinica chloroplast AM711901.1 2 20080320 48420 Gulo gulo mitochondrion AP008930.1 2 20101229 42648 Gymnarchus niloticus mitochondrion AB239595.1 2 20090215 75348 Gymnocypris przewalskii mitochondrion AY525784.1 2 20070210 262098 Gymnogobius petschiliensis mitochondrion GQ244471.1 1 20090922 449092 Gymnopis multiplicata mitochondrion AP011980.1 1 20110629 909828 Gymnorhamphichthys sp. NM-2010 mitochondrion AP002976.1 4 20101229 139722 Gymnothorax kidako mitochondrion AP011979.1 1 20110629 94172 Gymnotus carapo mitochondrial DNA AB242164.1 2 20090215 154816 Gyrinocheilus aymonieri mitochondrion AP010884.1 1 20090127 565078 Gyrinomimus myersi mitochondrion AP010883.1 1 20090127 565077 Gyrinomimus sp. UW 113191 mitochondrion AY728230.1 2 20040922 134760 Gyrinophilus porphyriticus mitochondrion EU293891.1 1 20080608 368976 Gyrodactylus derjavinoides mitochondrion DQ988931.1 3 20070420 37629 Gyrodactylus salaris mitochondrion EF527269.1 3 20070728 212345 Gyrodactylus thymalli mitochondrion AY571145.1 2 20050416 130930 Habronattus oregonensis mitochondrion AB075954.1 4 20061114 181088 Haemaphysalis flavamitochondrion DQ029097.1 1 20050605 75445 Haematobia irritans irritans mitochondrion AY074886.2 4 20050527 185689 Haematopus ater mitochondrion EU346694.2 2 20080731 6289 Haemonchus contortus mitochondrion FJ168562.1 2 20090402 77522 Haemoproteus columbae mitochondrion AY733086.1 2 20050701 292793 Haemoproteus sp. jb1.JA27 mitochondrion AY733087.1 2 20050701 292794 Haemoproteus sp. jb2.SEW5141 mitochondrion AP006018.1 2 20081119 215378 Halichoeres melanurus mitochondrion EU082205.1 1 20080831 217853 Halichoeres tenuispinis mitochondrion EU087704.1 1 20080831 147232 Halichoeres trimaculatus mitochondrion X72004.1 13 20050418 9711 Halichoerus grypus mitochondrion AY588938.1 6 20090115 36100 Haliotis rubra mitochondrion FJ599667.1 2 20100503 454124 Haliotis tuberculata tuberculata mitochondrion EU237483.1 2 20080221 253172 Halisarca dujardini mitochondrion HQ606142.1 1 20110102 936147 Halisarca sp. DVL-2010 mitochondrion DQ917432.1 3 20070424 373956 Halocaridina rubra mitochondrion AB024528.1 5 20060227 7729 Halocynthia roretzi mitochondrion FJ685650.1 2 20100702 286706 Halyomorpha halys mitochondrion DQ058142.1 2 20061114 29833 Hanseniaspora uvarum mitochondrion HM754620.1 1 20100811 687869 Hapalogenys nigripinnis mitochondrion AY309259.1 4 20050416 29017 Haplopelma schmidti mitochondrion AB282856.1 1 20100218 412653 Haplophryne mollis mitochondrion AP012012.1 1 20110629 400074 Hara jerdoni mitochondrial DNA AP011592.1 1 20120106 224705 Harengula jaguana mitochondrion AP002919.1 2 20050416 143314 Harpadon microchir mitochondrion AY699271.1 3 20060227 287944 Harpiosquilla harpax mitochondrion AY182005.1 5 20061114 109764 Harpochytrium sp. JEL94 mitochondrion AY182006.1 5 20061114 224131 Harpochytrium sp. JEL105 mitochondrion HM147140.1 2 20101021 765186 Harriotta raleighana mitochondrion GU828005.1 2 20100526 5778 Hartmannella vermiformis mitochondrion EF196664.1 1 20071101 9634 Helarctos malayanus mitochondrion DQ383815.1 3 20070311 4232 Helianthus annuus cultivar line HA383 chloroplast AP002948.1 2 20050416 143344 Helicolenus hilgendorfi mitochondrion GQ332423.1 1 20111016 657295 Heliconema longissimum mitochondrion GQ339576.1 1 20100213 145475 Helicosporidium sp. ex Simulium jonesi mitochondrion DQ398104.1 4 20081126 145475 Helicosporidium sp. ex Simulium jonesii plastid GU188273.1 1 20101028 29058 Helicoverpa armigera mitochondrion AB167711.1 2 20080924 8554 Heloderma suspectum mitochondrion AP012014.1 1 20110629 337700 Helogenes marmoratus mitochondrial DNA AB070241.1 2 20090215 80793 Hemibarbus barbus mitochondrion DQ347953.2 4 20091219 328524 Hemibarbus labeo mitochondrion DQ347952.2 4 20091219 354114 Hemibarbus longirostris mitochondrion DQ345787.2 4 20091219 351240 Hemibarbus mylodon mitochondrion AY728231.1 2 20040922 291265 Hemidactylium scutatum mitochondrion GQ245970.2 2 20110210 47729 Hemidactylus frenatus mitochondrion AB099481.1 3 20050414 217708 Hemiechinus auritus mitochondrion AP011422.1 1 20110513 180931 Hemigrammocypris rasborella mitochondrion AP011990.1 1 20110629 270556 Hemiodopsis gracilis mitochondrion EU725864.1 1 20090917 262124 Hemiphaga novaeseelandiae mitochondrion EU651892.1 3 20080515 464988 Hemiselmis andersenii strain CCMP 644 mitochondrion FJ207523.1 1 20090428 330465 Hemitragus jayakari mitochondrion FJ207531.1 1 20090428 37179 Hemitragus jemlahicus mitochondrion AP006005.1 1 20070920 215362 Heniochus diphreutes mitochondrion FJ168565.1 2 20090402 587286 Hepatocystis sp. ex Pteropus hypomelanus mitochondrion AP011991.1 1 20110629 42563 Hepsetus odoe mitochondrion AY309258.1 5 20050416 216259 Heptathela hangzhouensis mitochondrion FN296153.1 2 20091125 7733 Herdmania momus mitochondrion AY873843.1 2 20050417 140016 Herpestes javanicus mitochondrion AP009582.1 1 20091130 492042 Herwigia kreffti mitochondrion JN242813.1 2 20111019 10181 Heterocephalus glaber mitochondrion, male HQ689652.1 2 20110428 10181 Heterocephalus glaber mitochondrion AP010859.1 2 20101229 391206 Heteroconger hassi mitochondrion AJ310141.1 3 20061114 7792 Heterodontus francisci mitochondrion AF270939.1 5 20061114 145266 Heterodoxus macropus mitochondrion EF626816.1 1 20071227 13085 Heteronotia binoei mitochondrion AP012013.1 1 20110629 93621 Heteropneustes fossilis mitochondrion AB477468.1 2 20110114 173795 Heteropteryx dilatata mitochondrion EF043402.1 1 20061021 37862 Heterorhabditis bacteriophora strain HP88 mitochondrion EU168191.1 3 20090327 2829 Heterosigma akashiwo chloroplast GQ222227.1 2 20101105 2829 Heterosigma akashiwo mitochondrion EU168190.1 2 20090327 2829 Heterosigma akashiwo strain NIES 293 chloroplast AP009498.1 1 20110111 91721 Heterotis niloticus mitochondrion HQ285842.1 1 20110323 3981 Hevea brasiliensis chloroplast EF368011.1 1 20070127 387665 Hexamermis agrotis mitochondrion DQ632742.1 1 20061004 120431 Hiatella arctica mitochondrion AP011613.1 1 20120106 529102 Hilsa kelee mitochondrial DNA, incomplete AB282839.1 1 20100218 412656 Himantolophus albinares mitochondrion AB282840.1 1 20100218 412657 Himantolophus groenlandicus mitochondrion AP004356.2 4 20101229 54904 Hiodon alosoides mitochondrion AP009499.1 1 20110111 466964 Hiodon tergisus mitochondrion GQ868707.1 1 20100928 596577 Hipparchia autonoe mitochondrion AP005985.1 2 20080116 103715 Hippocampus kuda mitochondrion AM749122.1 1 20070723 8267 Hippoglossus hippoglossus mitochondrion AM749126.1 1 20070723 195615 Hippoglossus stenolepis mitochondrion AJ010957.1 3 20050415 9833 Hippopotamus amphibius mitochondrion AP009613.1 1 20110111 112149 Hippopotamyrus wilverthi mitochondrion EU237484.1 2 20080221 479639 Hippospongia lachne mitochondrion AP006807.1 1 20110712 270564 Histiopterus typus mitochondrion FN562582.1 2 20100602 72674 Holothuria forskali mitochondrion AY875213.1 4 20070801 197043 Homalodisca vitripennis mitochondrion AB242165.1 4 20091104 357284 Homaloptera leonardi mitochondrion HQ402925.1 2 20110922 6706 Homarus americanus mitochondrion J01415.2 52 20080718 9606 Homo sapiens mitochondrion isolate HeLa AM948965.1 2 20080820 63221 Homo sapiens neanderthalensis mitochondrion FN673705.1 2 20100527 741158 Homo sp. Altai mitochondrion FR695060.1 2 20110210 741158 Homo sp. Altai mitochondrion, isolate Denisova molar AP011992.1 1 20110629 27720 Hoplias malabaricus mitochondrial DNA AP011543.1 2 20101102 103373 Hoplobatrachus tigerinus mitochondrion AP002938.1 2 20050416 143337 Hoplostethus japonicus mitochondrion AP010865.1 2 20101229 556244 Hoplunnis punctata mitochondrion AP011400.1 1 20110513 432411 Horadandia atukorali mitochondrion EF115541.1 1 20061208 112509 Hordeum vulgare subsp. vulgare cultivar Morex chloroplast HM804473.1 2 20111020 633558 Hucho bleekeri mitochondrion HQ897271.1 1 20111206 201498 Hucho taimen mitochondrion AY660566.1 8 20061114 37429 Huperzia lucidula chloroplast AY442351.1 3 20050416 61971 Huso huso mitochondrion AY456189.1 4 20061114 84335 Hutchinsoniella macracantha mitochondrion AF402142.1 5 20061114 82268 Hyaloraphidium curvatum mitochondrion EU427337.1 1 20081224 498947 Hydaropsis longirostris mitochondrion DQ991932.1 2 20110429 259632 Hydatina physis mitochondrion BN001179.1 3 20111103 6085 Hydra magnipapillata mitochondrial chromosome 1 BN001180.1 3 20111103 6085 Hydra magnipapillata mitochondrial chromosome 2 EU237491.1 2 20100609 6088 Hydra oligactis mitochondrion HM147139.1 2 20101021 334987 Hydrolagus lemures mitochondrion AP011989.1 1 20110629 642551 Hydrolycus scomberoides mitochondrion AY728234.1 2 20040922 57553 Hydromantes brunus mitochondrion FJ456945.1 1 20090618 575833 Hydrometra sp. NKMT020 mitochondrion EU315254.1 1 20081230 9883 Hydropotes inermis mitochondrion AB475096.1 1 20100601 588074 Hydrosaurus amboinensis mitochondrion AM493667.2 1 20090303 426698 Hydroscapha granulum mitochondrion AM181026.1 3 20070821 29086 Hydrurga leptonyx mitochondrion AY458593.1 2 20050708 167933 Hyla chinensis mitochondrion AB303949.1 3 20080109 109175 Hyla japonica mitochondrion AB504748.1 1 20100407 9579 Hylobates agilis mitochondrion X99256.1 6 20050418 9580 Hylobates lar mitochondrion AB504749.1 1 20100407 9589 Hylobates pileatus mitochondrion AM905042.1 2 20080818 48897 Hylomys suillus mitochondrion HM991331.1 1 20110527 247094 Hymenochirus boettgeri mitochondrion AF314223.1 4 20061114 6216 Hymenolepis diminuta mitochondrion DQ333808.1 1 20060511 244216 Hynobius amjiensis mitochondrion EF462213.1 2 20070406 391643 Hynobius arisanensis mitochondrion DQ333819.1 1 20060511 288313 Hynobius chinensis mitochondrion HM036353.1 1 20110909 288313 Hynobius chinensis mitochondrion voucher CIB-XM2853 DQ333816.1 1 20060511 284022 Hynobius formosanus mitochondrion GU384690.1 1 20100127 412855 Hynobius guabangshanensis mitochondrion DQ333811.1 1 20060511 113391 Hynobius leechii mitochondrion HM036356.1 1 20110909 294368 Hynobius nebulosus mitochondrion voucher CIB-XM3140 EF201847.1 1 20080101 113393 Hynobius quelpaertensis mitochondrion HM036352.1 1 20110909 113393 Hynobius quelpaertensis mitochondrion voucher CIB-XM3134 JN415127.1 1 20111101 586894 Hynobius yangi mitochondrion FJ594965.1 2 20100225 586894 Hynobius yangi mitochondrion, isolate JBRI-0816 HM036354.1 1 20110909 244217 Hynobius yiwuensis mitochondrion voucher CIB-XM2843 AB242169.1 2 20090215 61316 Hypentelium nigricans mitochondrion AP011593.1 1 20120106 521031 Hyperlophus vittatus mitochondrion AP006037.1 1 20090822 171196 Hyperoglyphe japonica mitochondrion AJ554056.1 4 20061114 48744 Hyperoodon ampullatus mitochondrion AP011572.1 1 20110111 91725 Hyperopisus bebe mitochondrial DNA GU592049.1 1 20100407 39466 Hyphantria cunea mitochondrion AP004420.1 2 20050416 126353 Hypoatherina tsurugae mitochondrion EU523753.1 1 20080401 139869 Hypochilus thorelli mitochondrion AF447590.1 5 20060831 51453 Hypocrea jecorina mitochondrion AF163325.2 4 20031004 5544 Hypocrea lixii mitochondrial plasmid pThr1 GU584123.1 2 20100907 7389 Hypoderma lineatum mitochondrion GQ244472.1 1 20090922 8450 Hypogeophis rostratus mitochondrion HM106489.1 1 20110310 182223 Hypomesus nipponensis mitochondrion EU315941.1 1 20071212 13095 Hypophthalmichthys molitrix mitochondrion EU343733.1 1 20071225 7965 Hypophthalmichthys nobilis mitochondrion FJ848375.1 1 20091231 184434 Hypoplectrus gemma mitochondrion AP004437.1 2 20050416 166256 Hypoptychus dybowskii mitochondrion AB370892.1 1 20080827 293917 Hyporhamphus sajori mitochondrion AP009506.1 3 20091127 172532 Hypselecara temporalis mitochondrion FR749884.1 1 20101223 232323 Hypsibius dujardini mitochondrion EU728593.1 3 20100421 509065 Hypsiglena chlorophaea chlorophaea mitochondrion EU728587.1 3 20100421 427717 Hypsiglena chlorophaea deserticola mitochondrion EU728592.1 3 20100421 509071 Hypsiglena jani texana mitochondrion EU728589.1 3 20100421 509074 Hypsiglena ochrorhyncha klauberi mitochondrion EU728582.1 3 20100421 509074 Hypsiglena ochrorhyncha klauberi voucher CAS 229918 mitochondrion EU728581.1 3 20100421 427719 Hypsiglena ochrorhyncha nuchalata mitochondrion EU728578.1 3 20100421 509076 Hypsiglena ochrorhyncha ochrorhyncha mitochondrion EU728584.1 3 20100421 509078 Hypsiglena slevini mitochondrion EU728580.1 3 20100421 533186 Hypsiglena sp. DGM2008 mitochondrion EU728591.1 3 20100421 46305 Hypsiglena torquata mitochondrion FJ529186.1 1 20081224 165450 Hyriopsis cumingii mitochondrion HQ641406.1 1 20110131 319528 Hyriopsis schlegelii sex female mitochondrion HQ641407.1 1 20110131 319528 Hyriopsis schlegelii sex male mitochondrion JN122005.1 1 20110816 236520 Ibidoecus bisignatus mitochondrion AP011993.1 1 20110629 909831 Ichthyborus sp. NM-2010 mitochondrion AY458594.1 2 20050708 8453 Ichthyophis bannanicus mitochondrion AY456251.1 3 20081216 194415 Ichthyophis glutinosus mitochondrion JN227086.1 2 20110915 5932 Ichthyophthirius multifiliis strain G5 mitochondrion AF482987.1 3 20050415 7998 Ictalurus punctatus mitochondrion AP009316.1 3 20110302 7973 Ictiobus bubalus mitochondrion EU237485.1 2 20080221 479643 Igernella notabilis mitochondrion AJ278511.2 8 20061114 8517 Iguana iguana mitochondrion AP002917.1 2 20050416 143307 Ijimaia dofleini mitochondrion AP009140.1 1 20070612 373249 Ilisha africana mitochondrion AP009141.1 1 20070612 365054 Ilisha elongata mitochondrion EF380354.1 1 20070624 145286 Illicium oligandrum chloroplast DQ238598.1 3 20060701 34582 Ilyanassa obsoleta mitochondrion FJ456947.1 1 20090618 280203 Ilyocoris cimicoides mitochondrion AP010848.1 2 20101229 391182 Ilyophis brunneus mitochondrion EU728586.1 3 20100421 121343 Imantodes cenchoa mitochondrion HQ337795.1 1 20110627 548148 Indocalamus longiauritus plastid AP004438.1 2 20050416 181450 Indostomus paradoxus mitochondrion DQ080043.1 2 20060210 74920 Indotestudo elongata mitochondrion DQ080044.1 2 20060210 260613 Indotestudo forstenii voucher MVZ 234627 mitochondrion AJ554059.1 4 20061114 9725 Inia geoffrensis mitochondrion EU237486.1 2 20080221 283497 Iotrochota birotulata mitochondrion EU118126.1 3 20080207 4121 Ipomoea purpurea chloroplast GQ337013.1 2 20100220 467775 Ircinia strobilina mitochondrion AB239601.1 2 20090215 180933 Ischikauia steenackeri mitochondrion AP011573.1 1 20110111 112151 Isichthys henryi mitochondrial DNA AB373006.1 1 20080827 492020 Iso hawaiiensis mitochondrion GU191333.1 2 20101216 49763 Isoetes flaccida chloroplast AF358864.1 4 20050527 37698 Isoodon macrourus mitochondrion AB470306.1 1 20090508 13575 Istiophorus platypterus mitochondrion AP011574.1 1 20110111 91714 Ivindomyrus marchei mitochondrial DNA HQ690247.1 1 20110131 188380 Ixobrychus cinnamomeus mitochondrion AF081828.1 2 20050415 34612 Ixodes hexagonus mitochondrion AB075955.1 5 20061114 65647 Ixodes holocyclusmitochondrion AB073725.1 4 20061114 34615 Ixodes persulcatusmitochondrion AB087746.1 3 20061114 59655 Ixodes uriae mitochondrion HQ234669.1 1 20110517 98722 Jacobaea vulgaris chloroplast AJ416890.1 3 20061114 51337 Jaculus jaculus AY771989.1 1 20050716 296598 Japyx solifugus mitochondrion DQ673255.1 5 20070615 126431 Jasminum nudiflorum chloroplast FJ695500.1 2 20110120 180498 Jatropha curcas chloroplast AP006230.1 3 20050826 221866 Jenkinsia lamprotaenia mitochondrion AP009496.1 1 20110111 466963 Jenkinsia sp. CL54 mitochondrion AB470302.1 1 20090508 13721 Kajikia audax mitochondrion JN857943.1 1 20111109 311037 Kallima inachus mitochondrion AY458595.1 2 20050708 167934 Kaloula pulchra mitochondrion U09810.1 8 20100522 34587 Katharina tunicata mitochondrion AB101290.1 2 20050414 8226 Katsuwonus pelamis mitochondrion JN086155.1 1 20110830 8226 Katsuwonus pelamis mitochondrion, voucher KP02-2318 AP010845.1 2 20101229 139721 Kaupichthys hyoproroides mitochondrion AJ430679.1 3 20061114 27293 Kazachstania servazzii mitochondrion AP009175.1 2 20070920 384597 Kentrocapros aculeatus mitochondrion EF622534.1 4 20090224 444732 Keratoisidinae sp. BAL208-1 mitochondrion AP010820.1 3 20110930 3324 Keteleeria davidiana chloroplast FJ915117.1 1 20100930 641010 Kinosternon leucostomum mitochondrion EF222188.1 3 20090326 414978 Kinyongia fischeri mitochondrion AY654900.1 3 20061114 28985 Kluyveromyces lactis mitochondrion AJ554055.1 4 20061114 27615 Kogia breviceps mitochondrion FR839632.1 2 20110725 981350 Komagataella pastoris CBS 7435 mitochondrion, complete replicon AP011612.1 1 20120106 365056 Konosirus punctatus mitochondrion HM535625.1 1 20110701 457521 Koreocobitis naktongensis mitochondrion, isolation source Imgo stream, specimen voucher LEGO-F406 JN607252.1 1 20110926 457521 Koreocobitis naktongensis mitochondrion, specimen voucher SUC-0001 JN607253.1 1 20110926 457520 Koreocobitis rotundicaudata mitochondrion AF283503.1 2 20050415 37003 Kryptolebias marmoratus mitochondrion GU591328.1 1 20100609 160619 Kryptoperidinium foliaceum chloroplast AP011065.1 1 20090822 163137 Kuhlia mugil mitochondrion AP011061.1 1 20090822 163144 Kyphosus cinerascens mitochondrion AP011198.1 2 20110304 295399 Labeo bata mitochondrion AB238967.1 2 20090215 352451 Labeo batesii mitochondrion AB238968.1 2 20090215 198507 Labeo senegalensis mitochondrion AP010856.2 3 20110427 556242 Labichthys carinatus mitochondrion AP009125.1 3 20081119 270574 Labracinus cyclophthalmus mitochondrion AP011062.1 1 20090822 163139 Labracoglossa argentiventris mitochondrion FJ456948.1 1 20090618 575834 Laccotrephes robustus mitochondrion AM176577.1 5 20081023 340657 Lacerta viridis viridis mitochondrion AJ634268.1 4 20061114 381046 Lachancea thermotolerans mitochondrion AP009187.1 2 20110726 319757 Lactoria diaphana mitochondrion AP007232.1 3 20060516 4236 Lactuca sativa chloroplast DQ383816.1 3 20061114 4236 Lactuca sativa cultivar Salinas chloroplast AJ554061.1 4 20061114 27610 Lagenorhynchus albirostris mitochondrion AP011934.1 2 20110708 206128 Lagocephalus laevigatus mitochondrion AP011933.1 2 20110708 546522 Lagocephalus lagocephalus mitochondrion GQ461750.1 1 20091006 204814 Lagocephalus lunaris mitochondrion AP011932.1 2 20110708 229057 Lagocephalus sceleratus mitochondrion AP009538.1 2 20090227 204818 Lagocephalus wheeleri mitochondrion AM262148.1 2 20061114 65634 Lagostrophus fasciatus mitochondrion AP003426.1 1 20090224 9844 Lama glama mitochondrion EU681954.1 2 20100909 9840 Lama guanicoe mitochondrion AJ344328.1 3 20061114 80365 Laminaria digitata mitochondrion EU554423.1 2 20080529 515320 Lamium leaf distortion associated virus Y18683.1 3 20050418 7748 Lampetra fluviatilis mitochondrion AP002924.1 2 20050416 81370 Lampris guttatus mitochondrion AP004410.1 3 20050416 228346 Lamprogrammus niger mitochondrion AY365193.1 3 20061027 81578 Lampsilis ornata mitochondrion FJ360695.1 1 20091224 195883 Laodelphax striatellus mitochondrion JN700945.1 1 20111211 314520 Laomedea flexuosa mitochondrion AB035869.1 2 20050414 93892 Laqueus rubellus mitochondrion EU339149.1 3 20090204 215358 Larimichthys crocea mitochondrion FJ618559.1 1 20100120 334908 Larimichthys polyactis mitochondrion AB501189.1 1 20110929 71402 Larix decidua chloroplast AY293619.1 3 20061121 37036 Larus dominicanus mitochondrion JN209842.1 1 20120202 258930 Lasiurus borealis mitochondrion HM856638.1 1 20110427 85051 Lasmigona compressa, isolate H2390 mitochondrion DQ010541.1 2 20060311 8187 Lates calcarifer mitochondrion HM029371.1 2 20101207 3860 Lathyrus sativus chloroplast U82228.1 8 20050418 7897 Latimeria chalumnae mitochondrion AP006858.2 4 20110119 106881 Latimeria menadoensis mitochondrion AP011995.1 1 20110629 909855 Lebiasina astrigata mitochondrion JN415112.1 1 20120102 196901 Leersia tisserantii plastid AB054126.1 6 20091028 149982 Lefua echigonia mitochondrion EU305668.1 1 20101104 81936 Leggadina lakedownensis mitochondrion GU596454.1 3 20110412 175787 Leiocassis longirostris mitochondrion AB266739.1 1 20090610 211984 Leiocephalus personatus mitochondrion AB476400.1 1 20100601 181671 Leiolepis guttata mitochondrion HM142901.1 1 20101028 118230 Leiopelma archeyi mitochondrion HQ690245.1 1 20110131 201335 Leiothrix argentauris mitochondrion FR798994.1 2 20111216 420245 Leishmania braziliensis MHOM/BR/75/M2904 contig, possible fusion of chromosomes 20 and 34, FR798995.1 3 20120123 420245 Leishmania braziliensis MHOM/BR/75/M2904 contig, possible fusion of chromosomes 20 and 34 AF308683.1 1 20010103 5671 Leishmania infantum kinetoplast minicircle DNA M10126.1 17 20061114 5689 Leishmania tarentolae mitochondrion DQ400350.1 3 20080713 4472 Lemna minor chloroplast AJ421451.1 5 20061114 9447 Lemur catta mitochondrion mitochondrion AY625897.1 2 20050819 72036 Lepeophtheirus salmonis mitochondrion AP009374.1 1 20070414 59292 Lepidium virginicum chloroplast AM258984.1 1 20081031 27788 Lepidochelys olivacea mitochondrion AB162908.1 2 20080924 264485 Lepidophyma flavimaculatum mitochondrion AF335994.2 8 20061114 159971 Lepidopsocidae sp. RS-2001 mitochondrion, AF302934.1 3 20050415 7883 Lepidosiren paradoxa mitochondrion HM070254.1 1 20100816 756882 Lepilemur hubbardorum mitochondrion AB042861.1 6 20101229 7918 Lepisosteus oculatus mitochondrion DQ536423.1 2 20060719 34771 Lepisosteus osseus mitochondrion JN389795.2 2 20111002 13106 Lepomis macrochirus mitochondrion AP011994.1 1 20110629 909832 Leporinus affinis mitochondrial DNA AP011286.1 1 20110513 496985 Leptobarbus hoevenii mitochondrion AB242170.1 2 20090215 357286 Leptobotia mantschurica mitochondrion AP010868.1 2 20101229 556254 Leptocephalus sp. 