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Tools
Data Annotation Tools
- EFO tools
- Experimental Factor Ontology supporting tools
Data Management Tools
- SIMBioMS
- A System for Information Management in BioMedical Studies
- SAIL
- System for managing and browsing sample data across biobanks
Analysis Tools
- Expression Atlas
- How to get a standalone version of the Expression Atlas
R Tools
- EBI R workbench
- Online access to R/Bioconductor at EBI
- ArrayExpress
- R package to build Bioconductor structures with ArrayExpress data
- ArrayExpressHTS
- R package for RNA-seq data processing and quality assessment
- ontoCAT
- R package to support basic operations on ontologies: traversal and search, uniform access to ontologies in OWL and OBO formats
- AffyParaEBI
- R package for Affymetrix microarray RMA pre-processing for EBI R workbench
Submission Tools
Found here
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