'type II larva' (Smith, 1989) mitochondrion AP009403.1 1 20080620 443636 Leptochilichthys agassizii mitochondrion AP011428.1 1 20110513 643464 Leptocypris sp. CBM ZF 11419 mitochondrion, except for D-loop EU728590.1 3 20100421 427731 Leptodeira septentrionalis polysticta mitochondrion AP009583.1 1 20091130 492044 Leptoderma lubricum mitochondrion AP011500.1 3 20110519 645280 Leptoderma macrophthalmum mitochondrion AP009584.1 1 20091130 492045 Leptoderma retropinna mitochondrion AM181025.1 4 20070821 9713 Leptonychotes weddellii mitochondrion AY562383.1 3 20050629 60532 Leptorhynchoides thecatus mitochondrion EF506945.1 2 20070718 34116 Leptosira terrestris UTEX 333 chloroplast HM640214.1 2 20110527 135631 Leptotila verreauxi mitochondrion AB194045.1 2 20061114 299468 Leptotrombidium akamushi mitochondrion AB194044.1 3 20061227 299467 Leptotrombidium deliense mitochondrion AB180098.1 5 20061114 279272 Leptotrombidium pallidum mitochondrion GU937113.1 1 20110628 9981 Lepus capensis mitochondrion AJ421471.1 5 20061114 9983 Lepus europaeus mitochondrion AB565771.1 2 20100907 7753 Lethenteron reissneri mitochondrion AP009165.1 2 20070920 182659 Lethrinus obsoletus mitochondrion AB302215.1 2 20080807 211597 Leucocytozoon caulleryi mitochondrion FJ168564.1 2 20090402 587282 Leucocytozoon fringillinarum mitochondrion FJ168563.1 2 20090402 379413 Leucocytozoon majoris mitochondrion AB299369.1 1 20070414 434249 Leucocytozoon sabrazesi mitochondrion JQ034406.1 2 20111129 7782 Leucoraja erinacea mitochondrion FR669150.1 1 20110518 146496 Libelloides macaronius mitochondrion HQ378508.1 1 20120102 76239 Libythea celtis mitochondrion DQ442914.1 3 20060929 96856 Ligia oceanica mitochondrion AY899242.1 4 20091008 613120 Limnonectes bannaensis mitochondrion AY974191.1 3 20061114 120496 Limnonectes fujianensis mitochondrion AF216203.1 2 20050415 6850 Limulus polyphemus mitochondrion FJ839919.1 2 20090819 56195 Lineus viridis mitochondrion DQ321752.1 2 20070604 329969 Liobagrus obesus mitochondrion AP012015.1 1 20110629 78875 Liobagrus reinii mitochondrial DNA AP004101.1 5 20061114 170193 Lipolagus ochotensis mitochondrion AY789529.1 2 20061114 118797 Lipotes vexillifer mitochondrion DQ899947.1 2 20061114 3415 Liriodendron tulipifera chloroplast HQ333260.1 3 20110830 127406 Liriomyza sativae mitochondrion GU327644.1 2 20110317 198433 Liriomyza trifolii mitochondrion EF050073.1 1 20081101 55542 Lissemys punctata mitochondrion AF309492.1 2 20050415 7552 Lithobius forficatus mitochondrion EU517503.1 1 20090204 29019 Litopenaeus stylirostris mitochondrion EF584003.1 3 20081011 6689 Litopenaeus vannamei mitochondrion DQ333810.1 1 20060511 156992 Liua shihi mitochondrion DQ333813.1 1 20060511 245147 Liua tsinpaensis mitochondrion HQ186250.1 1 20111031 7209 Loa loa mitochondrion AM181024.1 4 20070821 101849 Lobodon carcinophaga mitochondrion AP009375.1 1 20070414 226051 Lobularia maritima chloroplast X80245.1 8 20061114 7004 Locusta migratoria mitochondrion GU344101.1 1 20101231 229990 Locusta migratoria manilensis mitochondrion HQ260647.1 1 20110930 229990 Locusta migratoria manilensis mitochondrion EU287446.1 1 20080630 238695 Locusta migratoria migratoria mitochondrion HM219224.1 1 20110531 238696 Locusta migratoria tibetensis mitochondrion AB029616.1 6 20080311 6617 Loligo bleekeri mitochondrion AM777385.2 3 20080929 4522 Lolium perenne complete chloroplast FR821799.1 2 20110922 174260 Lophelia pertusa mitochondrion, isolate NL-1 AB282826.1 1 20100218 314249 Lophiodes caulinaris mitochondrion DQ284754.1 2 20060804 356379 Lophiotoma cerithiformis mitochondrion AP004414.1 4 20101130 8073 Lophius americanus mitochondrion GQ871234.1 1 20100322 228248 Lophophorus lhuysii mitochondrion FJ752432.1 4 20100615 228249 Lophophorus sclateri mitochondrion AB164627.1 1 20080401 9044 Lophura ignita mitochondrion EU417810.1 2 20091009 9046 Lophura nycthemera mitochondrion EF043341.1 1 20091001 406538 Loripes lacteus mitochondrion AB371094.1 1 20090603 9468 Loris tardigradus mitochondrion AP004412.1 2 20050416 69944 Lota lota mitochondrion DQ238599.1 2 20060701 225159 Lottia digitalis mitochondrion AP002983.1 7 20080108 34305 Lotus japonicus chloroplast JN872551.1 3 20120116 34305 Lotus japonicus mitochondrion AB264799.1 3 20090318 393181 Loxocorone allax mitochondrion AJ224821.1 8 20061114 9785 Loxodonta africana mitochondrion AB264800.1 2 20080510 393182 Loxosomella aloxiata mitochondrion GU385217.1 2 20100319 289074 Lubomirskia baicalensis mitochondrion FJ613419.1 2 20091120 590157 Lucanus mazama mitochondrion AJ422212.1 2 20070830 13632 Lucilia sericata mitochondrion EF043342.1 1 20091001 406540 Lucinella divaricata mitochondrion AP011399.1 1 20110513 643386 Luciosoma bleekeri mitochondrion AP011423.1 1 20110513 487620 Luciosoma setigerum mitochondrion, except for D-loop AB183558.1 3 20050819 60585 Luidia quinaria U24570.1 4 20050417 6398 Lumbricus terrestris mitochondrion HQ690246.1 1 20110131 229100 Luscinia calliope mitochondrion JN182927.1 2 20120131 211834 Lutjanus argentimaculatus mitochondrion FJ171339.1 1 20080917 520515 Lutjanus bengalensis mitochondrion GQ265897.1 1 20090927 211835 Lutjanus erythropterus mitochondrion FJ416614.1 1 20081110 396787 Lutjanus kasmira mitochondrion FJ824741.1 1 20090531 218797 Lutjanus malabaricus mitochondrion AP006000.1 1 20070920 215356 Lutjanus rivulatus mitochondrion EF514208.1 1 20070406 232193 Lutjanus russellii mitochondrion FJ824742.1 1 20090531 232192 Lutjanus sebae mitochondrion FJ236015.1 1 20081015 9657 Lutra lutra mitochondrion AP009161.1 2 20070920 75026 Luvarus imperialis mitochondrion AP011563.1 1 20100627 458582 Lycengraulis grossidens mitochondrion AF154053.1 5 20050415 297010 Lyciasalamandra atifi mitochondrion AP004448.1 2 20050416 181467 Lycodes toyamensis mitochondrion FJ456942.1 1 20090618 130591 Lycorma delicatula mitochondrion AP011562.1 1 20100627 686571 Lycothrissa crocodilus mitochondrion FJ617240.1 2 20090813 13123 Lymantria dispar mitochondrion GQ979707.3 3 20100826 61384 Lynx rufus mitochondrion DQ191683.1 1 20050921 344752 Lysiosquillina maculata mitochondrion FJ906803.1 1 20090504 9541 Macaca fascicularis mitochondrion AY612638.1 3 20050416 9544 Macaca mulatta mitochondrion AJ309865.1 4 20061114 9546 Macaca sylvanus mitochondrion EU294187.1 2 20081229 54602 Macaca thibetana mitochondrion FJ797435.1 1 20090316 82204 Macrobrachium lanchesteri mitochondrion HQ830201.1 1 20110117 159736 Macrobrachium nipponense mitochondrion AY659990.1 3 20060216 79674 Macrobrachium rosenbergii mitochondrion EF071948.1 1 20070327 571338 Macrochelys temminckii mitochondrion AP011234.1 1 20110513 516034 Macrochirichthys macrochirus mitochondrion FJ859901.1 3 20091027 528226 Macrogyrus oblongus mitochondrion Y10524.1 10 20061114 9319 Macropus robustus mitochondrion AP009171.1 2 20070920 384593 Macrorhamphosodes uradoi mitochondrion AJ421452.1 4 20061114 29082 Macroscelides proboscideus mitochondrion EU427338.1 1 20081224 498949 Macroscytus subaeneus mitochondrion AJ639871.1 3 20061114 92651 Macrotis lagotis mitochondrion (partial) EU400212.1 1 20080824 123771 Madracis mirabilis mitochondrion HM775382.1 3 20110825 86722 Magnolia kwangsiensis chloroplast AB470305.1 1 20090508 13603 Makaira indica mitochondrion AB470304.1 1 20090508 384371 Makaira mazara mitochondrion DQ080042.1 2 20060211 286009 Malacochersus tornieri voucher MVZ 234632 mitochondrion AP012016.1 1 20110629 337630 Malapterurus electricus mitochondrion AF295546.1 6 20061114 136089 Malawimonas jakobiformis mitochondrion EU427339.1 1 20081224 498929 Malcus inconspicuus mitochondrion HM106491.1 1 20110310 30960 Mallotus villosus mitochondrion EF632344.1 2 20070920 39053 Mammut americanum mitochondrion JF912199.1 1 20110517 1027716 Mammuthus columbi mitochondrion, isolate Huntington DQ188829.2 6 20061115 37349 Mammuthus primigenius mitochondrion JF912200.1 1 20110517 37349 Mammuthus primigenius mitochondrion, isolate IK9970 EU286785.1 1 20080115 7130 Manduca sexta mitochondrion EU117376.1 1 20080311 3983 Manihot esculenta chloroplast JN411577.1 1 20110914 143292 Manis pentadactyla mitochondrion AJ421454.1 5 20061114 73815 Manis tetradactyla mitochondrion DQ080040.1 3 20060316 260614 Manouria emys voucher MVZ 238129 mitochondrion EF661586.1 2 20090107 74924 Manouria impressa mitochondrion AB212225.1 4 20061114 111290 Mantella madagascariensis mitochondrion X04465.1 87 20081023 3197 Marchantia polymorpha chloroplast M68929.1 36 20061114 3197 Marchantia polymorpha mitochondrion AP011575.1 1 20110111 42650 Marcusenius senegalensis mitochondrion HM856634.1 1 20110427 52361 Margaritifera falcata, isolate H2912 mitochondrion AP011937.1 2 20110708 303751 Marilyna darwinii mitochondrion JN204424.1 2 20110909 698441 Marssonina brunnea f. sp. 'multigermtubi' mitochondrion AP006346.1 2 20050519 27405 Marsupenaeus japonicus mitochondrion HM106324.1 1 20110501 9660 Martes americana voucher ROM116315 mitochondrion, FJ719367.1 1 20090303 74864 Martes flavigula mitochondrion HM106326.1 1 20110501 74864 Martes flavigula voucher YP6016 mitochondrion HM106325.1 1 20110501 9659 Martes foina YP6135 mitochondrion GU121228.1 3 20110503 76720 Martes pennanti haplotype schw1 mitochondrion GU121229.1 3 20110503 76720 Martes pennanti haplotype schw4 mitochondrion GU121230.1 3 20110503 76720 Martes pennanti haplotype schw7 mitochondrion GU121231.1 3 20110503 76720 Martes pennanti haplotype schw9 mitochondrion GU121232.1 3 20110503 76720 Martes pennanti haplotype schw11 Canada: British Columbia mitochondrion GU121233.1 3 20110503 76720 Martes pennanti haplotype schw14 USA: Idaho mitochondrion GU121234.1 3 20110503 76720 Martes pennanti haplotype schw17 USA: Minnesota mitochondrion GU121235.1 3 20110503 76720 Martes pennanti haplotype schw18 USA: Minnesota mitochondrion GU121236.1 3 20110503 76720 Martes pennanti haplotype schw19 USA: Wisconsin mitochondrion GU121237.1 3 20110503 76720 Martes pennanti haplotype schw28 mitochondrion HQ705177.1 1 20110508 76720 Martes pennanti isolate MP37 mitochondrion HQ705178.1 1 20110508 76720 Martes pennanti isolate MP38 mitochondrion HQ705179.1 1 20110508 76720 Martes pennanti isolate MP39 mitochondrion HQ705176.1 1 20110508 76720 Martes pennanti isolate MP40 mitochondrion HQ705180.1 1 20110508 76720 Martes pennanti ISOLATE MP41 mitochondrion HM106327.1 1 20110501 76720 Martes pennanti voucher ROM98693 mitochondrion FJ429093.1 1 20081112 36722 Martes zibellina mitochondrion HM106323.1 1 20110501 36722 Martes zibellina voucher YP6023 mitochondrion AP002946.1 2 20050416 143340 Mastacembelus favus mitochondrion EU520643.1 2 20080312 58767 Mastigoproctus giganteus mitochondrion AP006239.1 3 20060325 223211 Masturus lanceolatus mitochondrion AP009404.1 1 20080620 443640 Maulisia mauli mitochondrion HM132059.1 1 20110131 260622 Mauremys megalocephala mitochondrion DQ453753.1 2 20081216 74926 Mauremys mutica mitochondrion FJ469674.1 1 20120102 260615 Mauremys reevesii mitochondrion FJ871126.1 1 20120102 260630 Mauremys sinensis mitochondrion GQ387648.1 3 20090925 39758 Mayetiola destructor mitochondrion GQ888722.1 1 20100213 237660 Mecistocirrus digitatus mitochondrion EF551000.1 1 20080508 184780 Mecistops cataphractus mitochondrion AC093544.8 10 20110325 3880 Medicago truncatula chloroplast AB167539.1 2 20061114 266495 Megabalanus volcano mitochondrion JF288758.1 1 20110330 299257 Megacopta cribraria mitochondrion AB477471.1 2 20110114 590997 Megacrania alpheus adan mitochondrion FJ597983.1 8 20091210 93213 Megaleranthis saniculifolia chloroplast EU434747.1 3 20080227 75352 Megalobrama amblycephala mitochondrion AP004808.1 4 20101229 7932 Megalops atlanticus mitochondrion AB051110.1 4 20101229 118141 Megalops cyprinoides mitochondrion AP006467.1 2 20050416 9773 Megaptera novaeangliae mitochondrion HM583653.1 1 20100827 868576 Mekongiana xiangchengensis mitochondrion HM583654.1 1 20100827 868578 Mekongiella xizangensis mitochondrion AB282838.1 1 20100218 412655 Melanocetus johnsoni mitochondrion AP004418.1 2 20050416 181425 Melanocetus murrayi mitochondrion DQ020497.1 2 20061025 8056 Melanogrammus aeglefinus mitochondrion AP004419.1 2 20050416 120839 Melanotaenia lacustris mitochondrion EF153719.1 4 20110128 9103 Meleagris gallopavo mitochondrion JF275060.1 1 20110220 9103 Meleagris gallopavo strain Nicholas mitochondrion AM711900.1 3 20080403 9662 Meles meles mitochondrion AP009207.1 1 20090110 392900 Melichthys vidua mitochondrion HM106328.1 1 20110501 204267 Melogale moschata YP6128 mitochondrion EF450826.1 1 20070321 13146 Melopsittacus undulatus mitochondrion EF196662.1 1 20071101 9636 Melursus ursinus mitochondrion AB370893.1 1 20080827 238744 Menidia menidia mitochondrion AY542313.1 3 20061121 47692 Menura novaehollandiae mitochondrion HM106332.1 1 20110501 30548 Mephitis mephitis voucher YP2994 mitochondrion GU071281.1 2 20111222 157363 Meretrix lamarckii mitochondrion GQ903339.1 1 20101214 74491 Meretrix lusoria mitochondrion GQ463598.1 1 20090827 291251 Meretrix meretrix mitochondrion EU145977.1 2 20090810 311198 Meretrix petechialis mitochondrion DQ020496.1 3 20061025 8058 Merlangius merlangus mitochondrion FR751402.1 1 20110110 8063 Merluccius merluccius mitochondrion, isolate Mm1 AJ716204.2 11 20070525 123226 Mesobuthus gibbosus mitochondrion DQ340065.1 1 20070813 34649 Mesobuthus martensii mitochondrion EU660218.1 1 20091001 10036 Mesocricetus auratus mitochondrion AF166114.1 4 20061114 41882 Mesostigma viride chloroplast AF353999.1 5 20061114 41882 Mesostigma viride mitochondrion AJ639866.1 3 20061114 42725 Metachirus nudicaudatus mitochondrion (partial) AM944817.1 4 20090902 510302 Metacrangonyx longipes mitochondrion EF624055.1 2 20091201 444703 Metaperipatus inae mitochondrion AY884128.1 2 20061114 5530 Metarhizium anisopliae strain ME1 mitochondrion EF221760.1 1 20070311 34638 Metaseiulus occidentalis mitochondrion GQ888714.1 1 20100213 55275 Metastrongylus pudendotectus mitochondrion GQ888715.1 1 20100213 55276 Metastrongylus salmi mitochondrion AF000023.1 3 20051006 6116 Metridium senile mitochondrion AP009218.1 1 20090110 392920 Meuschenia hippocrepis mitochondrion AB477466.1 2 20110114 590994 Micadina phluctainoides mitochondrion AP011996.1 1 20110629 909833 Micralestes sp. NM-2010 mitochondrion DQ780881.1 4 20061220 56335 Micrastur gilvicollis mitochondrion GQ244473.1 1 20090922 650642 Microcaecilia sp. PZ-2009 mitochondrion AP006009.1 1 20090826 163146 Microcanthus strigatus mitochondrion AM292321.1 3 20100114 341086 Microcosmus sulcatus mitochondrion DQ412044.1 1 20070227 116890 Microcotyle sebastis mitochondrion AP011402.1 1 20110513 487621 Microdevario nana mitochondrion AY458596.1 2 20050708 143525 Microhyla heymonsi mitochondrion AB303950.1 3 20080109 387933 Microhyla okinavensis mitochondrion DQ512876.1 1 20070501 143526 Microhyla ornata mitochondrion DQ991933.1 1 20110119 340426 Micromelo undata mitochondrion FR751401.1 2 20110523 81636 Micromesistius poutassou mitochondrion, isolate Mp1 FJ858269.1 1 20090409 564608 Micromonas pusilla CCMP1545 chloroplast FJ858267.1 1 20090413 296587 Micromonas sp. RCC299 chloroplast FJ859351.1 1 20090413 296587 Micromonas sp. RCC299 mitochondrion AP005986.1 2 20080116 161466 Microphis brachyurus mitochondrion FJ515920.1 1 20101231 581202 Microphysogobio koreensis mitochondrion AB378749.1 2 20100826 147949 Micropterus dolomieu mitochondrion HQ391897.1 1 20101031 225391 Micropterus floridanus mitochondrion DQ536425.1 2 20060719 27706 Micropterus salmoides mitochondrion HQ391896.1 1 20101031 489037 Micropterus salmoides salmoides mitochondrion AP011419.1 1 20110513 432391 Microrasbora erythromicron mitochondrion, except for D-loop AP011598.1 1 20120106 521033 Microthrissa congica mitochondrion AP011596.1 1 20120106 689627 Microthrissa sp. AF2 mitochondrion JF261175.1 2 20110414 311220 Microtus fortis calamorum mitochondrion JF261174.1 2 20110414 311338 Microtus fortis fortis mitochondrion AF348082.1 4 20050603 100899 Microtus kikuchii mitochondrion DQ015676.1 4 20081028 537919 Microtus levis mitochondrion GU045453.1 1 20091102 8637 Micrurus fulvius mitochondrion HM447240.1 1 20100708 240162 Miichthys miiuy mitochondrion FN356025.1 2 20090924 4920 Millerozyma farinosa mitochondrion JN673818.1 2 20120116 56065 Millettia pinnata chloroplast JN872550.1 4 20120116 56065 Millettia pinnata mitochondrion FJ415225.1 2 20090531 106276 Mimachlamys nobilis mitochondrion DQ536432.1 2 20060719 154819 Minytrema melanops mitochondrion AM181023.1 3 20070821 9715 Mirounga leonina mitochondrion DQ026434.1 1 20080906 75329 Misgurnus anguillicaudatus mitochondrion AB242171.1 3 20091028 357287 Misgurnus nikolskyi mitochondrion EU528659.1 1 20081230 57987 Mitsukurina owstoni voucher GN 1057 mitochondrion FJ595959.1 2 20090517 6573 Mizuhopecten yessoensis mitochondrion JF760210.1 2 20111202 27923 Mnemiopsis leidyi mitochondrion AB099482.1 3 20050414 62295 Mogera wogura mitochondrion AP006238.1 3 20060325 94237 Mola mola mitochondrion AP009219.1 1 20090110 392921 Monacanthus chinensis mitochondrion AM181022.1 3 20070821 29088 Monachus schauinslandi mitochondrion FJ859902.1 3 20091027 633873 Mongoloraphidia harmandi mitochondrion AY376688.1 4 20081031 153609 Moniliophthora perniciosa mitochondrion HQ259115.1 1 20110330 221103 Moniliophthora roreri mitochondrion AY182007.1 4 20061114 224130 Monoblepharella sp. JEL15 mitochondrion AP004429.1 2 20050416 181435 Monocentris japonicus mitochondrion AP009169.1 2 20070920 334896 Monodactylus argenteus mitochondrion AJ508398.1 4 20061121 13616 Monodelphis domestica mitochondrion AJ554062.1 4 20061114 40151 Monodon monoceros mitochondrion AP010869.1 2 20101229 556250 Monognathus jesperseni mitochondrion FJ493497.1 1 20090224 141716 Monomastix sp. OKE-1 chloroplast AP002945.1 2 20050416 43700 Monopterus albus mitochondrion AF538053.1 7 20061114 81824 Monosiga brevicollis mitochondrion AP011925.1 2 20110708 862794 Monotrete cochinchinensis mitochondrion HM125538.1 2 20110210 163694 Monsonia speciosa plastid AP008973.1 1 20050721 48500 Montastraea annularis mitochondrion AP008977.1 1 20050721 48498 Montastraea faveolata mitochondrion AP008976.1 1 20050721 48499 Montastraea franksi mitochondrion AY903296.2 4 20050417 246299 Montipora cactus mitochondrion FJ859904.1 3 20091027 633874 Mordella atrata mitochondrion AP010840.1 2 20101229 139719 Moringua edwardsi mitochondrion AP011576.1 1 20110111 91729 Mormyrops anguilloides mitochondrial DNA AP011577.1 1 20110111 91731 Mormyrus rume mitochondrial DNA HM447585.1 1 20100708 34816 Morone saxatilis mitochondrion AY863211.1 4 20061114 78898 Mortierella verticillata mitochondrion DQ226511.1 5 20061205 248361 Morus indica chloroplast EU043465.1 1 20090513 68408 Moschus berezovskii mitochondrion FJ469675.1 2 20100907 68415 Moschus moschiferus mitochondrion AP009317.1 1 20090731 418132 Moxostoma congestum mitochondrion AB242167.1 2 20090215 154821 Moxostoma poecilurum mitochondrion AP002930.1 2 20050416 48193 Mugil cephalus mitochondrion AY239042.1 2 20050416 71854 Muntiacus crinifrons mitochondrion AY225986.1 2 20050416 9888 Muntiacus muntjak mitochondrion AF527537.1 2 20050415 9886 Muntiacus reevesi mitochondrion EF035447.1 1 20061015 256803 Muntiacus reevesi micrurus mitochondrion AP010852.1 2 20101229 118162 Muraenesox bagio mitochondrion AY172335.1 5 20061114 10090 Mus musculus mitochondrion EF108342.1 1 20070227 10091 Mus musculus castaneus strain CAST/EiJ mitochondrion AB042432.1 4 20061114 10092 Mus musculus domesticus mitochondrion AY675564.1 4 20061114 57486 Mus musculus molossinus mitochondrion DQ874614.2 2 20080213 39442 Mus musculus musculus strain PWD/Ph mitochondrion EU352649.1 1 20080501 254704 Mus terricolor mitochondrion GU001953.1 2 20110916 182747 Musculista senhousia mitochondrion GU001954.1 2 20110916 182747 Musculista senhousia voucher Mse-m1 mitochondrion DQ643834.1 2 20060616 214982 Mussa angulosa mitochondrion HM106321.1 1 20110501 55048 Mustela frenata voucher ROM101452 mitochondrion, HM106320.1 1 20110501 272460 Mustela kathiah voucher YP6126 mitochondrion HM106319.1 1 20110501 36239 Mustela nivalis voucher YP1 mitochondrion HM106318.1 1 20110501 9668 Mustela putorius voucher ROM117143 mitochondrion HM106317.1 1 20110501 36240 Mustela sibirica voucher YP6136 mitochondrion AB015962.1 4 20050414 79736 Mustelus manazo mitochondrion AP002922.1 2 20050416 143322 Myctophum affine mitochondrion AP011997.1 1 20110629 909834 Myleus sp. NM-2010 mitochondrion AP010779.1 2 20110302 86918 Mylocheilus caurinus mitochondrion EU979305.1 1 20080813 75356 Mylopharyngodon piceus mitochondrion JN629046.1 1 20111202 82464 Myodes regulus mitochondrion AP009501.1 1 20110111 466965 Myomyrus sp. CU6182 mitochondrion AY345053.2 7 20090414 252580 Myosotella myosotis mitochondrion JN606067.1 1 20111024 252580 Myosotella myosotis mitochondrion HQ184048.1 1 20110621 225401 Myotis formosus mitochondrion AP010862.1 3 20101229 391189 Myrichthys maculosus mitochondrion AP002940.1 2 20050416 47700 Myripristis berndti mitochondrion FJ515782.1 2 20090211 55782 Myrmecobius fasciatus mitochondrion EU938370.1 1 20080930 270849 Myrmecophilus manni mitochondrion AP010847.1 2 20101229 556240 Myroconger compressus mitochondrion AY960981.1 2 20050417 94961 Mystacina tuberculata mitochondrion GQ527172.1 1 20110831 6549 Mytilus californianus mitochondrion, isolate TP14F GQ527173.1 1 20110831 6549 Mytilus californianus mitochondrion, isolate TP226M AY484747.1 2 20050416 6550 Mytilus edulis mitochondrion AY823624.1 6 20060406 6550 Mytilus edulis X Mytilus trossulus mitochondrion AY497292.1 4 20061114 29158 Mytilus galloprovincialis mitochondrion AY823625.1 3 20060302 6551 Mytilus trossulus mitochondrion HM462080.1 2 20110621 6551 Mytilus trossulus mitochondrion, isolate kan12b HM462081.1 2 20110621 6551 Mytilus trossulus mitochondrion, isolate kan35a AJ404477.1 6 20050415 7769 Myxine glutinosa mitochondrion AY526869.1 1 20041030 70543 Myxocyprinus asiaticus mitochondrion AF288092.1 5 20061114 5762 Naegleria gruberi mitochondrion FJ469673.1 2 20100907 37173 Naemorhedus caudatus mitochondrion FJ207532.1 1 20090428 561742 Naemorhedus griseus mitochondrion EU913475.1 1 20081019 8656 Naja atra mitochondrion DQ343648.1 2 20081229 35670 Naja naja mitochondrion FM995166.1 2 20091106 51660 Nakaseomyces bacillisporus mitochondrion FM995164.1 2 20091106 51657 Nakaseomyces delphensis mitochondrion DQ923117.1 3 20070227 41776 Nandina domestica plastid JF519732.1 2 20110719 135770 Nannoperca australis mitochondrion JF519733.1 2 20110719 135771 Nannoperca obscura mitochondrion AJ416891.1 3 20061114 30637 Nannospalax ehrenbergi mitochondrion JN571133.1 1 20111010 1026970 Nannospalax galili mitochondrion, isolate 575 JN571130.1 1 20111010 1026970 Nannospalax galili mitochondrion, isolate 1067 JN571131.1 1 20111010 1026970 Nannospalax galili mitochondrion, isolate 2094 JN571132.1 1 20111010 1026970 Nannospalax galili mitochondrion, isolate 2095 JN571129.1 1 20111010 1026970 Nannospalax galili mitochondrion, iusolate 1034 JN571138.1 1 20111010 191382 Nannospalax golani mitochondrion, isolate 623 JN571134.1 1 20111010 191382 Nannospalax golani mitochondrion, isolate 5121 JN571135.1 1 20111010 134510 Nannospalax judaei mitochondrion, isolate ANZA JN571136.1 1 20111010 134510 Nannospalax judaei mitochondrion, isolate LAHAV HQ324232.1 1 20111019 120498 Nanorana pleskei mitochondrion AP004106.1 4 20061114 170199 Nansenia ardesiaca mitochondrion AP009405.1 1 20080620 443644 Narcetes erimelas mitochondrion AP009585.1 1 20091130 492032 Narcetes stomias mitochondrion AY055727.1 4 20061114 174156 Narceus annularus mitochondrion AM182028.1 1 20070123 394036 Narcissus degeneration virus JF293095.1 1 20110329 170207 Nasalis concolor mitochondrion DQ355298.1 2 20061114 43780 Nasalis larvatus mitochondrion JF293094.1 1 20110329 43780 Nasalis larvatus mitochondrion AP009163.1 2 20070920 238060 Naso lopezi mitochondrion EU827201.1 1 20090918 6485 Nassarius reticulatus mitochondrion AP009376.1 1 20070414 65948 Nasturtium officinale chloroplast HM106331.1 1 20110501 9651 Nasua nasua voucher ROM108237 mitochondrion GQ303444.1 1 20090714 657187 Natural gynogenetic Carassius auratus red var. mitochondrion AF437291.1 3 20050415 27288 Naumovozyma castellii strain NRRL Y-12630 mitochondrion GU176345.1 1 20100713 114905 Naupactus xanthographus mitochondrion DQ472026.1 3 20061114 34576 Nautilus macromphalus mitochondrion AJ417719.2 3 20050415 51031 Necator americanus mitochondrion GU176343.1 1 20100713 219407 Necrophila americana mitochondrion GQ368658.1 1 20090910 324346 Necturus beyeri mitochondrion AM420314.1 2 20080602 344322 Negombata magnifica mitochondrion FJ754269.1 1 20110527 4431 Nelumbo lutea chloroplast FJ754270.1 1 20110527 4432 Nelumbo nucifera chloroplast AP009142.1 1 20070612 373250 Nematalosa japonica mitochondrion DQ643835.1 2 20060616 388630 Nematostella sp. JVK-2006 mitochondrion AP010854.1 2 20101229 118170 Nemichthys scolopaceus mitochondrion AB282837.1 1 20100218 412630 Neoceratias spinifer mitochondrion AF302933.1 4 20061114 7892 Neoceratodus forsteri mitochondrion AP004436.1 2 20050416 181447 Neocyttus rhomboidalis mitochondrion HQ416908.1 1 20110926 798166 Neodon irene specimen from Dege, mitochondrion; DQ257669.1 2 20070525 61452 Neofelis nebulosa mitochondrion DQ068951.1 4 20100427 710152 Neogymnocrinus richeri mitochondrion AP006014.1 2 20081119 32507 Neolamprologus brichardi mitochondrion AY572539.1 3 20061114 266944 Neomaskellia andropogonis mitochondrion FJ169955.1 1 20090831 557178 Neopanorpa pulchra mitochondrion AM181020.1 3 20070821 161930 Neophoca cinerea mitochondrion AP002921.1 2 20050416 143321 Neoscopelus microchir mitochondrion JF325876.1 1 20111213 48534 Neottia nidus-avis plastid HM106322.1 1 20110501 452646 Neovison vison voucher ROM102488 mitochondrion, AY452691.1 1 20060508 70342 Nephila clavata mitochondrion AF137379.1 5 20081001 31312 Nephroselmis olivacea chloroplast AF110138.1 6 20061114 31312 Nephroselmis olivacea mitochondrion EU293739.1 1 20080404 505245 Nephtys sp. 'San Juan Island' YV-2008 mitochondrion JF964960.1 1 20110621 8592 Nerodia sipedon mitochondrion FJ456943.1 1 20090618 575835 Nerthra sp. NKMT022 mitochondrion AY793551.1 3 20061114 299218 Nesomachilis australica mitochondrion AP010850.1 2 20101229 189506 Nessorhamphus ingolfianus mitochondrion AP010864.1 2 20101229 118177 Nettastoma parviceps mitochondrion EU427340.1 1 20081224 498951 Neuroctenus parus mitochondrion X55361.1 14 20090630 5141 Neurospora crassa linear mitochondrial plasmid (maranhar) K03295.1 5 20000307 5141 Neurospora crassa mitochondrial plasmid M37268.1 2 20000304 5142 Neurospora intermedia mitochondrial plasmid AF133505.1 4 20060719 5142 Neurospora intermedia mitochondrial plasmid Harbin-3 X13801.1 4 20061107 5142 Neurospora intermedia mitochondrial plasmid Varkud EF208087.1 1 20081224 85310 Nezara viridula mitochondrion HQ890947.1 2 20111202 240163 Nibea albiflora mitochondrion AP011396.1 1 20110513 352920 Nicholsicypris normalis mitochondrion AB237912.1 8 20070823 4096 Nicotiana sylvestris chloroplast Z00044.2 102 20061114 4097 Nicotiana tabacum chloroplast BA000042.1 9 20110110 4097 Nicotiana tabacum mitochondrion AB240139.1 8 20070823 4098 Nicotiana tomentosiformis chloroplast JN563929.1 2 20110927 118713 Nicotiana undulata chloroplast AY309457.1 4 20050416 57242 Ninox novaeseelandiae mitochondrion AB104902.1 2 20061114 128390 Nipponia nippon mitochondrion isolate:Midori AP008239.1 2 20061114 307441 Nisaetus alboniger mitochondrion AP008238.1 2 20061114 214438 Nisaetus nipalensis mitochondrion AP009308.1 1 20100713 118138 Niwaella delicata mitochondrion HQ622806.1 2 20110128 61852 Nomascus gabriellae mitochondrion AB504751.1 1 20100407 9586 Nomascus siki mitochondrion AP009406.1 1 20080620 443646 Normichthys operosus mitochondrion AP002975.2 4 20101229 143895 Notacanthus chemnitzi mitochondrion AB127393.1 2 20090215 28800 Notemigonus crysoleucas mitochondrion EU650204.1 1 20090101 105023 Nothobranchius furzeri strain GRZ mitochondrion EU660574.1 2 20090612 13813 Nothoceros aenigmaticus mitochondrion EU024482.1 3 20081127 504482 Nothopuga sp. 1 LP-2008 mitochondrion DQ991934.1 2 20110429 407123 Notodoris gardineri mitochondrion AP008924.1 2 20101229 103479 Notopterus notopterus mitochondrion AJ639874.1 3 20061114 37699 Notoryctes typhlops mitochondrion DQ536429.1 2 20060719 28795 Notropis stramineus mitochondrion AP005595.1 1 20041015 8996 Numida meleagris mitochondrion DQ354691.1 3 20070125 77108 Nuphar advena chloroplast GU256221.1 1 20091223 34880 Nyctereutes procyonoides mitochondrion AJ309867.1 4 20061114 9470 Nycticebus coucang mitochondrion JN018412.1 1 20110621 8901 Nycticorax nycticorax mitochondrion AJ627251.1 3 20061114 34301 Nymphaea alba chloroplast HM640215.1 2 20110527 13180 Nymphicus hollandicus mitochondrion DQ666063.1 1 20061107 136195 Nymphon gracile mitochondrion GU177877.1 1 20101031 146711 Occidozyga martensii mitochondrion AF348080.1 5 20050824 134600 Ochotona collaris mitochondrion EF535828.1 1 20080627 130825 Ochotona curzoniae mitochondrion AJ537415.1 4 20061114 9978 Ochotona princeps mitochondrion AM946601.1 1 20080804 319761 Ochrogaster lunifer mitochondrion AF287134.1 4 20061114 2986 Ochromonas danica mitochondrion FJ456950.1 1 20090618 280162 Ochterus marginatus mitochondrion HM544134.1 1 20110830 10160 Octodon degus mitochondrion, voucher 109241 HQ638215.1 1 20110725 89766 Octopus minor mitochondrion AB240156.1 3 20061114 154808 Octopus ocellatus mitochondrion AB158363.1 6 20061114 6645 Octopus vulgaris mitochondrion AP009130.1 3 20081119 241363 Odax cyanomelas mitochondrion AP011595.1 1 20120106 689626 Odaxothrissa sp. AF1 mitochondrion AP009231.1 1 20070612 402404 Odaxothrissa vittata mitochondrion AJ428576.2 5 20061114 62698 Odobenus rosmarus rosmarus mitochondrion JN592050.1 1 20120102 9872 Odocoileus hemionus endogenous virus Cervid endogenous retrovirus CrERVg HQ332445.1 1 20110309 9874 Odocoileus virginianus mitochondrion Z67753.1 13 20050418 2839 Odontella sinensis chloroplast AB370894.1 1 20080827 492019 Odontesthes sp. Odsp-001 mitochondrion DQ010651.1 2 20080812 325276 Odontobutis platycephala mitochondrion AP009208.1 1 20090110 392902 Odonus niger mitochondrion EU513374.1 2 20090416 244712 Oedaleus decorus asiaticus mitochondrion AY728213.1 2 20040922 107992 Oedipina poelzi mitochondrion EU677193.1 2 20081126 55995 Oedogonium cardiacum chloroplast EU262887.1 3 20081216 3940 Oenothera argillicola chloroplast EU262889.1 3 20081216 3942 Oenothera biennis chloroplast AJ271079.3 13 20081118 85636 Oenothera elata subsp. hookeri chloroplast EU262890.1 4 20081229 482428 Oenothera glazioviana chloroplast EU262891.1 3 20081216 482429 Oenothera parviflora chloroplast GQ888716.1 1 20100213 61180 Oesophagostomum dentatum mitochondrion FM161883.1 1 20100519 61181 Oesophagostomum quadrispinulatum mitochondrion HQ616673.1 2 20111005 870730 Ogataea angusta strain DL-1 mitochondrion EU914848.1 2 20100107 133961 Ognevia longipennis mitochondrion AY525783.1 1 20050618 432798 Okamejei kenojei mitochondrion GU228899.2 4 20120111 4146 Olea europaea chloroplast FN996943.2 2 20110726 129566 Olea europaea subsp. cuspidata complete chloroplast genome, isolate Almihwit 5.1 FN996944.1 2 20110726 129566 Olea europaea subsp. cuspidata complete chloroplast genome, isolate Guanghzou 1 FN650747.2 2 20110726 129566 Olea europaea subsp. cuspidata complete chloroplast genome, isolate Maui 1 FN996972.1 3 20110906 158383 Olea europaea subsp. europaea complete chloroplast genome, cultivar Manzanilla FN997651.1 2 20110729 158383 Olea europaea subsp. europaea complete chloroplast genome, isolate Gue de Constantine 20 FN997650.2 3 20110729 158383 Olea europaea subsp. europaea isolate Haut Atlas 1 FN998900.2 2 20110729 158385 Olea europaea subsp. maroccana complete chloroplast genome, isolate Immouzzer S1 FN998901.1 2 20110729 497767 Olea woodiana subsp. woodiana complete chloroplast genome, specimen voucher A. Costa 02 (MPU) AP009368.1 1 20070414 74718 Olimarabidopsis pumila chloroplast DQ291132.1 2 20061114 51324 Oltmannsiellopsis viridis chloroplast DQ365900.1 2 20061114 51324 Oltmannsiellopsis viridis mitochondrion AP011936.1 2 20110708 862801 Omegophora armilla mitochondrion AY345048.2 7 20090414 36933 Onchidella celtica mitochondrion HQ214004.1 1 20111101 387005 Onchocerca flexuosa mitochondrion AF015193.1 3 20000303 6282 Onchocerca volvulus mitochondrion JN710452.1 1 20120120 1100885 Oncicola luehei mitochondrion GQ324949.1 2 20100615 96474 Oncidium Gower Ramsey chloroplast FJ997214.1 1 20090727 56141 Oncomelania hupensis mitochondrion EU001660.1 1 20090630 111462 Oncomelania hupensis hupensis mitochondrion JF284686.1 1 20111004 111462 Oncomelania hupensis hupensis mitochondrion, isolate AHGD-1 JF284695.1 1 20111004 111462 Oncomelania hupensis hupensis mitochondrion, isolate FJFQ JF284698.1 1 20111004 111462 Oncomelania hupensis hupensis mitochondrion, isolate FLB JF284696.1 1 20111004 111462 Oncomelania hupensis hupensis mitochondrion, isolate GXBS JF284689.1 1 20111004 111462 Oncomelania hupensis hupensis mitochondrion, isolate HBGA JF284690.1 1 20111004 111462 Oncomelania hupensis hupensis mitochondrion, isolate HBJL JF284692.1 1 20111004 111462 Oncomelania hupensis hupensis mitochondrion, isolate HNYY JF284688.1 1 20111004 111462 Oncomelania hupensis hupensis mitochondrion, isolate JSYZ JF284693.1 1 20111004 111462 Oncomelania hupensis hupensis mitochondrion, isolate JXSR JF284697.1 1 20111004 111462 Oncomelania hupensis hupensis mitochondrion, isolate SCMS JF284691.1 1 20111004 111462 Oncomelania hupensis hupensis mitochondrion, isolate SCXC JF284694.1 1 20111004 111462 Oncomelania hupensis hupensis mitochondrion, isolate ZJJH EU079378.1 1 20090831 105595 Oncomelania hupensis robertsoni mitochodrion AY886762.1 3 20060616 72053 Oncorhynchus clarkii henshawi mitochondrion EF455489.1 1 20070406 8017 Oncorhynchus gorbuscha mitochondrion EF126369.1 1 20070330 8019 Oncorhynchus kisutch mitochondrion EF105342.1 1 20070330 412663 Oncorhynchus masou 'Biwa' mitochondrion DQ858456.1 1 20061231 173242 Oncorhynchus masou formosanus mitochondrion DQ864464.1 1 20061231 8021 Oncorhynchus masou ishikawae mitochondrion DQ864465.1 1 20061231 90313 Oncorhynchus masou masou mitochondrion L29771.1 8 20061114 8022 Oncorhynchus mykiss mitochondrion EF055889.1 1 20061115 8023 Oncorhynchus nerka mitochondrion AF392054.1 2 20050415 74940 Oncorhynchus tshawytscha mitochondrion AB282843.1 1 20100218 412658 Oneirodes thompsoni mitochondrion HQ258894.1 1 20110601 43130 Onion yellow dwarf virus isolate MS/SW1 AB219833.1 2 20081213 43130 Onion yellow dwarf virus isolate: G79 FJ555185.1 1 20100216 583350 Onisimus nanseni mitochondrion AY639938.1 3 20060901 280588 Onychiurus orientalis mitochondrion, partial DQ333820.1 1 20060511 113382 Onychodactylus fischeri mitochondrion FN562577.1 2 20100602 55617 Ophiocomina nigra mitochondrion EU921899.1 1 20081019 8665 Ophiophagus hannah mitochondrion AF314589.1 2 20050415 35052 Ophiopholis aculeata mitochondrion AP002978.1 4 20101229 118157 Ophisurus macrorhynchos mitochondrion AM404180.1 2 20080512 72672 Ophiura albida mitochondrion AY184223.1 2 20050416 224378 Ophiura lutkeni mitochondrion HM367070.1 1 20101028 121214 Opilio parietinus mitochondrion HM008997.1 1 20100609 574546 Opisthopatus cinctipes mitochondrion AP004110.1 4 20061114 170206 Opisthoproctus soleatus mitochondrion EU921260.2 4 20100826 147828 Opisthorchis felineus mitochondrion DQ872160.1 1 20070406 163134 Oplegnathus fasciatus mitochondrion AP011066.1 1 20090822 163135 Oplegnathus punctatus mitochondrion AB218720.1 1 20090610 332245 Oplurus grandidieri mitochondrion DQ367044.1 4 20070724 141458 Opsariichthys bidens mitochondrion AB218897.1 2 20090215 39568 Opsariichthys uncirostris mitochondrion GQ292769.1 2 20100813 337810 Oratosquilla oratoria mitochondrion AY961084.1 1 20060331 195264 Orbinia latreillii mitochondrion JF289177.1 1 20110324 48747 Orcaella brevirostris mitochondrion, isolate 97 JF339977.1 1 20110318 682059 Orcaella heinsohni isolate Orchei28 mitochondrion EU016195.1 1 20080331 48706 Orchesella villosa mitochondrion HQ405752.1 3 20110928 9733 Orcinus orca mitochondrion FJ207535.1 1 20090428 34873 Oreamnos americanus mitochondrion GU370125.1 1 20100119 47969 Oreochromis aureus mitochondrion AY597335.1 1 20050731 8127 Oreochromis mossambicus mitochondrion GU238433.1 1 20091223 8128 Oreochromis niloticus mitochondrion GU477628.1 1 20110131 8128 Oreochromis niloticus strain America mitochondrion GU477625.1 1 20110131 8128 Oreochromis niloticus strain Egypt mitochondrion GU477624.1 1 20110131 8128 Oreochromis niloticus strain GIFT mitochondrion GU477627.1 1 20110131 8128 Oreochromis niloticus strain Guangdong mitochondrion GU477626.1 1 20110131 8128 Oreochromis niloticus strain Philippines mitochondrion HM067614.1 1 20100421 743960 Oreochromis sp. 'red tilapia' mitochondrion, strain Guam GU477631.1 1 20110131 743960 Oreochromis sp. 'red tilapia' mitochondrion,strain Florida AP009126.1 3 20081119 371725 Oreochromis sp. KM-2006 mitochondrion EU427341.1 1 20081224 82746 Orius niger mitochondrion AB073679.1 7 20100601 6938 Ornithodoros moubatamitochondrion AB105451.1 4 20061114 34594 Ornithodoros porcinus mitochondrion X83427.1 12 20061114 9258 Ornithorhynchus anatinus mitochondrion JF800076.1 2 20110928 1035536 Oroperipatus sp. DVL-2011 mitochondrion FJ478174.1 3 20090612 576952 Orussus occidentalis mitochondrion Y18475.1 5 20061114 9818 Orycteropus afer mitochondrion AJ001588.1 4 20061114 9986 Oryctolagus cuniculus mitochondrion JN869311.1 1 20111121 59534 Oryx dammah mitochondrion JN869312.1 1 20111121 9958 Oryx gazella mitochondrion AP006728.1 6 20061114 4536 Oryza nivara chloroplast AP011076.1 2 20100427 4529 Oryza rufipogon mitochondrion D00293.1 5 20060315 4530 Oryza sativa mitochondrial plasmid-like DNA B1 AY522329.1 5 20110325 39946 Oryza sativa Indica Group chloroplast D00564.1 5 20071128 39946 Oryza sativa Indica Group mitochondrial plasmid-like DNA B2 DQ167399.1 2 20060701 39946 Oryza sativa Indica Group mitochondrion X15901.1 117 20081023 39947 Oryza sativa Japonica Group chloroplast AY522330.1 5 20110325 39947 Oryza sativa Japonica Group cultivar Nipponbare chloroplast DQ167400.1 2 20060701 39947 Oryza sativa Japonica Group cultivar Nipponbare mitochondrion GU592207.1 2 20110327 39947 Oryza sativa Japonica Group cultivar Nipponbare voucher AC01-1001045 chloroplast BA000029.3 12 20080222 39947 Oryza sativa Japonica Group mitochondrion GU013789.1 1 20091021 291360 Oryzias dancena isolate Indonesia mitochondrion AB498069.1 1 20090715 291360 Oryzias dancena mitochondrion AB498067.1 1 20090715 123683 Oryzias javanicus mitochondrion AP004421.1 2 20050416 8090 Oryzias latipes mitochondrion AB498064.1 1 20090715 104659 Oryzias luzonensis mitochondrion AB498068.1 1 20090715 123685 Oryzias minutillus mitochondrion GU013788.1 2 20111006 183150 Oryzias sinensis mitochondrion GQ244474.1 1 20090922 543905 Oscaecilia ochrocephala mitochondrion EF081250.1 1 20070205 386100 Oscarella carmela mitochondrion HQ269361.1 2 20110128 121494 Oscarella lobularis mitochondrion HQ269364.1 2 20110128 908211 Oscarella malakhovi mitochondrion HQ269355.1 2 20110128 764031 Oscarella microlobata mitochondrion HQ269353.1 2 20110128 252962 Oscarella tuberculata mitochondrion HQ269358.1 2 20110128 764033 Oscarella viridis mitochondrion, isolate DL030 HM106493.1 1 20110310 8014 Osmerus mordax mitochondrion AB043025.1 4 20101229 109271 Osteoglossum bicirrhosum mitochondrion AM493868.1 2 20080326 184242 Osteolaemus tetraspis mitochondrion AP004431.1 2 20050416 181437 Ostichthys japonicus mitochondrion AP009176.1 2 20070920 384598 Ostracion immaculatus mitochondrion HM015199.1 1 20110309 74434 Ostrea denselamellosa mitochondrion JF274008.1 1 20111028 37623 Ostrea edulis mitochondrion CR954199.2 3 20070531 70448 Ostreococcus tauri chloroplast CR954200.2 4 20070328 70448 Ostreococcus tauri mitochondrion AF467260.1 4 20061208 93504 Ostrinia furnacalis mitochondrion AF442957.1 8 20081026 29057 Ostrinia nubilalis mitochondrion FJ751803.1 2 20100921 73107 Otis tarda mitochondrion AB371093.1 1 20090603 9463 Otolemur crassicaudatus mitochondrion JN615139.1 1 20111024 999270 Ovatella vulcani mitochondrion FJ207536.1 1 20090428 37176 Ovibos moschatus mitochondrion HM236188.1 3 20120120 30527 Ovis ammon mitochondrion AF010406.1 7 20050415 9940 Ovis aries mitochondrion JN181255.1 2 20111214 37174 Ovis canadensis mitochondrion HM236186.1 3 20120120 59896 Ovis vignei mitochondrion AB175670.1 3 20080924 8769 Ovophis okinavensis mitochondrion JN831381.1 1 20111109 1109017 Oxuderces dentatus mitochondrion EF437157.1 2 20080101 165482 Oxya chinensis mitochondrion AP009221.1 1 20090110 303724 Oxymonacanthus longirostris mitochondrion DQ333812.1 1 20060511 288317 Pachyhynobius shangchengensis mitochondrion AY278317.1 2 20061114 38123 Pachypsylla venusta mitochondrion AP011287.1 1 20110513 643344 Paedocypris progenetica mitochondrion, except for D-loop AP011429.1 1 20110513 643392 Paedocypris sp. Banka Is. mitochondrion, except for D-loop AB305023.1 2 20080222 98819 Pagellus bogaraveo mitochondrion AB124801.1 2 20050414 63415 Pagrus auriga mitochondrion AP002949.1 2 20050416 143350 Pagrus major mitochondrion AF150756.1 3 20050415 111067 Pagurus longicarpus mitochondrion FJ541030.1 2 20100220 161718 Palea steindachneri mitochondrion AM493870.1 2 20080326 84099 Paleosuchus palpebrosus mitochondrion AM493869.1 2 20080326 38658 Paleosuchus trigonatus mitochondrion EU357803.1 3 20100826 697302 Pampus sp. LY-2009 mitochondrion D38116.1 19 20050417 9597 Pan paniscus mitochondrion JF727220.2 3 20111027 9597 Pan paniscus mitochondrion, isolate Api JF727227.2 3 20111027 9597 Pan paniscus mitochondrion, isolate Bandundu JF727223.1 3 20111027 9597 Pan paniscus mitochondrion, isolate Billi_L JF727238.2 3 20111027 9597 Pan paniscus mitochondrion, isolate Boende JF727237.1 3 20111027 9597 Pan paniscus mitochondrion, isolate Bolobo JF727235.1 3 20111027 9597 Pan paniscus mitochondrion, isolate Fizi JF727234.1 3 20111027 9597 Pan paniscus mitochondrion, isolate Isiro JF727222.1 3 20111027 9597 Pan paniscus mitochondrion, isolate Keza JF727225.1 3 20111027 9597 Pan paniscus mitochondrion, isolate Kikwit JF727232.2 3 20111027 9597 Pan paniscus mitochondrion, isolate Kisantu JF727219.1 3 20111027 9597 Pan paniscus mitochondrion, isolate Kubulu JF727236.1 3 20111027 9597 Pan paniscus mitochondrion, isolate Likasi JF727231.3 3 20111027 9597 Pan paniscus mitochondrion, isolate Lipopo JF727226.2 3 20111027 9597 Pan paniscus mitochondrion, isolate Lodja JF727228.2 3 20111027 9597 Pan paniscus mitochondrion, isolate Lomami JF727229.1 3 20111027 9597 Pan paniscus mitochondrion, isolate Malou_L JF727233.1 3 20111027 9597 Pan paniscus mitochondrion, isolate Matadi JF727224.2 3 20111027 9597 Pan paniscus mitochondrion, isolate Max JF727221.1 3 20111027 9597 Pan paniscus mitochondrion, isolate Semendwa JF727230.2 3 20111027 9597 Pan paniscus mitochondrion, isolate Tshilomba D38113.1 17 20050417 9598 Pan troglodytes mitochondrion JF727179.2 3 20111027 9598 Pan troglodytes mitochondrion, isolate Akim JF727173.1 3 20111027 9598 Pan troglodytes mitochondrion, isolate Cherie JF727166.2 3 20111027 9598 Pan troglodytes mitochondrion, isolate Christophe JF727176.2 3 20111027 9598 Pan troglodytes mitochondrion, isolate Flo HM068585.1 2 20110210 756884 Pan troglodytes ellioti mitochondrion JF727205.1 3 20111027 756884 Pan troglodytes ellioti mitochondrion, isolate Emma JF727202.2 3 20111027 756884 Pan troglodytes ellioti mitochondrion, isolate VC1 JF727203.1 3 20111027 756884 Pan troglodytes ellioti mitochondrion, isolate VC2 JF727204.1 3 20111027 756884 Pan troglodytes ellioti mitochondrion, isolate VC3 GU112740.1 1 20091201 37010 Pan troglodytes schweinfurthii mitochondrion JF727196.1 3 20111027 37010 Pan troglodytes schweinfurthii mitochondrion, isolate Asega JF727189.2 3 20111027 37010 Pan troglodytes schweinfurthii mitochondrion, isolate Bahati JF727185.2 3 20111027 37010 Pan troglodytes schweinfurthii mitochondrion, isolate Becky JF727188.1 3 20111027 37010 Pan troglodytes schweinfurthii mitochondrion, isolate Cindy JF727200.1 3 20111027 37010 Pan troglodytes schweinfurthii mitochondrion, isolate Eddy JF727191.1 3 20111027 37010 Pan troglodytes schweinfurthii mitochondrion, isolate Ikuru JF727198.1 3 20111027 37010 Pan troglodytes schweinfurthii mitochondrion, isolate Indi JF727190.2 3 20111027 37010 Pan troglodytes schweinfurthii mitochondrion, isolate Kazahukire JF727187.1 3 20111027 37010 Pan troglodytes schweinfurthii mitochondrion, isolate Kidogo JF727197.1 3 20111027 37010 Pan troglodytes schweinfurthii mitochondrion, isolate Kisembo JF727182.2 3 20111027 37010 Pan troglodytes schweinfurthii mitochondrion, isolate Mawa JF727193.1 3 20111027 37010 Pan troglodytes schweinfurthii mitochondrion, isolate Megan JF727201.2 3 20111027 37010 Pan troglodytes schweinfurthii mitochondrion, isolate Mika JF727183.1 3 20111027 37010 Pan troglodytes schweinfurthii mitochondrion, isolate Nakuu JF727186.1 3 20111027 37010 Pan troglodytes schweinfurthii mitochondrion, isolate Nani JF727199.2 3 20111027 37010 Pan troglodytes schweinfurthii mitochondrion, isolate Okech JF727192.2 3 20111027 37010 Pan troglodytes schweinfurthii mitochondrion, isolate Robbie JF727184.1 3 20111027 37010 Pan troglodytes schweinfurthii mitochondrion, isolate Sally JF727194.1 3 20111027 37010 Pan troglodytes schweinfurthii mitochondrion, isolate Umutama GU112738.1 1 20091201 37011 Pan troglodytes troglodytes mitochondrion JF727168.1 3 20111027 37011 Pan troglodytes troglodytes mitochondrion, isolate Agnagui JF727165.2 3 20111027 37011 Pan troglodytes troglodytes mitochondrion, isolate Bailele JF727174.1 3 20111027 37011 Pan troglodytes troglodytes mitochondrion, isolate Bimangou JF727175.1 3 20111027 37011 Pan troglodytes troglodytes mitochondrion, isolate Botsomi JF727163.1 3 20111027 37011 Pan troglodytes troglodytes mitochondrion, isolate Castro JF727171.1 3 20111027 37011 Pan troglodytes troglodytes mitochondrion, isolate Chinoc JF727172.2 3 20111027 37011 Pan troglodytes troglodytes mitochondrion, isolate Clara JF727169.1 3 20111027 37011 Pan troglodytes troglodytes mitochondrion, isolate Dzeke JF727164.2 3 20111027 37011 Pan troglodytes troglodytes mitochondrion, isolate Fan-Tueck JF727170.2 3 20111027 37011 Pan troglodytes troglodytes mitochondrion, isolate Gao JF727177.1 3 20111027 37011 Pan troglodytes troglodytes mitochondrion, isolate Golfi JF727180.2 3 20111027 37011 Pan troglodytes troglodytes mitochondrion, isolate Loufoumbou JF727181.1 3 20111027 37011 Pan troglodytes troglodytes mitochondrion, isolate Lufino JF727167.2 3 20111027 37011 Pan troglodytes troglodytes mitochondrion, isolate Marcelle JF727162.2 3 20111027 37011 Pan troglodytes troglodytes mitochondrion, isolate Moka GU112742.1 1 20091201 91950 Pan troglodytes vellerosus mitochondrion GU112739.1 1 20091201 37012 Pan troglodytes verus mitochondrion JF727206.1 3 20111027 37012 Pan troglodytes verus mitochondrion, isolate Annaclara JF727216.1 3 20111027 37012 Pan troglodytes verus mitochondrion, isolate Cookie JF727210.3 3 20111027 37012 Pan troglodytes verus mitochondrion, isolate Frits JF727214.1 3 20111027 37012 Pan troglodytes verus mitochondrion, isolate Hilko JF727218.1 3 20111027 37012 Pan troglodytes verus mitochondrion, isolate King-Louis JF727208.2 3 20111027 37012 Pan troglodytes verus mitochondrion, isolate Liesbeth JF727207.2 3 20111027 37012 Pan troglodytes verus mitochondrion, isolate Louise JF727209.1 3 20111027 37012 Pan troglodytes verus mitochondrion, isolate Marco JF727211.2 3 20111027 37012 Pan troglodytes verus mitochondrion, isolate Oscar JF727217.3 3 20111027 37012 Pan troglodytes verus mitochondrion, isolate Regina JF727215.1 3 20111027 37012 Pan troglodytes verus mitochondrion, isolate Ricky JF727212.2 3 20111027 37012 Pan troglodytes verus mitochondrion, isolate Robert JF727213.1 3 20111027 37012 Pan troglodytes verus mitochondrion, isolate Wubbo AY582139.1 4 20050416 4054 Panax ginseng chloroplast DQ780884.1 3 20061220 56262 Pandion haliaetus mitochondrion AY762971.1 3 20061227 30993 Pangasianodon gigas mitochondrion AP012018.1 1 20110629 365580 Pangasius larnaudii mitochondrion AB242168.1 2 20090215 357285 Pangio anguillaris mitochondrion HQ731441.1 4 20111214 38727 Panicum virgatum chloroplast cultivar Kanlow HQ822121.1 4 20111214 38727 Panicum virgatum chloroplast cultivar Summer HM367068.1 2 20110123 50023 Panonychus citri mitochondrion EU682403.1 6 20100519 50024 Panonychus ulmi mitochondrion EF551002.1 1 20080508 9691 Panthera pardus mitochondrion EF551003.1 1 20080508 9694 Panthera tigris mitochondrion JF357973.1 1 20110714 74533 Panthera tigris altaica mitochondrion JF357974.1 1 20110714 74533 Panthera tigris altaica mitochondrion HM589214.1 2 20110904 253258 Panthera tigris amoyensis isolate P25 mitochondrion HM589215.1 2 20110904 253258 Panthera tigris amoyensis isolate P27 mitochondrion JF357969.1 1 20110714 9695 Panthera tigris sumatrae mitochondrion, isolate SUMATRA1 JF357970.1 1 20110714 9695 Panthera tigris sumatrae mitochondrion, isolate SUMATRA2 JF357967.1 1 20110714 74535 Panthera tigris tigris mitochondrion JF357968.1 1 20110714 74535 Panthera tigris tigris mitochondrion,isolate TIGRIS2 DQ523162.1 2 20070818 271451 Pantherophis slowinskii mitochondrion DQ191826.1 2 20051006 59538 Pantholops hodgsonii mitochondrion AB043068.1 4 20101229 8276 Pantodon buchholzi mitochondrion JN542716.1 1 20110920 150425 Panulirus homarus mitochondrion AB071201.1 5 20061228 6736 Panulirus japonicus mitochondrial GQ223286.1 2 20110630 150431 Panulirus ornatus mitochondrion HM446347.1 1 20110216 150431 Panulirus ornatus mitochondrion, isolation source Hainan Island GQ292768.1 2 20100826 71578 Panulirus stimpsoni mitochondrion GU269271.1 2 20110126 345428 Paphia euglypta mitochondrion FJ810212.1 1 20100407 501396 Papilio maraho mitochondrion Y18001.1 5 20050418 9557 Papio hamadryas mitochondrion AP008926.1 2 20101229 311468 Papyrocranus congoensis mitochondrion J04815.1 39 20061114 7656 Paracentrotus lividus mitochondrion AP011999.1 1 20110629 42492 Paracheirodon innesi mitochondrial DNA FJ968741.1 2 20090913 3074 Parachlorella kessleri chloroplast JN861751.1 1 20111113 1111055 Paracladura trichoptera mitochondrion AY955840.1 3 20070628 121759 Paracoccidioides brasiliensis mitochondrion AP010860.1 2 20101229 391200 Paraconger notialis mitochondrion AB595189.1 1 20110412 536042 Paracorallium japonicum mitochondrion EU877959.1 1 20090323 565004 Paracyclopina nana mitochondrion DQ333822.1 1 20060511 363225 Paradactylodon gorganensis mitochondrion DQ333821.1 1 20060511 324332 Paradactylodon mustersi mitochondrion EU349015.1 1 20081008 490128 Parafronurus youi mitochondrion AF219379.2 7 20061114 34504 Paragonimus westermani mitochondrion FJ168561.1 2 20090402 587285 Parahaemoproteus vireonis mitochondrion EF192032.2 2 20110227 356780 Parajulis poecilepterus mitochondrion AP007279.1 1 20060224 299325 Parakneria cameronensis mitochondrion AP011211.1 1 20110302 516036 Paralaubuca typus mitochondrion AB028664.1 11 20090215 8255 Paralichthys olivaceus mitochondrion AP009222.1 1 20090110 303718 Paraluteres prionurus mitochondrion X15917.1 31 20050418 5889 Paramecium aurelia mitochondrion FN424190.1 2 20110610 5885 Paramecium caudatum mitochondrion AY458597.1 2 20050708 164972 Paramesotriton hongkongensis mitochondrion AP009223.1 1 20090110 392923 Paramonacanthus choirocephalus mitochondrion AP009614.1 1 20110111 91733 Paramormyrops gabonensis mitochondrion AP011579.1 1 20110111 687777 Paramormyrops sp. CU 6227 mitochondrial DNA AP011581.1 1 20110111 687779 Paramormyrops sp. CU 6230 mitochondrial DNA AP011578.1 1 20110111 687776 Paramormyrops sp. CU 6239 mitochondrial DNA AP011580.1 1 20110111 687778 Paramormyrops sp. CU 6246 mitochondrial DNA GU564481.1 3 20110904 743461 Paranemertes cf. peregrina SCS-2010 mitochondrion FJ456951.1 1 20090618 575836 Paraplea frontalis mitochondrion AP009168.1 2 20070920 360507 Parapristipoma trilineatum mitochondrion EF107158.1 2 20071101 255644 Parargyrops edita mitochondrion AY619710.1 3 20050416 34758 Paraspadella gotoi mitochondrion AB525762.1 1 20091016 683134 Parastichopus nigripunctatus mitochondrion AP010886.1 1 20090127 565083 Parataeniophorus gulosus mitochondrion AP009508.1 3 20091127 80772 Paratilapia polleni mitochondrion AP004433.1 2 20050416 181440 Parazen pacificus mitochondrion AP009504.1 3 20091127 238224 Paretroplus maculatus mitochondrion AP012017.1 1 20110629 390428 Pareutropius debauwi mitochondrion FJ871125.1 1 20100407 213924 Parnassius bremeri mitochondrion GU120098.1 1 20091130 35935 Parthenium argentatum chloroplast HQ389540.1 2 20110601 1032457 Passion fruit mosaic virus HQ122652.1 3 20110323 31732 Passion fruit woodiness virus, isolate PWV-MU2 D16387.1 14 20100615 7594 Patiria pectinifera mitochondrion CP000815.1 2 20100421 39717 Paulinella chromatophora chromatophore HQ457012.1 1 20120102 933850 Pauropus longiramus mitochondrion EU417811.1 2 20091009 9050 Pavo muticus mitochondrion DQ643836.1 2 20060616 367766 Pavona clavus mitochondrion AP003427.1 1 20090224 9829 Pecari tajacu mitochondrion EU621793.1 2 20081224 518099 Pedetontus silvestrii mitochondrion FJ968740.1 2 20090913 3159 Pedinomonas minor chloroplast AF116775.1 6 20061114 3159 Pedinomonas minor mitochondrion JN615140.1 1 20111024 999235 Pedipes pedipes mitochondrion AP005984.1 2 20080116 215342 Pegasus volitans mitochondrion AP011938.1 2 20110708 862803 Pelagocephalus marki mitochondrion DQ897681.1 2 20061114 4031 Pelargonium x hortorum chloroplast AB239597.1 2 20090215 317925 Pelecus cultratus mitochondrion AP009619.1 1 20100627 260506 Pellona flavipinnis mitochondrion AP009232.1 1 20070612 402406 Pellonula leonensis mitochondrion AJ871086.1 2 20061114 61616 Pelobates cultripes mitochondrion JN016746.1 1 20110621 171793 Pelochelys cantorii mitochondrion, isolate Xiamen JN016747.1 1 20110621 171793 Pelochelys cantorii mitochondrion, isolate Yongjia AF039066.1 6 20050415 44522 Pelomedusa subrufa mitochondrion HM641815.1 1 20110731 192075 Pelteobagrus fulvidraco mitochondrion HM746659.1 1 20110102 175791 Pelteobagrus nitidus mitochondrion HM746660.1 1 20110102 175792 Pelteobagrus vachellii mitochondrion JN088164.1 1 20110930 52884 Peltigera malacea mitochondrion JN088165.1 1 20110930 161997 Peltigera membranacea mitochondrion AF217843.1 4 20050415 6687 Penaeus monodon mitochondrion HQ834451.1 2 20110216 175834 Penelopides panini mitochondrion HQ622809.1 2 20111005 36651 Penicillium digitatum strain pd01 mitochondrion AY347307.1 3 20050416 37727 Penicillium marneffei mitochonrion JN696111.1 1 20111101 60172 Penicillium solitum strain 20-01 mitochondrion HQ890946.1 1 20110302 118565 Pennahia argentata mitochondrion JF289176.1 1 20110324 103596 Peponocephala electra mitochondrion, isolate M6 JF289175.1 1 20110324 103596 Peponocephala electra mitochondrion, isolate P5 AJ639872.1 3 20061114 37737 Perameles gunnii mitochondrion (partial) DQ536430.1 2 20060719 163822 Percina macrolepida mitochondrion AP002928.1 2 20050416 143327 Percopsis transmontana mitochondrion FJ752431.1 4 20100615 114919 Perdix dauurica mitochondrion EF494507.1 2 20070711 168854 Perionyx excavatus mitochondrion AB371095.1 1 20090603 9472 Perodicticus potto mitochondrion AP009224.1 1 20090110 392925 Pervagor janthinosoma mitochondrion AY956355.1 2 20060607 50562 Petrobius brevistylis mitochondrion AP009609.1 1 20110111 112157 Petrocephalus microphthalmus mitochondrion AP009502.1 1 20110111 91712 Petrocephalus soudanensis mitochondrion U11880.1 9 20061114 7757 Petromyzon marinus mitochondrion AP004450.1 2 20050416 57847 Petroscirtes breviceps mitochondrion DQ409327.1 3 20081127 41426 Phacochoerus africanus mitochondrion EU427342.1 1 20081224 498930 Phaenacantha marcida mitochondrion GQ376531.1 2 20110908 37308 Phaeoceros laevis mitochondrion JN117275.1 1 20120102 33657 Phaeocystis antarctica strain CCMP1374 plastid EF067920.1 4 20070823 2850 Phaeodactylum tricornutum chloroplast HQ840789.1 2 20110411 2850 Phaeodactylum tricornutum mitochondrion AY728233.1 2 20040922 52110 Phaeognathus hubrichti mitochondrion EU053989.1 2 20080103 321614 Phaeosphaeria nodorum SN15 mitochondrion AP009043.1 2 20061114 57073 Phaethon rubricauda mitochondrion GQ338834.1 2 20101216 169999 Phakopsora meibomiae mitochondrion GQ332420.1 2 20101216 170000 Phakopsora pachyrhizi mitochondrion AY916449.1 3 20060113 308872 Phalaenopsis aphrodite subsp. formosana plastid EU523757.1 1 20080401 118624 Phalangium opilio mitochondrion JF440342.1 1 20110930 13634 Phalera flavescens mitochondrion AM292602.1 2 20071003 395376 Phallusia fumigata mitochondrion AM292320.1 1 20070917 59560 Phallusia mammillata mitochondrion DQ068952.1 3 20100303 329963 Phanogenia gracilis mitochondrion AJ639869.1 3 20061114 9293 Phascogale tapoatafa mitochondrion EF583817.1 1 20090422 419950 Phascolosoma esculenta mitochondrion DQ886273.1 9 20080530 3885 Phaseolus vulgaris cultivar Negro Jamapa chloroplast FJ752430.1 4 20100615 9054 Phasianus colchicus mitochondrion AB164626.1 1 20080401 9055 Phasianus versicolor mitochondrion DQ536431.1 2 20060719 71759 Phenacobius mirabilis mitochondrion AB054129.1 5 20090215 42486 Phenacogrammus interruptus mitochondrion JN031566.1 1 20110622 576137 Phialocephala subalpina mitochondrion, voucher UAMH:11012 AY630340.1 5 20061114 36667 Philaenus spumarius mitochondrion EU370925.1 1 20090101 491859 Phlaeoba albonema mitochondrion AB477467.1 3 20110114 590988 Phobaeticus serratipes mitochondrion AM181029.1 4 20070821 39088 Phoca fasciata mitochondrion AM181030.1 3 20070821 39089 Phoca groenlandica mitochondrion AM181031.1 3 20070821 39090 Phoca largha mitochondrion X63726.1 14 20050418 9720 Phoca vitulina mitochondrion AM181019.1 3 20070821 34888 Phocarctos hookeri mitochondrion AJ554063.1 4 20061114 9742 Phocoena phocoena mitochondrion FJ460596.1 1 20081216 575499 Phoenicolacerta kulzeri mitochondrion EF532932.1 3 20081127 435638 Phoenicopterus roseus mitochondrion GU811709.2 4 20100917 42345 Phoenix dactylifera chloroplast X76544.1 7 20000216 42345 Phoenix dactylifera mitochondrial plasmid JN375330.1 1 20111202 42345 Phoenix dactylifera mitochondrion AP004449.1 3 20100826 283025 Pholis crassispina mitochondrion AP009151.1 1 20110403 42663 Phoxinus eos mitochondrion AP009149.1 1 20110403 219678 Phoxinus percnurus mitochondrion AP009061.1 1 20061211 357291 Phoxinus percnurus mantschuricus mitochondrion AP009150.1 1 20110403 319226 Phoxinus percnurus sachalinensis mitochondrion AP009148.1 1 20110403 564076 Phoxinus steindachneri mitochondrion AP007280.1 2 20060419 169291 Phractolaemus ansorgii mitochondrion AB477460.1 2 20110114 590990 Phraortes illepidus mitochondrion AB477464.1 2 20110114 590991 Phraortes sp. Iriomote Island mitochondrion EU520641.1 1 20080401 507471 Phrynus sp. 1 SEM-2008 mitochondrion EU569764.1 2 20090607 339843 Phthonandria atrilineata mitochondrion HQ337796.1 1 20110627 38705 Phyllostachys edulis chloroplast HQ154129.1 1 20110627 886359 Phyllostachys nigra var. henonis chloroplast JN415113.1 1 20120102 524874 Phyllostachys propinqua chloroplast D29637.1 8 20070915 5791 Physarum polycephalum mitochondrial plasmid-like DNA AB027295.1 2 20010319 5791 Physarum polycephalum mitochondrion AB251495.1 8 20080501 3218 Physcomitrella patens mitochondrion AP005672.1 10 20081126 145481 Physcomitrella patens subsp. patens chloroplast GU945504.1 1 20100908 62778 Physemacris variolosa mitochondrion AJ277029.2 4 20061114 9755 Physeter catodon mitochondrion AP004409.1 2 20050416 181408 Physiculus japonicus mitochondrion EU427343.1 1 20081224 209986 Physopelta gutta mitochondrion HM590419.1 1 20110601 283009 Phytophthora andina mitochondrion AY894835.1 3 20100623 4787 Phytophthora infestans haplotype Ia mitochondrion AY898627.1 3 20100623 4787 Phytophthora infestans haplotype IIa mitochondrion AY898628.1 3 20100623 4787 Phytophthora infestans haplotype IIb mitochondrion U17009.2 10 20061114 4787 Phytophthora infestans mitochondrion HM590420.1 1 20110601 283007 Phytophthora ipomoeae mitochondrion HM590421.1 1 20110601 129356 Phytophthora mirabilis mitochondrion HM590418.1 1 20110601 129358 Phytophthora phaseoli mitochondrion DQ832718.1 1 20070501 164328 Phytophthora ramorum mitochondrion DQ832717.1 1 20070501 67593 Phytophthora sojae mitochondrion GQ222414.1 1 20100407 44414 Phytoseiulus persimilis mitochondrion HQ915867.1 1 20110302 34924 Pica pica mitochondrion AB480556.1 1 20110929 93926 Picea morrisonicola chloroplast EU998739.3 5 20090422 3332 Picea sitchensis chloroplast D31785.1 14 20080630 4907 Pichia canadensis mitochondrion JF411955.1 1 20111102 997267 Pielomastax zhengi mitochondrion EU597124.1 3 20091023 270461 Pieris melete mitochondrion HM156697.1 1 20110729 64459 Pieris rapae mitochondrion DQ355301.1 2 20061114 164648 Piliocolobus badius mitochondrion AP012019.1 1 20110629 255572 Pimelodus pictus mitochondrion EU998740.4 5 20110217 3339 Pinus contorta chloroplast EU998741.4 5 20110217 71632 Pinus gerardiana chloroplast AY228468.2 4 20070420 88728 Pinus Koraiensis chloroplast EU998742.4 5 20110217 3342 Pinus krempfii chloroplast EU998743.4 5 20110218 3343 Pinus lambertiana chloroplast EU998744.3 4 20090422 3344 Pinus longaeva chloroplast EU998745.4 5 20110218 151562 Pinus monophylla chloroplast EU998746.4 5 20110218 71643 Pinus nelsonii chloroplast D17510.1 19 20080418 3350 Pinus thunbergii chloroplast HM991332.1 1 20110527 191480 Pipa carvalhoi mitochondrion DQ887677.1 3 20061215 398741 Piper cenocladum chloroplast AB061528.1 2 20050414 105295 Pipistrellus abramus mitochondrion X55514.2 39 20050418 7612 Pisaster ochraceus mitochondrion EU239688.1 1 20080619 279652 Pista cristata mitochondrion HM029370.1 2 20101207 3888 Pisum sativum chloroplast DQ088274.1 3 20070801 6577 Placopecten magellanicus mitochondrion DQ889457.1 1 20070131 401704 Placozoan sp. BZ49 mitochondrion DQ889458.1 1 20070131 401705 Placozoan sp. BZ2423 mitochondrion DQ889456.1 1 20070131 401703 Placozoan sp. BZ10101 mitochondrion HQ269352.1 2 20110128 908212 Plakina crypta mitochondrion HQ269360.1 2 20110128 450361 Plakina jani mitochondrion, isolate DL036 HQ269351.1 2 20110128 908213 Plakina monolopha mitochondrion, isolate CB001 HQ269354.1 2 20110128 908215 Plakina sp. DVL-2010 mitochondrion HQ269356.1 2 20110128 764034 Plakina trilopha mitochondrion, isolate DL024 EU237487.1 3 20090707 295227 Plakortis angulospiculatus mitochondrion HQ269359.1 2 20110128 908214 Plakortis halichondrioides mitochondrion, isolate DL034 HQ269362.1 2 20110128 252963 Plakortis simplex mitochondrion, isolate DL048 AB558173.1 1 20101028 5821 Plasmodium berghei mitochondrion X95275.2 26 20050523 5833 Plasmodium falciparum complete gene map of plastid-like DNA (IR-A) X95276.2 27 20050526 5833 Plasmodium falciparum complete gene map of plastid-like DNA (IR-B) AJ276844.1 2 20001124 5833 Plasmodium falciparum mitochondrion DQ642846.1 2 20080614 137071 Plasmodium falciparum HB3 apicoplast DQ642845.1 2 20080614 137071 Plasmodium falciparum HB3 mitochondrion EF079654.2 3 20080403 31275 Plasmodium floridense mitochondrion AY722799.1 1 20050714 5857 Plasmodium fragile mitochondrion AB250690.1 3 20070116 5849 Plasmodium gallinaceum mitochondrion HM032052.1 2 20110309 52288 Plasmodium inui mitochondrion AB250415.1 3 20070116 111598 Plasmodium juxtanucleare mitochondrion AY722797.1 1 20050714 5850 Plasmodium knowlesi mitochondrion EF079653.2 3 20080403 27989 Plasmodium mexicanum mitochondrion AJ251941.1 2 20001124 5854 Plasmodium reichenowi mitochondrion AY733088.1 2 20050701 85471 Plasmodium relictum mitochondrion AY722798.1 1 20050714 5859 Plasmodium simium isolate Fonseca MRA-353 mitochondrion AY598074.1 1 20050714 5855 Plasmodium vivax mitochondrion JN788759.1 1 20120103 5855 Plasmodium vivax mitochondrion isolate Madagascar6b JN788760.1 1 20120103 5855 Plasmodium vivax mitochondrion isolate Madagascar8 JN788762.1 1 20120103 5855 Plasmodium vivax mitochondrion isolate Madagascar9b JN788766.1 1 20120103 5855 Plasmodium vivax mitochondrion isolate Tanzania JN788737.1 1 20120103 5855 Plasmodium vivax mitochondrion isolate Angola JN788738.1 1 20120103 5855 Plasmodium vivax mitochondrion isolate Madagascar1 JN788754.1 1 20120103 5855 Plasmodium vivax mitochondrion isolate Madagascar2 JN788756.1 1 20120103 5855 Plasmodium vivax mitochondrion isolate Madagascar3 JN788757.1 1 20120103 5855 Plasmodium vivax mitochondrion isolate Madagascar4 JN788758.1 1 20120103 5855 Plasmodium vivax mitochondrion isolate Madagascar6a JN788761.1 1 20120103 5855 Plasmodium vivax mitochondrion isolate Madagascar9 JN788739.1 1 20120103 5855 Plasmodium vivax mitochondrion isolate Madagascar10 JN788740.1 1 20120103 5855 Plasmodium vivax mitochondrion isolate Madagascar11 JN788741.1 1 20120103 5855 Plasmodium vivax mitochondrion isolate Madagascar12 JN788742.1 1 20120103 5855 Plasmodium vivax mitochondrion isolate Madagascar13a JN788743.1 1 20120103 5855 Plasmodium vivax mitochondrion isolate Madagascar13b JN788744.1 1 20120103 5855 Plasmodium vivax mitochondrion isolate Madagascar14a JN788745.1 1 20120103 5855 Plasmodium vivax mitochondrion isolate Madagascar14b JN788746.1 1 20120103 5855 Plasmodium vivax mitochondrion isolate Madagascar15a JN788747.1 1 20120103 5855 Plasmodium vivax mitochondrion isolate Madagascar15b JN788748.1 1 20120103 5855 Plasmodium vivax mitochondrion isolate Madagascar16 JN788749.1 1 20120103 5855 Plasmodium vivax mitochondrion isolate Madagascar17 JN788750.1 1 20120103 5855 Plasmodium vivax mitochondrion isolate Madagascar17a JN788751.1 1 20120103 5855 Plasmodium vivax mitochondrion isolate Madagascar18a JN788752.1 1 20120103 5855 Plasmodium vivax mitochondrion isolate Madagascar19a JN788753.1 1 20120103 5855 Plasmodium vivax mitochondrion isolate Madagascar19b JN788755.1 1 20120103 5855 Plasmodium vivax mitochondrion isolate Madagascar20 JN788763.1 1 20120103 5855 Plasmodium vivax mitochondrion isolate Niger JN788764.1 1 20120103 5855 Plasmodium vivax mitochondrion isolate Rwanda JN788765.1 1 20120103 5855 Plasmodium vivax mitochondrion isolate SaoTome JN788767.1 1 20120103 5855 Plasmodium vivax mitochondrion isolate Turkey1 JN788769.1 1 20120103 5855 Plasmodium vivax mitochondrion isolate Turkey2 JN788770.1 1 20120103 5855 Plasmodium vivax mitochondrion isolate Turkey3 JN788771.1 1 20120103 5855 Plasmodium vivax mitochondrion isolate Turkey5 JN788772.1 1 20120103 5855 Plasmodium vivax mitochondrion isolate Turkey6 JN788773.1 1 20120103 5855 Plasmodium vivax mitochondrion isolate Turkey7 JN788774.1 1 20120103 5855 Plasmodium vivax mitochondrion isolate Turkey8 JN788775.1 1 20120103 5855 Plasmodium vivax mitochondrion isolate Turkey9 JN788768.1 1 20120103 5855 Plasmodium vivax mitochondrion isolate Turkey10 M29000.1 7 20000304 5861 Plasmodium yoelii mitochondrion GQ199608.1 1 20090603 257867 Platalea leucorodia mitochondrion EF455490.1 1 20070406 259913 Platalea minor mitochondrion AJ554058.1 4 20061114 48752 Platanista minor mitochondrion DQ923116.1 3 20070227 4403 Platanus occidentalis plastid AP006825.1 1 20090822 75032 Platax orbicularis mitochondrion GU475132.1 1 20100309 637517 Platevindex mortoni mitochondrion EF424428.1 1 20080531 195632 Platichthys stellatus mitochondrion AF178678.1 4 20050415 6359 Platynereis dumerilii mitochondrion DQ256377.1 1 20060316 55544 Platysternon megacephalum mitochondrion AP004107.1 4 20061114 170202 Platytroctes apus mitochondrion AB047553.2 4 20050414 61084 Plecoglossus altivelis mitochondrion HM164052.1 1 20110501 61862 Plecotus auritus mitochondrion JN209841.1 1 20120202 27674 Plecotus rafinesquii mitochondrion DQ101270.1 2 20070317 160734 Plectropomus leopardus mitochondrion AY597334.1 2 20070321 195321 Plesiobatis daviesi mitochondrion AB016606.1 9 20080924 463521 Plestiodon egregius mitochondrion AY728232.1 2 20040922 141976 Plethodon cinereus mitochondrion AY728223.1 2 20040922 46761 Plethodon elongatus mitochondrion AY728222.1 2 20040922 154587 Plethodon petraeus mitochondrion JN392469.1 1 20120102 34499 Pleurobrachia bachei mitochondrion AF126285.1 1 19990628 5322 Pleurotus ostreatus mitochondrial plasmid mlp1 EF204913.1 3 20080306 5322 Pleurotus ostreatus mitochondrion FJ999996.2 2 20091029 280637 Pleurozia purpurea mitochondrion HQ586061.1 1 20101205 35206 Plocamiocolax pulvinata mitochondrion AP012020.1 1 20110629 909843 Plotosus japonicus mitochondrial DNA GU133622.1 1 20100121 4754 Pneumocystis carinii mitochondrion EF526302.1 1 20070912 46731 Pocillopora damicornis mitochondrion EF526303.1 1 20070912 367768 Pocillopora eydouxi mitochondrion FJ460597.1 1 20081216 64176 Podarcis muralis mitochondrion FJ460598.1 1 20081216 65484 Podarcis siculus mitochondrion GU592504.1 2 20110201 257846 Podoces hendersoni mitochondrion X55026.1 12 20081023 5145 Podospora anserina mitochondrion AY639939.1 2 20060829 50589 Podura aquatica mitochondrion, partial AB166795.1 3 20061114 103695 Pogona vitticeps mitochondrion FR751400.1 2 20110523 185739 Pollachius pollachius mitochondrion, isolate Pp1 FR751399.1 2 20110523 8060 Pollachius virens mitochondrion, isolate Pv1 AY456188.1 4 20061114 36137 Pollicipes polymerus mitochondrion AP011582.1 1 20110111 203438 Pollimyrus adspersus mitochondrial DNA AB266749.1 1 20090610 38934 Polychrus marmoratus mitochondrion JF825140.1 1 20110607 1036011 Polycyathus sp. MFL-2011 mitochondrion JF505509.1 1 20110926 1004784 Polylabris halichoeres mitochondrion AB034826.1 3 20050414 81385 Polymixia japonica mitochondrion AP002927.1 2 20050416 143326 Polymixia lowei mitochondrion AP004353.1 3 20101229 7913 Polyodon spathula mitochondrion AY458598.1 3 20050708 68449 Polypedates megacephalus mitochondrion EU417812.1 2 20091009 9059 Polyplectron bicalcaratum mitochondrion HM143926.1 1 20110331 764547 Polypterus ansorgii voucher NTNU LSP113 mitochondrion HM143927.1 1 20110331 764548 Polypterus bichir bichir voucher NTNU LSP084 mitochondrion HM143928.1 1 20110331 764549 Polypterus bichir lapradei voucher NTNU LSP116 mitochondrion HM143930.1 1 20110331 135584 Polypterus delhezi voucher NTNU LSP136 mitochondrion HM143931.1 1 20110331 348150 Polypterus endlicherii voucher NTNU LSP117 mitochondrion HM143929.1 1 20110331 764550 Polypterus endlicherii congicus voucher NTNU LSP111 mitochondrion HM143934.1 1 20110331 764552 Polypterus mokelembembe voucher NTNU LSP121 mitochondrion U62532.1 5 20050418 49895 Polypterus ornatipinnis mitochondrion HM143935.1 1 20110331 1088067 Polypterus palmas buettikoferi voucher NTNU LSP056 mitochondrion HM143936.1 1 20110331 764553 Polypterus palmas polli voucher NTNU LSP032 mitochondrion HM143937.1 1 20110331 27688 Polypterus retropinnis voucher NTNU LSP110 mitochondrion AP004352.1 3 20101229 178879 Polypterus senegalus senegalus mitochondrion HM143932.1 1 20110331 764556 Polypterus sp. golden dust mitochondrion HM143933.1 1 20110331 764555 Polypterus sp. Koliba mitochondrion HM143938.1 1 20110331 764557 Polypterus teugelsi voucher NTNU LSP082 mitochondrion HM143939.1 1 20110331 764558 Polypterus weeksii voucher NTNU LSP132 mitochondrion AY700145.1 3 20061114 13642 Polysphondylium pallidum mitochondrion AP011913.1 2 20110708 862797 Polyspina piosae mitochondrion FJ171325.1 2 20090327 279481 Polystoechotes punctatus mitochondrion EF645804.1 2 20081126 351368 Polytomella capuana mitochondrion GU108480.1 2 20100929 351366 Polytomella sp. SAG 63-10 chromosome 1 mitochondrion X97707.1 8 20080318 9601 Pongo abelii mitochondrion D38115.1 14 20061208 9600 Pongo pygmaeus mitochondrion AJ554060.1 4 20061114 48723 Pontoporia blainvillei mitochondrion AP008956.1 3 20070922 43335 Populus alba chloroplast EF489041.1 1 20070321 3694 Populus trichocarpa chloroplast AP006739.1 4 20061005 262771 Porichthys myriaster mitochondrion JF825142.1 1 20110607 627021 Porites okinawensis mitochondrion DQ643837.1 2 20060616 104760 Porites porites mitochondrion AP002935.1 2 20050416 143334 Poromitra oscitans mitochondrion U38804.1 5 20050417 2787 Porphyra purpurea chloroplast AF114794.1 6 20061114 2787 Porphyra purpurea mitochondrion EF532934.1 2 20080326 439704 Porphyrio hochstetteri mitochondrion AB093006.1 2 20050414 210409 Portunus trituberculatus mitochondrion AP011594.1 1 20120106 689653 Potamalosa richmondia mitochondrion GQ996416.1 2 20100319 145637 Potamopyrgus antipodarum mitochondrion GQ996415.1 2 20100319 268618 Potamopyrgus estuarinus mitochondrion AP011597.1 1 20120106 689628 Potamothrissa sp. AF3 mitochondrion AP011599.1 1 20120106 689629 Potamothrissa sp. Odzala mitochondrion AJ639873.1 4 20061121 9310 Potorous tridactylus mitochondrion DQ355299.1 2 20061114 78451 Presbytis melalophos mitochondrion DQ463747.1 2 20061130 37621 Priapulus caudatus mitochondrion EU877952.1 2 20081031 295936 Priasilpha obscura mitochondrion JN392459.1 2 20111202 300877 Prionailurus bengalensis euptilurus mitochondrion AP011609.1 1 20120106 691803 Pristigaster sp. Thailand-2009a mitochondrial DNA, almost complete JF414117.1 2 20110807 54126 Pristionchus pacificus strain PS312 California mitochondrion AB556947.1 1 20110110 507543 Pristomyrmex punctatus mitochondrion, country: Japan: Gifu, Kii-Nagashima GU386355.1 1 20110102 157668 Procapra przewalskii mitochondrion AB096865.1 3 20050414 9813 Procavia capensis mitochondrion AP010880.1 1 20090127 565081 Procetichthys kreffti mitochondrion JF293092.1 1 20110329 373033 Procolobus verus mitochondrion AB297804.1 1 20070316 9654 Procyon lotor mitochondrion AB462046.1 1 20110923 9654 Procyon lotor mitochondrion, specimen_voucher: personal:Tomoharu Tokutomi:NDMC-PL-C19021 AB462045.1 1 20110923 9654 Procyon lotor mitochondrion, specimen_voucher: personal:Tomoharu Tokutomi:NDMC-PL-C19023 AB462047.1 1 20110923 9654 Procyon lotor mitochondrion, specimen_voucher: personal:Tomoharu Tokutomi:NDMC-PL-HYO18005 AB462048.1 1 20110923 9654 Procyon lotor mitochondrion, specimen_voucher: personal:Tomoharu Tokutomi:NDMC-PL-R16192 AB462049.1 1 20110923 9654 Procyon lotor mitochondrion, specimen_voucher: personal:Tomoharu Tokutomi:NDMC-PL-W19093 EU082030.1 2 20090605 367866 Procypris rabaudi mitochondrion HM544128.1 1 20110830 34837 Proechimys longicaudatus mitochondrion, voucher MSB:Mamm:57192 FJ463038.1 3 20110922 575527 Proedromys liangshanensis mitochondrion AB286049.1 1 20080715 379532 Propithecus coquereli mitochondrion HQ184265.1 1 20110922 885932 Protantigius superans mitochondrion GU563431.1 1 20100721 42746 Proteromonas lacertae mitochondrion GQ368659.1 1 20090910 221568 Proteus anguinus mitochondrion AP011809.1 1 20110825 752537 Protoanguilla palau mitochondrion, except for D-loop EU526394.1 1 20081106 508445 Protohermes concolorus mitochondrion JN861746.1 1 20111113 560777 Protoplasa fitchii mitochondrion L42813.1 5 20061114 27779 Protopterus dolloi mitochondrion U02970.1 10 20061114 3111 Prototheca wickerhamii mitochondrion GU294758.1 1 20100111 614657 Prumna arctica mitochondrion HQ336405.1 2 20110210 3760 Prunus persica chloroplast HM049636.1 1 20120102 1088058 Przewalskium albirostris mitochondrion FJ424074.1 1 20090806 157325 Psacothea hilaris mitochondrion DQ080041.1 3 20060316 569598 Psammobates pardalis mitochondrion AP011067.1 1 20090822 316143 Psenes cyanophrys mitochondrion AY571339.1 3 20070311 61976 Psephurus gladius mitochondrion AP009226.1 1 20090110 392929 Pseudalutarius nasicornis mitochondrion AP009058.1 1 20061211 263870 Pseudaspius leptocephalus mitochondrion AY835431.1 3 20061114 160070 Pseudendoclonium akinetum chloroplast AY359242.1 4 20081001 160070 Pseudendoclonium akinetum mitochondrion HM991333.1 1 20110527 864177 Pseudhymenochirus merlini mitochondrion HM355585.1 2 20110922 78879 Pseudobagrus brevicorpus mitochondrion, voucher LEGO-F407 AB054127.1 5 20090215 78873 Pseudobagrus tokiensis mitochondrion AP009209.1 1 20090110 392903 Pseudobalistes flavimarginatus mitochondrion AY562127.1 4 20060216 205354 Pseudocarcinus gigas mitochondrion EU024483.1 1 20071119 58148 Pseudocellus pearsei mitochondrion AJ639870.1 3 20061114 9333 Pseudocheirus peregrinus mitochondrion (partial) HQ269357.1 2 20110128 61082 Pseudocorticium jarrei mitochondrion, isolate DL028 AP009310.1 2 20110302 418128 Pseudogobio esocinus mitochondrion FJ532059.1 2 20100602 157107 Pseudohynobius flavomaculatus mitochondrion FJ532058.1 2 20100602 581055 Pseudohynobius puxiongensis mitochondrion FJ532060.1 2 20100602 365029 Pseudohynobius shuichengensis mitochondrion FJ207537.1 1 20090428 59542 Pseudois nayaur mitochondrion JQ040802.1 1 20120111 112503 Pseudois schaeferi mitochondrion EU560728.1 1 20090202 98376 Pseudolabrus eoethinus mitochondrion AP006019.1 2 20081119 98377 Pseudolabrus sieboldi mitochondrion EU728579.1 3 20100421 427734 Pseudoleptodeira latifasciata mitochondrion FJ606784.1 1 20091231 476809 Pseudolestes mirabilis mitochondrion AP009225.1 1 20090110 392927 Pseudomonacanthus peroni mitochondrion EU305669.1 1 20101104 221128 Pseudomys chapmani mitochondrion HM535648.1 1 20100727 181119 Pseudopodoces humilis mitochondrion DQ640646.1 2 20060616 204379 Pseudopterogorgia bipinnata mitochondrion EU597300.1 1 20080822 497908 Pseudopungtungia nigra mitochondrion FJ515917.1 1 20110102 581200 Pseudopungtungia tenuicorpus mitochondrion JF802126.1 1 20110531 51549 Pseudorasbora parva mitochondrion, voucher SF0809001 AB239599.1 2 20090215 90751 Pseudorasbora pumila mitochondrion HM060332.1 2 20100708 82174 Pseudorca crassidens mitochondrion JF289173.1 1 20110324 82174 Pseudorca crassidens mitochondrion, isolate 92 JF289174.1 1 20110324 82174 Pseudorca crassidens mitochondrion, isolate 96 AB262447.2 2 20100421 118229 Pseudotrapelus sinaitus mitochondrion AY728220.1 2 20040922 134762 Pseudotriton ruber mitochondrion AB601120.1 1 20110929 71408 Pseudotsuga sinensis var. wilsoniana chloroplast DQ026436.1 1 20080906 327762 Psilorhynchus homaloptera mitochondrion AP011288.1 1 20110513 643345 Psilorhynchus sucatio mitochondrion AP004638.1 5 20060516 3240 Psilotum nudum chloroplast EF409976.2 2 20080127 423481 Pteragogus flagellifer mitochondrion HM535629.1 1 20100727 104588 Pteridium aquilinum subsp. aquilinum chloroplast AP004447.1 2 20050416 181466 Pterocaesio tile mitochondrion AF338709.2 4 20050527 8795 Pterocnemia pennata mitochondrion AY158678.1 4 20061114 37064 Pterodroma brevirostris mitochondrion DQ780882.1 4 20061220 390975 Pteroglossus azara flavirostris mitochondrion AY687866.1 7 20081224 285953 Pteronarcys princeps mitochondrion AB042770.1 3 20050414 126282 Pteropus dasymallus mitochondrion AF321050.1 3 20050415 94117 Pteropus scapulatus mitochondrion AP012021.1 1 20110629 909844 Pterygoplichthys disjunctivus mitochondrion HM222519.1 1 20110418 70216 Ptilidium pulcherrimum chloroplast EU237488.1 2 20090113 479640 Ptilocaulis walpersi mitochondrion AP009507.1 3 20091127 238220 Ptychochromoides katria mitochondrion JN861744.1 1 20111113 1111051 Ptychoptera sp. ATB-2011 mitochondrion FJ752429.1 4 20100615 9061 Pucrasia macrolopha mitochondrion JN999997.1 1 20111213 9696 Puma concolor mitochondrion EU332749.1 1 20101231 300318 Pungitius kaibarae mitochondrion AB445130.1 2 20090113 134920 Pungitius pungitius mitochondrion EU332748.1 1 20101231 497904 Pungitius sinensis mitochondrion AB239598.1 2 20090215 90753 Pungtungia herzi mitochondrion EU287909.1 1 20071205 27709 Puntius tetrazona mitochondrion AB238969.1 2 20090215 205135 Puntius ticto mitochondrion AB028237.1 4 20061114 96460 Pupa strigosa mitochondrion AM181033.1 3 20070821 693431 Pusa caspica mitochondrion AM181036.1 3 20070821 9718 Pusa hispida mitochondrion AM181034.1 3 20070821 9719 Pusa sibirica mitochondrion FJ493498.1 1 20090224 41880 Pycnococcus provasolii chloroplast GQ497137.1 2 20100315 41880 Pycnococcus provasolii mitochondrion GU475148.1 1 20100305 125283 Pycnonotus sinensis mitochondrion FJ378536.2 2 20100118 493818 Pycnonotus taivanus mitochondrion FJ809754.1 1 20091223 96932 Pyganodon grandis mitochondrion DQ355302.1 1 20060624 54133 Pygathrix nemaeus mitochondrion JF293096.1 1 20110329 54133 Pygathrix nemaeus mitochondrion AP012000.1 1 20110629 42514 Pygocentrus nattereri mitochondrion AJ277126.1 4 20061114 2885 Pylaiella littoralis mitochondrion AY345054.2 7 20090414 252582 Pyramidella dolabrata mitochondrion FJ493499.1 1 20090224 36894 Pyramimonas parkeae chloroplast AF452048.1 5 20061114 71223 Pyrocoelia rufa mitochondrion EF398270.1 2 20080331 423334 Pyrophorus divergens mitochondrion AP006715.1 2 20060418 2788 Pyropia yezoensis chloroplast GU138663.1 1 20100930 65071 Pythium ultimum culture-collection CBS:398.51 mitochondrion GU138662.1 3 20101015 65071 Pythium ultimum mitochondrion HM581978.1 1 20110701 621282 Python molurus molurus mitochondrion AB177878.1 3 20080924 51751 Python regius mitochondrion DQ659152.1 2 20080829 74932 Pyxidea mouhotii mitochondrion FJ809750.1 1 20091223 52372 Quadrula quadrula mitochondrion FJ432700.1 2 20090929 109965 Quasipaa spinosa mitochondrion FJ154956.1 1 20080910 141264 Rachycentron canadum mitochondrion FN313571.1 5 20110120 46012 Radopholus similis mitochondrion FJ611801.1 1 20100907 590134 Radoszkowskius oculata mitochondrion AP011222.1 1 20110513 75360 Raiamas guttatus mitochondrion AP010780.1 2 20110302 516811 Raiamas senegalensis mitochondrion AP010822.1 2 20100421 547198 Rallina eurizonoides sepiaria mitochondrion DQ343649.1 2 20081229 51846 Ramphotyphlops braminus mitochondrion FJ156750.1 1 20090831 556494 Ramulus hainanense mitochondrion AB477463.1 2 20110114 590987 Ramulus irregulariterdentatus mitochondrion AB511282.1 1 20100713 310659 Rana ishikawae mitochondrion AB043889.1 7 20061114 8409 Rana nigromaculata mitochondrion EF196679.1 1 20070330 109178 Rana plancyi mitochondrion AB245426.1 2 20091114 9870 Rangifer tarandus mitochondrion AJ419960.1 4 20061114 113097 Ranodon sibiricus mitochondrion DQ359689.1 4 20090311 334596 Ranunculus macranthus chloroplast AP006047.1 2 20060531 215407 Ranzania laevis mitochondrion EU170053.1 1 20080831 55521 Rapana venosa mitochondrion AP011430.1 1 20110513 432394 Rasbora cephalotaenia mitochondrion, except for D-loop AP011285.1 1 20110513 244133 Rasbora daniconius mitochondrion AP011432.1 1 20110513 244134 Rasbora vaterifloris mitochondrion EU555283.1 2 20100407 334878 Rastrelliger brachysoma mitochondrion EU273709.1 2 20100509 34854 Rattus exulans isolate RPNGYur 9Oct06 mitochondrion EU273710.1 2 20100509 34854 Rattus exulans mitochondrion GU570664.1 4 20110217 10119 Rattus fuscipes mitochondrion GU570659.1 4 20110217 10115 Rattus leucopus mitochondrion GU570661.1 4 20110217 472760 Rattus lutreolus mitochondrion X14848.1 72 20050418 10116 Rattus norvegicus mitochondrion strain wistar EU273708.1 2 20100509 349711 Rattus praetor mitochondrion EU273707.1 2 20100509 10117 Rattus rattus mitochondrion GU570665.1 4 20110217 10120 Rattus sordidus mitochondrion EU273712.1 2 20100509 35732 Rattus tanezumi mitochondrion GU570662.1 4 20110217 10121 Rattus tunneyi mitochondrion GU570663.1 4 20110217 10122 Rattus villosissimus mitochondrion AF007261.1 12 20061114 48483 Reclinomonas americana mitochondrion AM749130.1 1 20070723 111784 Reinhardtius hippoglossoides mitochondrion DQ159954.1 1 20071201 272940 Reishia clavigera mitochondrion AB079597.1 5 20100128 711330 Rena humilis mitochondrion EF206314.1 1 20070529 36989 Reticulitermes flavipes mitochondrion EF206320.1 1 20070529 93199 Reticulitermes hageni mitochondrion EF206315.1 2 20101013 127387 Reticulitermes santonensis mitochondrion EF206318.1 1 20070529 57123 Reticulitermes virginicus mitochondrion AP004108.1 4 20061114 170203 Retropinna retropinna mitochondrion FN908482.1 2 20110718 638968 Rhabdopleura compacta mitochondrion AB202078.1 3 20061114 210202 Rhacophorus schlegelii DQ888607.1 1 20070406 398797 Rhagophthalmus lufengensis mitochondrion AB267275.1 1 20070414 71225 Rhagophthalmus ohbai mitochondrion Y16884.3 7 20050418 8797 Rhea americana mitochondrion AY456252.1 3 20081216 194408 Rhinatrema bivittatum mitochondrion AP009210.1 1 20090110 245705 Rhinecanthus aculeatus mitochondrion AY605473.1 1 20040829 261503 Rhineura floridana mitochondrion voucher MVZ 233342 FJ905815.1 2 20090517 102233 Rhinoceros sondaicus mitochondrion X97336.1 8 20050418 9809 Rhinoceros unicornis mitochondrion HM147141.1 2 20101021 134994 Rhinochimaera pacifica mitochondrion JN392460.1 1 20111024 1077283 Rhinolophus ferrumequinum korai mitochondrion EU166918.1 1 20080930 472238 Rhinolophus formosae mitochondrion AF406806.1 4 20050415 169756 Rhinolophus monoceros mitochondrion AB061526.1 2 20050414 159859 Rhinolophus pumilus mitochondrion AP010844.1 2 20101229 391222 Rhinomuraena quaesita mitochondrion HM991334.1 1 20110527 43566 Rhinophrynus dorsalis mitochondrion HM125578.1 1 20110429 66062 Rhinopithecus avunculus mitochondrion JF293093.1 1 20110329 66062 Rhinopithecus avunculus mitochondrion HM125579.1 1 20110429 61621 Rhinopithecus bieti mitochondrion DQ355300.1 3 20061114 61622 Rhinopithecus roxellana mitochondrion AF081829.1 2 20050415 34632 Rhipicephalus sanguineus mitochondrion GQ413967.1 3 20110621 112168 Rhizanthella gardneri plastid FJ648425.1 2 20090618 4876 Rhizophagus intraradices mitochondrion, isolate FACE#494 HQ189519.1 1 20100923 588596 Rhizophagus irregularis strain DAOM-197198 mitochondrion AF404306.1 6 20061114 60187 Rhizophydium sp. 136 mitochondrion AY863212.1 3 20061114 64495 Rhizopus oryzae mitochondrion DQ640647.1 3 20061114 386104 Rhodactis sp. CASIZ 171755 mitochondrion DQ026430.1 1 20080906 75330 Rhodeus ocellatus mitochondrion AB070205.1 2 20090215 80800 Rhodeus ocellatus kurumeus mitochondrion EF483934.1 1 20091231 112179 Rhodeus suigensis mitochondrion DQ155662.1 2 20070125 339858 Rhodeus uyekii mitochondrion AF288090.1 4 20061114 52970 Rhodomonas salina mitochondrion EF508371.1 1 20070617 52970 Rhodomonas salina strain CCMP1319 chloroplast FJ859903.1 3 20091027 272071 Rhopaea magnicornis mitochondrion JN619347.1 1 20111024 1094772 Rhopalocaulis grandidieri mitochondrion GQ387649.1 3 20090925 608481 Rhopalomyia pomum mitochondrion AP004454.1 2 20050416 86220 Rhyacichthys aspro mitochondrion AY728219.1 2 20040922 291264 Rhyacotriton variegatus mitochondrion AB282853.1 1 20100218 412649 Rhynchactis macrothrix mitochondrion AP009147.1 1 20110403 219677 Rhynchocypris lagowskii mitochondrion AJ508399.1 5 20061121 33559 Rhyncholestes raphanurus mitochondrion AP011064.1 1 20090822 270585 Rhynchopelates oxyrhynchus mitochondrion JN415114.1 1 20120102 110453 Rhynchoryza subulata plastid EF532933.1 2 20080326 54386 Rhynochetos jubatus mitochondrion JF937588.1 1 20110803 3988 Ricinus communis chloroplast, cultivar Hale HQ874649.1 2 20110731 3988 Ricinus communis mitochondrion DQ640648.1 3 20061114 165100 Ricordea florida mitochondrion EU427344.1 1 20081224 329032 Riptortus pedestris mitochondrion AP010846.1 2 20101229 118149 Robinsia catherinae mitochondrion AY083457.1 6 20061114 189538 Roboastra europaea mitochondrion EF154459.1 2 20061212 13658 Romanomermis culicivorax mitochondrion EF175764.1 1 20061219 416168 Romanomermis iyengari mitochondrion EF175763.1 1 20061219 416167 Romanomermis nielseni mitochondrion AP002937.1 2 20050416 88713 Rondeletia loricata mitochondrion GQ304898.1 1 20091129 231624 Rotaria rotatoria mitochondrion AB205183.1 2 20071005 9407 Rousettus aegyptiacus mitochondrion HM138200.1 1 20101031 1088090 Rucervus eldi mitochondrion AP009227.1 1 20090110 392931 Rudarius ercodes mitochondrion FJ493469.1 1 20090113 587370 Rudbeckia flower distortion virus isolate AB065375.1 2 20050414 129788 Ruditapes philippinarum mitochondrion FJ207538.1 1 20090428 72545 Rupicapra pyrenaica mitochondrion FJ207539.1 1 20090428 34869 Rupicapra rupicapra mitochondrion DQ989636.3 3 20080926 399782 Rusa unicolor swinhoei mitochondrion EF583824.1 2 20071005 441267 Ruspolia dubia mitochondrion GU183364.1 1 20120102 204942 Sacalia bealei mitochondrion EF088646.1 2 20090107 74934 Sacalia quadriocellata mitochondrion GU320209.1 1 20120102 74934 Sacalia quadriocellata mitochondrion AP011498.1 1 20091104 88154 Saccharina angustata mitochondrion AP011499.1 1 20091104 416835 Saccharina coriacea mitochondrion AP011496.1 1 20091104 416837 Saccharina diabolica mitochondrion AP011493.1 1 20091104 88149 Saccharina japonica mitochondrion JF937591.1 1 20110621 1041932 Saccharina japonica x latissima mitochondrion AP011497.1 1 20091104 416839 Saccharina longipedalis mitochondrion AP011495.1 1 20091104 416842 Saccharina ochotensis mitochondrion AP011494.1 1 20091104 88150 Saccharina religiosa mitochondrion AJ011856.1 8 20090630 4932 Saccharomyces cerevisiae mitochondrion AP012028.1 1 20110911 721032 Saccharomyces cerevisiae Kyokai no. 7 mitochondrial EU004203.1 2 20070805 307796 Saccharomyces cerevisiae YJM789 mitochondrion EU852811.1 1 20090306 520522 Saccharomyces pastorianus Weihenstephan 34/70 mitochondrion AP006714.1 4 20100210 717233 Saccharum hybrid cultivar NCo 310 chloroplast AE009947.2 6 20100308 193079 Saccharum hybrid cultivar SP80-3280 chloroplast AY336131.1 2 20061114 10224 Saccoglossus kowalevskii mitochondrion AB047825.1 4 20101229 136490 Saccopharynx lavenbergi mitochondrion FJ841968.1 1 20100401 157729 Saccostrea mordax mitochondrion AP009495.1 1 20080620 319782 Sagamichthys abei mitochondrion AP011547.1 1 20100205 52900 Sagitta enflata mitochondrion HQ644339.1 1 20110531 39432 Saimiri boliviensis boliviensis mitochondrion HQ644340.1 1 20110531 495297 Saimiri boliviensis peruviensis mitochondrion HQ644335.1 1 20110531 942008 Saimiri oerstedii citrinellus mitochondrion HQ644337.1 1 20110531 867380 Saimiri oerstedii oerstedii mitochondrion AB371091.1 1 20090603 9521 Saimiri sciureus mitochondrion HQ644338.1 1 20110531 495300 Saimiri sciureus macrodon mitochondrion HQ644334.1 1 20110531 190117 Saimiri sciureus sciureus mitochondrion DQ333814.1 1 20060511 288315 Salamandrella keyserlingii mitochondrion AP004109.1 4 20061114 137522 Salangichthys microdon mitochondrion AP006231.1 4 20050827 221867 Salanx ariakensis mitochondrion AP004451.1 2 20050416 181472 Salarias fasciatus mitochondrion EU427345.1 1 20081224 498931 Saldula arsenjevi mitochondrion JN620539.1 1 20111024 981055 Salinator rhamphidia mitochondrion U12143.1 10 20061114 8030 Salmo salar mitochondrion AM910409.1 3 20071201 227976 Salmo trutta trutta mitochondrion AP011223.1 1 20110513 497986 Salmostoma bacaila mitochondrion AF154851.1 6 20061114 8036 Salvelinus alpinus mitochondrion AF154850.1 6 20061114 8038 Salvelinus fontinalis mitochondrion JN215366.1 1 20111225 30247 Samia cynthia ricini mitochondrion AY534144.1 4 20061114 4770 Saprolegnia ferax strain ATCC 36051 mitochondrion AB054124.1 5 20090215 149978 Sarcocheilichthys variegatus microoculus mitochondrion AP009233.1 1 20070612 27697 Sardina pilchardus mitochondrion AP009143.1 1 20070612 196072 Sardinella maderensis mitochondrion AP011605.1 1 20120106 691799 Sardinella sp. Madagascar-2009a mitochondrion AB032554.1 4 20101229 41697 Sardinops melanostictus mitochondrion AP004432.1 2 20050416 181438 Sargocentron rubrum mitochondrion JF894132.1 1 20110531 50613 Sarotherodon melanotheron mitochondrion AP011824.1 1 20100603 461137 Sasakia charonda mitochondrion AP011825.1 1 20100603 765311 Sasakia charonda kuriyamaensis mitochondrion EF622227.1 2 20080422 37777 Saturnia boisduvalii mitochondrion AP002920.1 2 20050416 143315 Saurida undosquamis mitochondrion DQ825686.1 1 20070127 328566 Savalia savaglia mitochondrion AP004441.1 2 20050416 181455 Scalicus amiscus mitochondrion AP004354.1 3 20101229 178880 Scaphirhynchus cf. albus mitochondrion FJ619271.1 1 20090123 242802 Scarus forsteni mitochondrion FJ449707.1 1 20081229 242806 Scarus ghobban mitochondrion FJ227899.1 1 20081005 247628 Scarus rubroviolaceus mitochondrion FJ595020.1 1 20090113 247629 Scarus schlegeli mitochondrion AB079242.1 4 20080924 8519 Sceloporus occidentalis mitochondrion X17375.2 12 20061114 3088 Scenedesmus obliquus mitochondrion AF204057.1 5 20061114 3088 Scenedesmus obliquus strain UTEX 78 mitochondrion DQ396875.1 4 20081126 3088 Scenedesmus obliquus strain UTEX 393 chloroplast GQ491031.1 2 20100121 670319 Schistocerca gregaria gregaria mitochondrion DQ157222.2 2 20060528 6185 Schistosoma haematobium mitochondrion AF215860.1 4 20050415 6182 Schistosoma japonicum mitochondrion coding region HM120842.1 1 20120102 6182 Schistosoma japonicum mitochondrion isolate SJHWM24 HM120845.1 1 20120102 6182 Schistosoma japonicum mitochondrion isolate SJHYF8 HM120843.1 1 20120102 6182 Schistosoma japonicum mitochondrion isolate SJJWM32 HM120844.1 1 20120102 6182 Schistosoma japonicum mitochondrion isolate SJJYF25 HM120846.1 1 20120102 6182 Schistosoma japonicum mitochondrion isolate SJSXM24 HM120848.1 1 20120102 6182 Schistosoma japonicum mitochondrion isolate SJYEIIF10 HM120847.1 1 20120102 6182 Schistosoma japonicum mitochondrion isolate SJYEIIm10 HM120841.1 1 20120102 6182 Schistosoma japonicum mitochondrion isolate SJZJM6 HE601612.1 2 20111014 6183 Schistosoma mansoni strain Puerto Rico mitochondrion AF216698.1 3 20050415 6183 Schistosoma mansoni mitochondrion AF217449.1 5 20050415 38744 Schistosoma mekongi mitochondrion DQ157223.1 1 20060509 6189 Schistosoma spindale mitochondrion AB242172.1 2 20090215 357288 Schistura balteata mitochondrion AY531391.1 3 20061114 13262 Schizaphis graminum mitochondrion AF402141.1 7 20061114 5334 Schizophyllum commune mitochondrion AF547983.1 6 20061114 4897 Schizosaccharomyces japonicus mitochondrion AF275271.2 14 20090123 4899 Schizosaccharomyces octosporus mitochondrion X54421.1 16 20111221 4896 Schizosaccharomyces pombe mitochondrion AP012003.1 1 20110629 243726 Sciades seemanni mitochondrial DNA AJ238588.1 3 20061114 55149 Sciurus vulgaris mitochondrion GU047879.1 4 20120102 285277 Scleronephthya gracillimum mitochondrion DQ023143.1 3 20070321 113540 Scleropages formosus mitochondrion DQ241798.1 3 20061114 253126 Sclerophasma paresisense mitochondrion AP009228.1 1 20090110 392933 Scobinichthys granulatus mitochondrion AY456253.1 5 20081224 261001 Scolecomorphus vittatus mitochondrion AB488407.1 2 20100128 29150 Scomber australasicus mitochondrion AB488406.1 2 20100128 338315 Scomber colias mitochondrion AB488405.1 2 20100128 13676 Scomber japonicus mitochondrion AB120717.1 5 20071205 13677 Scomber scombrus mitochondrion DQ536428.1 2 20060719 13679 Scomberomorus cavalla mitochondrion GU109281.1 1 20111130 321164 Scomberomorus niphonius mitochondrion AP002934.1 2 20050416 143333 Scopelogadus mizolepis mitochondrion EU419747.1 1 20090830 52904 Scophthalmus maximus mitochondrion AP011063.1 1 20090822 163141 Scorpis lineolata mitochondrion AJ507061.2 3 20050415 29022 Scutigera coleoptrata mitochondrion DQ666065.1 2 20070922 388540 Scutigerella causeyae mitochondrion Y16067.1 3 20050418 7830 Scyliorhinus canicula mitochondrion FJ827760.1 1 20090331 85551 Scylla olivacea mitochondrion FJ827761.1 1 20090331 85552 Scylla paramamosain mitochondrion FJ827758.1 1 20090331 6761 Scylla serrata mitochondrion HM590866.1 1 20110812 6761 Scylla serrata mitochondrion, strain Surathani FJ827759.1 1 20090331 85553 Scylla tranquebarica mitochondrion AY491978.1 4 20070523 214486 Sebastes schlegelii mitochondrion GU452728.1 2 20110719 41446 Sebastiscus marmoratus mitochondrion HM173080.1 2 20110525 88036 Selaginella moellendorffii chloroplast FJ755183.1 2 20091023 88036 Selaginella moellendorffii plastid AB197035.2 6 20070420 307165 Selaginella uncinata chloroplast AP012226.1 1 20111202 1052875 Semirossia patagonica mitochondrion DQ355297.1 2 20061114 88029 Semnopithecus entellus mitochondrion AB266516.1 2 20070724 31210 Sepia esculenta mitochondrion AB240155.1 2 20061114 6610 Sepia officinalis mitochondrion AB240154.1 2 20061114 34570 Sepioteuthis lessoniana mitochondrion EF633601.2 2 20080318 446912 Seriatopora caliendrum mitochondrion EF633600.2 2 20080318 51070 Seriatopora hystrix mitochondrion AP010857.1 2 20101229 182440 Serrivomer beanii mitochondrion AP007250.1 3 20110119 290102 Serrivomer sector mitochondrion JN039362.1 1 20110622 492764 Sesamia inferens mitochondrion JN637766.1 2 20111214 4182 Sesamum indicum chloroplast GU138699.1 1 20100624 48799 Setaria digitata mitochondrion AP011292.1 1 20110513 516038 Sewellia lineolata mitochondrion HQ008865.1 1 20100907 52224 Shinisaurus crocodilurus mitochondrion EU420129.1 1 20080619 480484 Shinkaia crosnieri mitochondrion FJ859905.1 3 20091027 173823 Sialis hamata mitochondrion EU728583.1 3 20100421 211651 Sibon nebulatus mitochondrion JN211315.1 1 20111206 1070323 Sibynophis collaris mitochondrion DQ643838.1 3 20071128 214988 Siderastrea radians mitochondrion EF025185.1 1 20070606 225757 Siganus fuscescens mitochondrion AP006031.1 1 20090822 215396 Siganus unimaculatus mitochondrion AB016274.1 7 20100826 48457 Sigmops gracilis mitochondrion JF715054.1 1 20120116 39875 Silene conica chloroplast JF715055.1 1 20120116 37657 Silene latifolia chloroplast HM562727.1 3 20101216 37657 Silene latifolia mitochondrion JF715056.1 1 20120116 39899 Silene noctiflora chloroplast JF715057.1 1 20120116 42043 Silene vulgaris chloroplast JQ048935.1 1 20120116 435225 Sillago sihama mitochondrion AP012022.1 1 20110629 30991 Silurus asotus mitochondrion AM398435.2 39 20110404 94993 Silurus glanis mitochondrion JF895472.1 1 20110606 395014 Silurus lanzhouensis mitochondrion HM746661.1 1 20110102 175797 Silurus meridionalis mitochondrion HQ907992.1 1 20120131 175797 Silurus meridionalis mitochondrion AP010849.1 3 20110119 189493 Simenchelys parasitica mitochondrion DQ866050.1 1 20070104 290412 Simosyrphus grandicornis mitochondrion HQ283344.1 1 20110318 1069815 Sinanodonta woodiana isolate AW19 mitochondrion HQ283345.1 1 20110318 1069815 Sinanodonta woodiana isolate AW22 mitochondrion HQ283347.1 1 20110318 1069815 Sinanodonta woodiana isolate AW123 mitochondrion HQ283346.1 1 20110318 1069815 Sinanodonta woodiana isolate AW124 mitochondrion HQ283348.1 1 20110318 1069815 Sinanodonta woodiana isolate AW125 mitochondrion HQ199311.1 2 20111014 289455 Sinentomon erythranum mitochondrion JF972568.1 1 20110621 119488 Siniperca chuatsi mitochondrion JN378751.1 1 20110825 214812 Siniperca knerii mitochondrion, isolate DYG JQ010986.1 1 20120102 228252 Siniperca scherzeri from China: Dongting Lake mitochondrion JQ010987.1 1 20120102 228252 Siniperca scherzeri from China: Lijiang River mitochondrion JQ010985.1 1 20120102 228252 Siniperca scherzeri from China: Poyang Lake mitochondrion JQ010988.1 1 20120102 228252 Siniperca scherzeri from China: Xiang River mitochondrion JN084101.1 1 20110714 228252 Siniperca scherzeri mitochondrion, isolate BG FJ984568.1 2 20100702 304914 Sinocyclocheilus altishoulderus mitochondrion GQ148557.1 2 20100702 75366 Sinocyclocheilus grahami mitochondrion FJ605359.1 1 20090123 241472 Sinogastromyzon puliensis mitochondrion EU880278.1 1 20080722 98310 Sinonovacula constricta mitochondrion FJ606783.1 1 20091231 590132 Siphlonurus immanis mitochondrion JN627205.1 1 20111024 1087063 Siphonaria gigas mitochondrion AY345049.2 6 20090414 57642 Siphonaria pectinata mitochondrion AY342055.1 2 20050416 203167 Siphonodentalium lobatum mitochondrion AY954506.1 2 20061114 320579 Siphonops annulatus mitochondrion FJ422961.1 2 20090130 6446 Sipunculus nudus mitochondrion FJ360694.1 2 20100813 568780 Sivaloka damnosus mitochondrion AB282827.1 1 20100218 412661 Sladenia gardineri mitochondrion AB079613.1 5 20100920 885424 Smaug warreni mitochondrion AY795974.1 2 20060302 9301 Sminthopsis crassicaudata mitochondrion AJ639867.1 4 20061121 90758 Sminthopsis douglasi mitochondrion (partial) EU016192.1 1 20080331 109609 Sminthurus viridis mitochondrion AF090340.1 5 20050415 81930 Smithornis sharpei mitochondrion AY863213.1 3 20061114 4889 Smittium culisetae mitochondrion DQ347958.1 2 20061114 147425 Solanum bulbocastanum cultivar PT29 chloroplast AM087200.3 6 20070626 4081 Solanum lycopersicum chloroplast DQ347959.1 2 20061114 4081 Solanum lycopersicum cultivar LA3023 chloroplast DQ231562.1 5 20070110 4113 Solanum tuberosum chloroplast DQ386163.2 4 20091027 4113 Solanum tuberosum cultivar Desiree chloroplast JF772170.1 1 20110710 4113 Solanum tuberosum isolate DM1-3-516-R44 chloroplast JF772171.1 1 20110710 4113 Solanum tuberosum isolate RH89-039-16 chloroplast AB270760.1 3 20070424 28829 Solea senegalensis mitochondrion HQ703012.1 1 20120102 165599 Solen grandis mitochondrion HQ215537.1 1 20101031 121131 Solenopsis geminata mitochondrion HQ215538.1 1 20101031 13686 Solenopsis invicta mitochondrion HQ215539.1 1 20101031 30203 Solenopsis richteri mitochondrion AB277725.1 2 20080116 270527 Solenostomus cyanopterus mitochondrion AB061527.1 2 20050414 62275 Sorex unguiculatus mitochondrion EF115542.1 1 20061208 4558 Sorghum bicolor cultivar BTx623 chloroplast DQ984518.1 4 20061212 4558 Sorghum bicolor mitochondrion EU557091.1 1 20090203 103600 Sousa chinensis mitochondrion AY545549.1 2 20050416 52888 Spadella cephaloptera mitochondrion HM544133.1 1 20110830 61880 Spalacopus cyanus mitochondrion, voucher DG657 JN571137.1 1 20111010 164324 Spalax carmeli mitochondrion, isolate 1404 FJ387020.1 1 20100627 314331 Spathius agrili mitochondrion AY456190.1 4 20061114 84346 Speleonectes tulumensis mitochondrion EU877950.1 2 20081031 546487 Sphaerius sp. BT0074 mitochondrion AF534390.1 4 20050415 8508 Sphenodon punctatus mitochondrion GU176342.1 1 20100713 696090 Sphenophorus sp. BYU-CO246 mitochondrion AP011915.1 2 20110708 168377 Sphoeroides annulatus mitochondrion AP006745.1 3 20090227 229059 Sphoeroides pachygaster mitochondrion AP011914.1 2 20110708 862788 Sphoeroides parvus mitochondrion AP011916.1 2 20110708 722567 Sphoeroides testudineus mitochondrion AP009164.1 2 20070920 98823 Spicara maena mitochondrion AM711898.1 4 20080403 30552 Spilogale putorius mitochondrion HM204705.1 3 20110719 768146 Spilonota lechriaspis mitochondrion JN191388.1 1 20110731 208451 Spilornis cheela mitochondrion AB445128.1 2 20090113 206126 Spinachia spinachia mitochondrion AJ400848.1 10 20061114 3562 Spinacia oleracea chloroplast HQ184266.1 1 20110922 885001 Spindasis takanonis mitochondrion JN160603.1 2 20110927 29656 Spirodela polyrhiza strain 7498 chloroplast AB374543.1 2 20081214 99802 Spirometra erinaceieuropaei mitochondrion AF404303.1 6 20061114 109760 Spizellomyces punctatus mitochondrial chromosome 1 AF404304.1 3 20060228 109760 Spizellomyces punctatus mitochondrial chromosome 2 AF404305.1 3 20060228 109760 Spizellomyces punctatus mitochondrial chromosome 3 AB568599.1 1 20110802 29908 Sporothrix schenckii mitochondrion, strain: ATCC 10268 AB568600.1 1 20110802 29908 Sporothrix schenckii mitochondrion, strain: KMU2052 AP009144.1 1 20070612 373251 Spratelloides delicatulus mitochondrion AP009145.1 1 20070612 365052 Spratelloides gracilis mitochondrion AP011608.1 1 20120106 691801 Sprattus antipodum mitochondrion AP011607.1 1 20120106 691800 Sprattus muelleri mitochondrion AP009234.1 1 20070612 196075 Sprattus sprattus mitochondrion Y18134.1 2 20050418 7797 Squalus acanthias mitochondrion DQ191684.1 1 20050921 84350 Squilla empusa mitochondrion AY639936.1 3 20060829 280675 Squilla mantis mitochondrion AY958085.1 4 20081216 102822 Staurastrum punctulatum chloroplast EU935607.1 3 20081224 52000 Steganacarus magnus mitochondrion AY591323.1 4 20060309 34508 Steinernema carpocapsae mitochondrion EF195384.1 2 20081229 436911 Steller sea lion vesivirus AP010858.2 3 20110427 87100 Stemonidium hypomelas mitochondrion EU557096.1 1 20090203 9735 Stenella attenuata mitochondrion EU557097.1 1 20090203 9737 Stenella coeruleoalba mitochondrion JN100019.1 2 20120119 1085627 Stenopirates sp. HL-2011 mitochondrion AP002952.1 2 20050416 143348 Stephanolepis cirrhifer mitochondrion AY728212.1 2 20040922 291263 Stereochilus marginatus mitochondrion EU660576.1 4 20101130 34553 Sthenoteuthis oualaniensis mitochondrion HQ000092.1 3 20111026 566292 Stichopus horrens mitochondrion HM853683.2 2 20110227 871532 Stichopus sp. SF-2010 mitochondrion EU826088.1 1 20090630 319428 Stictopleurus subviridis mitochondrion DQ630521.1 5 20081126 55999 Stigeoclonium helveticum strain UTEX 441 chloroplast AP011583.1 1 20110111 687780 Stomatorhinus sp. CU 6164 mitochondrial DNA DQ520859.1 1 20060513 382540 Strelkovimermis spiculatus haplotype large mitochondrion DQ520860.1 1 20060513 382540 Strelkovimermis spiculatus haplotype small mitochondrion AY309456.1 4 20050416 57251 Strigops habroptilus mitochondrion AM900391.1 2 20071108 7671 Strongylocentrotus droebachiensis mitochondrion AM900392.1 2 20071108 7670 Strongylocentrotus pallidus mitochondrion X12631.1 74 20050418 7668 Strongylocentrotus purpuratus mitochondrion AJ558163.1 2 20061114 6248 Strongyloides stercoralis mitochondrion GQ888717.2 2 20100421 40348 Strongylus vulgaris mitochondrion AF338715.1 4 20050527 8801 Struthio camelus mitochondrion HQ896037.1 1 20110313 36269 Sturnus cineraceus mitochondrion HM859900.1 1 20100816 451428 Sturnus sericeus mitochondrion HQ915864.1 1 20110302 279927 Sturnus tristis mitochondrion AM292601.1 1 20091127 7726 Styela plicata mitochondrion GQ927176.2 3 20100325 679428 Stylochyrus rarior mitochondrion EU400214.1 1 20080824 50429 Stylophora pistillata mitochondrion AM690374.1 1 20080320 55567 Suberites domuncula mitochondrion JN627206.1 1 20111024 145427 Succinea putris mitochondrion AP004456.1 3 20100826 181478 Sufflamen fraenatum mitochondrion AP006232.1 3 20050826 221869 Sundasalanx mekongensis mitochondrion AP011590.1 1 20120106 689624 Sundasalanx praecox mitochondrion AP011591.1 1 20120106 689625 Sundasalanx sp. Chao Phraya mitochondrion AJ002189.1 7 20090630 9823 Sus scrofa mitochondrion AP003428.1 1 20090224 9825 Sus scrofa domesticus mitochondrion GU147934.1 1 20101102 310261 Sus scrofa taiwanensis mitochondrion AM889140.1 2 20080221 48155 Sylvia atricapilla mitochondrion AM889141.1 2 20080221 216226 Sylvia crassirostris mitochondrion JN861752.1 1 20111113 52754 Sylvicola fenestralis mitochondrion AB504750.1 1 20100407 9590 Symphalangus syndactylus mitochondrion EF576853.1 1 20081216 390856 Symphylella sp. YG-2006 mitochondrion HM237350.1 1 20101015 84072 Symsagittifera roscoffensis mitochondrion AP002977.2 4 20101229 118154 Synaphobranchus kaupii mitochondrion GU002153.1 2 20100527 191585 Synedra acus mitochondrion JQ088178.1 3 20120120 191585 Synedra acus chloroplast GQ888718.1 2 20101124 70241 Syngamus trachea mitochondrion AP012023.1 1 20110629 270531 Synodontis schoutedeni mitochondrion AY524977.1 1 20050731 261076 Synodus variegatus mitochondrion AP009042.1 2 20061114 28708 Synthliboramphus antiquus mitochondrion FJ546412.1 2 20100317 38588 Syntrichia ruralis chloroplast AB164624.1 1 20080401 9063 Syrmaticus ellioti mitochondrion AB164625.1 1 20080401 9064 Syrmaticus humiae mitochondrion AB164623.1 1 20080401 9066 Syrmaticus reevesii mitochondrion AB164622.1 1 20080401 265498 Syrmaticus soemmerringi ijimae mitochondrion EF532936.1 2 20080326 342690 Tachybaptus novaehollandiae mitochondrion AJ303116.1 7 20061114 9261 Tachyglossus aculeatus mitochondrion FJ860267.1 1 20090413 6853 Tachypleus tridentatus mitochondrion AF445798.2 5 20060519 60517 Taenia asiatica mitochondrion AF216699.1 2 20010118 6207 Taenia crassiceps mitochondrion GQ228819.1 2 20100816 85431 Taenia hydatigena mitochondrion GQ228818.1 2 20100816 94034 Taenia multiceps mitochondrion GU569096.1 2 20100816 85432 Taenia pisiformis mitochondrion AY684274.1 1 20071029 6206 Taenia saginata mitochondrion AB086256.1 3 20061114 6204 Taenia solium mitochondrion FJ597547.1 2 20110412 6205 Taenia taeniaeformis mitochondrion DQ422742.1 2 20061123 59729 Taeniopygia guttata mitochondrion AP009534.1 2 20090227 176185 Takifugu chinensis mitochondrion AP009525.1 2 20090227 478957 Takifugu chrysops mitochondrion AP009540.1 2 20090227 277992 Takifugu exascurus mitochondrion GQ409967.1 1 20090810 301270 Takifugu fasciatus mitochondrion AP009526.1 2 20090227 204815 Takifugu niphobles mitochondrion AP009535.1 2 20090227 204816 Takifugu oblongus mitochondrion AP009527.1 2 20090227 309541 Takifugu obscurus mitochondrion AP009536.1 2 20090227 433686 Takifugu ocellatus mitochondrion AP009528.1 2 20090227 98921 Takifugu pardalis mitochondrion AP009539.1 2 20090227 176188 Takifugu poecilonotus mitochondrion AP009529.1 2 20090227 176187 Takifugu porphyreus mitochondrion AJ421455.1 3 20061114 31033 Takifugu rubripes mitochondrion AP009531.1 2 20090227 277993 Takifugu snyderi mitochondrion AP009530.1 2 20090227 229060 Takifugu stictonotus mitochondrion AP009532.1 2 20090227 177060 Takifugu vermicularis mitochondrion AP009533.1 2 20090227 119041 Takifugu xanthopterus mitochondrion AB080237.1 2 20080924 118850 Takydromus tachydromoides mitochondrion AP009587.1 1 20091130 492049 Talismania bifurcata mitochondrion Y19192.1 5 20061114 9375 Talpa europaea mitochondrion AJ421450.1 4 20061114 48850 Tamandua tetradactyla mitochondrion DQ241797.1 2 20061114 267124 Tamolanica tamolana mitochondrion AP011397.1 1 20110513 38762 Tanichthys albonubes mitochondrion GU370074.1 2 20100908 88027 Tanystylum orbiculare mitochondrion EU443255.1 1 20081216 8569 Tarentola mauritanica mitochondrion AJ639868.1 3 20061114 38632 Tarsipes rostratus mitochondrion (partial) AF348159.1 4 20061114 9477 Tarsius bancanus mitochondrion AB371090.1 1 20090603 9478 Tarsius syrichta mitochondrion HM106330.1 1 20110501 30554 Taxidea taxus voucher ROM111450 mitochondrion HM563681.1 1 20100802 202796 Teinopalpus aureus mitochondrion GQ888720.1 1 20100213 45464 Teladorsagia circumcincta mitochondrion EU557269.1 2 20090107 62746 Teleogryllus emma mitochondrion AP011611.1 1 20120106 373995 Tenualosa ilisha mitochondrion, strain: cl07 AP011610.1 1 20120106 373995 Tenualosa ilisha mitochondrion, strain: cl10 AP011600.1 1 20120106 691793 Tenualosa sp. cl03 mitochondrion AP011604.1 1 20120106 691798 Tenualosa thibaudeaui mitochondrion AY753545.1 3 20050528 293957 Teratoscincus keyserlingii voucher MVZ 243455 mitochondrion EU236701.1 1 20080619 1037239 Terebellides stroemii EU827196.1 1 20090918 543399 Terebra dimidiata mitochondrion AF331161.1 3 20050415 34513 Terebratalia transversa mitochondrion AJ245743.1 5 20061114 7580 Terebratulina retusa mitochondrion DQ080050.1 1 20051219 86975 Testudo graeca voucher CAS 218245 mitochondrion DQ080049.1 2 20060316 86975 Testudo graeca voucher MVZ 235707 mitochondrion DQ080045.1 2 20060211 101699 Testudo horsfieldii voucher CAS 184468 mitochondrion DQ080048.1 3 20110721 101700 Testudo kleinmanni voucher MVZ 230361 mitochondrion DQ080047.1 3 20060211 101701 Testudo marginata voucher MVZ 247484 mitochondrion AY320033.1 6 20081118 233783 Tethya actinia mitochondrion AB282831.1 1 20100218 242972 Tetrabrachium ocellatum mitochondrion AB126701.1 3 20061114 240496 Tetraclita japonica mitochondrion AP011935.1 2 20110708 303746 Tetractenos glaber mitochondrion DQ927303.1 6 20081126 5901 Tetrahymena malaccensis strain MP75 mitochondrion DQ927304.1 6 20081126 5905 Tetrahymena paravorax strain RP mitochondrion DQ927305.1 6 20081126 5907 Tetrahymena pigmentosa mitochondrion AF160864.1 8 20061212 5908 Tetrahymena pyriformis mitochondrion AF396436.1 5 20061114 5911 Tetrahymena thermophila mitochondrion AY521262.2 5 20061114 267835 Tetraleurodes acaciae mitochondrion AP012025.1 1 20110629 909890 Tetranematichthys quadrifilis mitochondrion HM753535.1 1 20100804 93129 Tetranychus cinnabarinus mitochondrion EU345430.1 3 20080501 32264 Tetranychus urticae mitochondrion AP011921.1 2 20110708 99884 Tetraodon biocellatus mitochondrion AP011924.1 2 20110708 591948 Tetraodon cutcutia mitochondrion AP011923.1 2 20110708 544680 Tetraodon mbu mitochondrion AP011922.1 2 20110708 94908 Tetraodon miurus mitochondrion DQ019313.1 2 20070120 99883 Tetraodon nigroviridis mitochondrion AP011920.1 2 20110708 500390 Tetraodon palembangensis mitochondrion FJ799728.1 1 20100301 459760 Tetraophasis szechenyii mitochondrion EU877953.1 2 20081031 546504 Tetraphalerus bruchi mitochondrion AB470303.1 1 20090508 13720 Tetrapturus angustirostris mitochondrion AF272824.1 5 20061114 48717 Tetrodontophora bielanensis mitochondrion AY158677.2 7 20080423 54026 Thalassarche melanophrys mitochondrion AP010867.1 2 20101229 556248 Thalassenchelys sp. Tht2 mitochondrion GU323224.1 2 20110117 637379 Thalassiosira oceanica CCMP1005 chloroplast EF067921.1 3 20070823 35128 Thalassiosira pseudonana chloroplast DQ186202.1 3 20061114 35128 Thalassiosira pseudonana mitochondrion AP009185.1 2 20110726 325629 Thamnaconus modestus mitochondrion DQ520857.1 1 20060513 382538 Thaumamermis cosgrovei mitochondrion AB282847.1 1 20100218 412642 Thaumatichthys pagidostomus mitochondrion CR940346.1 4 20050731 5874 Theileria annulata mitochondrion Z23263.1 10 20061114 5875 Theileria parva mitochondrion HQ336404.2 3 20110415 3641 Theobroma cacao chloroplast AY639935.1 3 20060829 89055 Thermobia domestica mitochondrion GQ166168.1 2 20100311 576855 Thermophis zhaoermii mitochondrion FJ785426.1 1 20090422 9565 Theropithecus gelada mitochondrion AY728224.1 2 20040922 291261 Thorius n. sp. RLM-2004 mitochondrion GQ358927.1 1 20090816 100858 Threskiornis aethiopicus mitochondrion GU181288.1 1 20101018 460824 Thrinchus schrenkii mitochondrion AF335993.2 11 20061114 159957 Thrips imaginis mitochondrion AJ301644.1 4 20061114 10169 Thryonomys swinderianus mitochondrion AP009616.1 1 20100627 501720 Thryssa baelama mitochondrion HM600784.1 1 20110701 867920 Thulinius sp. DVL-2010 mitochondrion AB101291.1 2 20050414 8235 Thunnus alalunga mitochondrion JN086151.1 1 20110830 8235 Thunnus alalunga mitochondrion, voucher TA02-2314 GU256528.1 2 20100509 8236 Thunnus albacares mitochondrion JN086153.1 1 20110830 8236 Thunnus albacares mitochondrion, voucher TY01-2316 GU256523.1 2 20100509 8240 Thunnus maccoyii mitochondrion JN086150.1 1 20110830 8240 Thunnus maccoyii mitochondrion, voucher TM02-2313 GU256525.1 2 20100509 8241 Thunnus obesus mitochondrion JN086152.1 1 20110830 8241 Thunnus obesus mitochondrion, voucher T002-2315 AB185022.1 4 20071205 8238 Thunnus orientalis mitochondrion GU256522.1 1 20100421 8237 Thunnus thynnus mitochondrion JN086149.1 1 20110830 8237 Thunnus thynnus mitochondrion, voucher TT02-2312 AY302574.2 4 20060719 8242 Thunnus thynnus thynnus mitochondrion HQ425780.1 1 20110830 48169 Thunnus tonggol mitochondrion JN086154.1 1 20110830 48169 Thunnus tonggol mitochondrion, voucher TL02-2317 FJ515780.1 2 20090211 9275 Thylacinus cynocephalus mitochondrion HM174255.1 1 20101004 766170 Thylacodes squamigerus mitochondrion AJ508401.2 6 20061114 191871 Thylamys elegans partial mitochondrion FJ872559.1 2 20100308 70285 Thymallus arcticus mitochondrion FJ853655.1 2 20100308 36185 Thymallus thymallus mitochondrion AY055728.1 4 20061114 174155 Thyropygus sp. DVL-2001 mitochondrion DQ913891.2 3 20090222 6832 Tigriopus californicus mitochondrion AB060648.1 6 20091023 158387 Tigriopus japonicus mitochondrion DQ993184.1 1 20071001 43049 Tilletia indica mitochondrion EF536375.1 2 20081031 117179 Tilletia walkeri strain TJ23 mitochondrion AF338707.3 5 20050527 30468 Tinamus major mitochondrion AB218686.1 2 20090215 27717 Tinca tinca mitochondrion AB158364.1 6 20061114 6637 Todarodes pacificus mitochondrion EU410489.1 2 20090115 497867 Todiramphus sanctus vagans mitochondrion AJ810455.1 5 20080722 184245 Tomistoma schlegelii partial mitochondrion EU237482.1 2 20080221 281489 Topsentia ophiraphidites mitochondrion AP009537.1 2 20090227 478964 Torquigener brevipennis mitochondrion AP011927.1 2 20110708 862791 Torquigener hypselogeneion mitochondrion AP011926.1 2 20110708 303748 Torquigener pleurogramma mitochondrion AF487277.1 4 20061114 264482 Torrubiella piperis mitochondrion AM411108.1 2 20080617 6265 Toxocara canis mitochondrion AM411622.1 2 20080617 6266 Toxocara cati mitochondrion AM412316.1 2 20080617 321166 Toxocara malaysiensis mitochondrion HM856639.1 1 20110427 227614 Toxolasma parvus, isolate H1805 mitochondrion U87145.2 7 20101108 5811 Toxoplasma gondii chloroplast AP006806.1 1 20090822 270537 Toxotes chatareus mitochondrion EU090187.1 2 20080517 28494 Trachelium caeruleum chloroplast FJ392294.1 1 20081110 34903 Trachemys scripta mitochondrion AP002925.1 2 20050416 143894 Trachipterus trachypterus mitochondrion AP003091.1 8 20100907 83875 Trachurus japonicus mitochondrion AB108498.1 5 20071205 36212 Trachurus trachurus mitochondrion EU877954.1 2 20081031 60840 Trachypachus holmbergi mitochondrion AY863425.1 3 20050527 54181 Trachypithecus obscurus mitochondrion GU187969.1 2 20101203 30407 Tragopan caboti mitochondrion FJ752427.1 4 20100615 9071 Tragopan temminckii mitochondrion GU723273.1 3 20100615 575983 Trametes cingulata mitochondrion EU914849.1 1 20091231 227627 Traulia szetschuanensis mitochondrion EF196665.1 1 20071101 9638 Tremarctos ornatus mitochondrion JF973315.1 1 20111018 93845 Treubia lacunosa mitochondrion AP009172.1 2 20070920 245701 Triacanthodes anomalus mitochondrion AP009174.1 2 20070920 384595 Triacanthus biaculeatus mitochondrion AY521265.2 5 20061114 88556 Trialeurodes vaporariorum mitochondrion AF301594.1 5 20061114 72491 Triatoma dimidiata mitochondrion AJ312413.2 4 20061114 7070 Tribolium castaneum mitochondrion AB218896.1 2 20090215 264447 Tribolodon nakamurai mitochondrion AM904728.1 2 20080818 9778 Trichechus manatus mitochondrion AF293969.1 1 20010226 6334 Trichinella spiralis mitochondrion EU339148.1 2 20090903 235211 Trichiurus japonicus mitochondrion DQ859919.1 2 20080606 157069 Trichobilharzia regenti mitochondrion JN861750.1 1 20111113 174634 Trichocera bimacula mitochondrion AY191994.1 2 20050416 89825 Tricholepidion gertschi mitochondrion AP012026.1 1 20110629 245746 Trichomycterus areolatus mitochondrial DNA DQ866051.1 1 20070104 395991 Trichophthalma punctata mitochondrion FJ385027.1 1 20090618 523103 Trichophyton mentagrophytes mitochondrion FJ385026.1 1 20090618 5551 Trichophyton rubrum mitochondrion DQ112541.1 3 20081224 10228 Trichoplax adhaerens mitochondrion GQ888719.1 1 20100213 40349 Trichostrongylus axei mitochondrion GQ888711.1 1 20100213 40352 Trichostrongylus vitrinus mitochondrion AF357238.1 5 20050527 9337 Trichosurus vulpecula mitochondrion EU440735.1 1 20100202 227356 Tricula hortensis mitochondrion JN244650.1 1 20110816 55553 Tridentiger bifasciatus mitochondrion EU849487.1 1 20081230 3900 Trifolium subterraneum chloroplast EU016193.1 3 20081126 50637 Trigoniophthalmus alternatus mitochondrion AP011449.1 1 20110513 345260 Trigonostigma espei mitochondrion AP011421.1 1 20110513 432397 Trigonostigma heteromorpha mitochondrion, except for D-loop JN632509.1 1 20111024 981059 Trimusculus reticulatus mitochondrion AB474916.1 1 20100601 179915 Trioceros melleri mitochondrion AP009170.1 2 20070920 300227 Triodon macropterus mitochondrion AB477345.1 2 20090717 101491 Trionyx triunguis mitochondrion AB084514.1 2 20050414 194544 Triops cancriformis mitochondrion AY639934.1 2 20060829 58777 Triops longicaudatus mitochondrion GU949546.1 1 20100401 747041 Triploid Megalobrama amblycephala x Xenocypris davidi mitochondrion DQ984517.1 4 20061212 4563 Tripsacum dactyloides cultivar Pete mitochondrion AB042240.3 12 20070823 4565 Triticum aestivum chloroplast AP008982.1 4 20061114 4565 Triticum aestivum mitochondrion, cultivar Chinese Spring GU985444.1 1 20110408 4565 Triticum aestivum mitochondrion, cultivar K-type Chinese Yumai cytoplasmic sterility line HQ697272.1 1 20110626 8326 Triturus carnifex mitochondrion, voucher ZMA9108-405 HQ697273.1 1 20110626 8323 Triturus cristatus mitochondrion, voucher ZMA7802-594 HQ697274.1 1 20110626 8327 Triturus dobrogicus mitochondrion, voucher ZMA9103-880 HQ697275.1 1 20110626 8325 Triturus karelinii mitochondrion, voucher 2103 HQ697277.1 1 20110626 8325 Triturus karelinii mitochondrion, voucher 2360 HQ697276.1 1 20110626 8325 Triturus karelinii mitochondrion, voucher 2412 HQ697278.1 1 20110626 385668 Triturus macedonicus mitochondrion, voucher 2104 HQ697279.1 1 20110626 8328 Triturus marmoratus mitochondrion, voucher ZMA9095-518 HQ697280.1 1 20110626 171367 Triturus pygmaeus mitochondrion, voucher ZMA7677-282 AP009173.1 2 20070920 245703 Trixiphichthys weberi mitochondrion EU938374.1 1 20080930 552514 Troglophilus neglectus mitochondrion EU410490.1 2 20090115 59419 Trogon viridis mitochondrion EU625344.1 1 20101230 501369 Troides aeacus mitochondrion AP006015.1 2 20081119 8148 Tropheus duboisi mitochondrion FJ755181.1 2 20090618 51980 Tropidophis haetianus mitochondrion GU176339.1 1 20100713 696091 Tropisternus sp. BYU-CO166 mitochondrion M15323.1 6 20000304 5691 Trypanosoma brucei kinetoplast minicircle H39 M15324.1 6 20000304 5691 Trypanosoma brucei kinetoplast minicircle H40 M15321.1 6 20000304 5691 Trypanosoma brucei kinetoplast minicircle P1 M15322.1 6 20000304 5691 Trypanosoma brucei kinetoplast minicircle P2 DQ343645.1 3 20060504 5693 Trypanosoma cruzi strain CL Brener kinetoplast maxicircle DQ343646.1 3 20060504 5693 Trypanosoma cruzi strain Esmeraldo kinetoplast maxicircle AY918061.1 2 20060613 5697 Trypanosoma evansi kinetoplast minicircle JQ027694.1 1 20120102 1054643 Trypauchen vagina mitochondrion EU031048.1 1 20090731 329627 Tscherskia triton mitochondrion EU563937.1 1 20110603 365325 Tubulipora flabellaris mitochondrion AF217811.1 3 20061114 37347 Tupaia belangeri mitochondrion EU557092.1 1 20090203 79784 Tursiops aduncus mitochondrion EU557093.1 1 20090203 9739 Tursiops truncatus mitochondrion AP011939.1 2 20110708 862805 Tylerius spinosissimus mitochondrion AP009509.1 3 20091127 32513 Tylochromis polylepis mitochondrion HM544132.1 1 20110830 61882 Tympanoctomys barrerae mitochondrion, voucher AK13811 GU195652.1 2 20100319 4733 Typha latifolia chloroplast AF154051.1 2 20050415 8456 Typhlonectes natans mitochondrion EU747730.1 1 20080608 534403 Typhlops reticulatus mitochondrion EF551004.1 2 20090605 29064 Uncia uncia mitochondrion EU856396.1 3 20100818 350889 Unionicola foili mitochondrion HQ386015.1 3 20110603 350891 Unionicola parkeri mitochondrion AY456254.1 4 20081216 262585 Uraeotyphlus cf. oxyurus MW-212 mitochondrion AY619711.1 2 20050416 6431 Urechis caupo mitochondrion EF656365.1 2 20090629 6432 Urechis unicinctus mitochondrion EU523756.1 1 20080401 507508 Uroctonus mordax mitochondrion AB114447.1 1 20100601 236742 Uromastyx benti mitochondrion AB099483.1 3 20050414 106106 Urotrichus talpoides mitochondrion AF303109.1 2 20050415 9643 Ursus americanus mitochondrion AF303110.1 2 20050415 9644 Ursus arctos mitochondrion AF303111.1 2 20050415 29073 Ursus maritimus mitochondrion FM177760.1 1 20080731 39097 Ursus spelaeus mitochondrion EF196661.1 1 20071101 9642 Ursus thibetanus mitochondrion EF076773.1 1 20070402 411875 Ursus thibetanus formosanus mitochondrion DQ402478.1 1 20070104 262110 Ursus thibetanus mupinensis mitochondrion EF587265.1 1 20080531 441215 Ursus thibetanus thibetanus mitochondrion EF681884.1 1 20080731 262111 Ursus thibetanus ussuricus mitochondrion DQ157700.1 2 20061114 5270 Ustilago maydis mitochondrion HM856637.1 1 20110427 52383 Utterbackia imbecillis, isolate 28CD10-86 mitochondrion HM856635.1 1 20110427 872316 Utterbackia peninsularis, isolate 14GCP2-88 mitochondrion HM856636.1 1 20110427 872316 Utterbackia peninsularis, isolate 18HRH6-88 mitochondrion AM501482.1 2 20090130 126794 Vaccinia virus Ankara EU237489.1 2 20080221 479641 Vaceletia sp. GW948 mitochondrion AB242173.1 3 20090215 357290 Vaillantella maassi mitochondrion FJ456952.1 1 20090618 575843 Valentia hoffmanni mitochondrion AB266515.1 2 20070724 55288 Vampyroteuthis infernalis mitochondrion DQ302100.1 2 20060915 32432 Vanhornia eucnemidarum mitochondrion AB185327.1 2 20080924 62046 Varanus niloticus mitochondrion EU747731.1 1 20080604 62051 Varanus salvator mitochondrion AB371089.1 1 20090603 87289 Varecia variegata variegata mitochondrion AB114300.1 5 20070915 6674 Vargula hilgendorfii mitochondrion AJ493124.2 4 20090714 109461 Varroa destructor mitochondrion EU912438.1 2 20081224 109269 Vaucheria litorea chloroplast AP008991.1 1 20060621 332670 Ventrifossa garmani mitochondrion FJ809752.1 1 20091223 301928 Venustaconcha ellipsiformis mitochondrion EF025506.1 3 20080531 98923 Verasper moseri mitochondrion DQ403797.1 5 20080531 82366 Verasper variegatus mitochondrion DQ351941.1 2 20061114 27337 Verticillium dahliae mitochondrion X05406.1 4 20100827 3906 Vicia faba mitochondrial plasmid 1 X05407.1 2 19950509 3906 Vicia faba mitochondrial plasmid 2 X05408.1 2 20100827 3906 Vicia faba mitochondrial plasmid 3 X59266.1 13 20060630 3906 Vicia faba mitochondrial plasmid MtVFPL3 Y19184.1 3 20061114 30538 Vicugna pacos mitochondrion FJ456892.1 2 20100909 9843 Vicugna vicugna mitochondrion AF090341.1 5 20050409 81927 Vidua chalybeata mitochondrion GQ893027.1 1 20100205 157791 Vigna radiata chloroplast HM367685.1 1 20110201 157791 Vigna radiata mitochondrion FJ752492.1 1 20090303 604432 Viridovipera stejnegeri stejnegeri mitochondrion FM179380.1 2 20090630 29760 Vitis vinifera mitochondrion DQ424856.1 2 20061114 29760 Vitis vinifera cultivar Maxxa chloroplast AJ304826.1 6 20061114 29139 Vombatus ursinus mitochondrion AM181037.1 3 20070821 9627 Vulpes vulpes mitochondrion AB300500.1 1 20080702 436352 Walchia hayashii mitochondrion AB240152.1 3 20061114 6625 Watasenia scintillans mitochondrion EU365892.2 7 20090515 193294 Watersipora subtorquata mitochondrion GQ332427.1 2 20111020 435744 Wellcomia siamensis mitochondrion EU342371.1 1 20080507 3377 Welwitschia mirabilis chloroplast EU304459.1 1 20091130 486152 Whitmania pigra mitochondrion JN160605.1 2 20110927 161112 Wolffia australiana strain 7733 chloroplast JN160604.1 2 20110927 161126 Wolffiella lingulata strain 7289 chloroplast HQ184469.1 1 20111031 6293 Wuchereria bancrofti mitochondrion AP009211.1 1 20090110 303701 Xanthichthys auromarginatus mitochondrion DQ008215.1 1 20060525 330728 Xenagama taylori mitochondrion AP009182.1 2 20110726 388625 Xenobalistes tumidipectoris mitochondrion AP009059.1 1 20061211 70546 Xenocypris argentea mitochondrion GQ289558.1 1 20090727 291826 Xenocypris davidi mitochondrion EU727203.1 1 20091104 533011 Xenograpsus testudinatus mitochondrion AP008927.1 2 20101229 112162 Xenomystus nigri mitochondrion AB179620.1 4 20080924 196253 Xenopeltis unicolor mitochondrion AB370891.1 1 20080827 123689 Xenopoecilus sarasinorum mitochondrion AY789013.1 2 20050416 8364 Xenopus (Silurana) tropicalis mitochondrion HM991335.1 1 20110527 8355 Xenopus laevis mitochondrion M10217.1 6 20061114 8355 Xenopus laevis mitochondrion, clone pXlm-31 AP006777.1 1 20081016 28762 Xenotoca eiseni mitochondrion DQ832701.1 3 20081119 242395 Xenoturbella bocki mitochondrion EU237490.1 2 20080221 178552 Xestospongia muta mitochondrion AB470301.1 1 20090508 8245 Xiphias gladius mitochondrion AY382608.1 3 20070327 208518 Xiphinema americanum mitochondrion FJ226476.1 1 20090810 8084 Xiphophorus hellerii mitochondrion AP005982.1 1 20081016 8083 Xiphophorus maculatus mitochondrion GU945503.1 1 20100908 747044 Xyleus modestus mitochondrion EU265776.1 1 20071124 154827 Xyrauchen texanus mitochondrion AP011398.1 1 20110513 143608 Yaoshanicus arcus mitochondrion AJ307410.1 11 20111205 4952 Yarrowia lipolytica mitochondrion EU427346.1 1 20081224 498953 Yemmalysus parallelus mitochondrion AB218898.1 2 20090215 327405 Zacco sieboldii mitochondrion AJ639865.1 5 20061121 33543 Zaglossus bruijni mitochondrion AM181017.1 3 20070821 9704 Zalophus californianus mitochondrion AP009162.1 2 20070920 75044 Zanclus cornutus mitochondrion DQ645537.1 4 20061212 15945 Zea luxurians mitochondrion M11163.1 9 20061114 4577 Zea mays 1.9 kb mitochondrial plasmid X86563.2 35 20061114 4577 Zea mays chloroplast AY928077.1 1 20060131 4577 Zea mays cultivar B73 chloroplast AY506529.1 6 20061123 4577 Zea mays mitochondrion DQ645536.1 6 20071101 381124 Zea mays subsp. mays mitochondrion DQ645539.1 4 20061212 76912 Zea mays subsp. parviglumis mitochondrion DQ645538.1 4 20061212 4580 Zea perennis mitochondrion AP006032.1 1 20070920 175439 Zebrasoma flavescens mitochondrion HM640211.1 2 20110527 115703 Zenaida auriculata mitochondrion AP004434.1 2 20050416 181443 Zenion japonicum mitochondrion AP002942.1 2 20050416 94939 Zenopsis nebulosus mitochondrion AP002941.1 2 20050416 64108 Zeus faber mitochondrion AP011545.1 1 20100205 648573 Zonosagitta nagae mitochondrion AP002926.1 2 20050416 143325 Zu cristatus mitochondrion AY958086.1 2 20061114 35869 Zygnema circumcarinatum chloroplast EU090238.1 3 20100914 1047171 Zymoseptoria tritici mitochondrion