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EBIGroupsExternal Services TeamPublications

External Services Publications

The following is a list of publications for the External Services (ES) team.
N.B. * denotes ES team members.


2012


Clarke L., Zheng-Bradley X., Smith R., Kulesha Eugene., Xiao C., Toneva I., Vaughan B., Preuss D., Leinonen R., Shumway M., Sherry S., Flicek P. & The 1000 Genomes Project Consortium. (2012)
The 1000 Genomes Project: data management and community access.
Nature Methods 9, 459–462 (2012)
DOI: 10.1038/nmeth.1974

Weizhong Li*, McWilliam H.*, Goujon M.*, Cowley A.*, Lopez R.*, and Pearson W.R. (2012)
PSI-Search: iterative HOE-reduced profile SSEARCH searching.
Bioinformatics first published online April 25, 2012
PMID: 22539666 Abstract DOI: 10.1093/bioinformatics/bts240

2011


Schneider,M.V., Walter,P*., Blatter,M.C., Watson,J., Brazas,M,D., Rother,K., Budd,A., Via,A., van Gelder,C.W., Jacob,J., Fernandes,P., Nyrönen,T.H., De Las Rivas,J., Blicher,T., Jimenez,R.C., Loveland,J., McDowall,J*., Jones,P., Vaughan,B.W*., Lopez,R*., Attwood,T.K. and Brooksbank,C (2011).
Bioinformatics Training Network (BTN): a community resource for bioinformatics trainers.
Briefings in bioinformatics
PMID: 22110242 Abstract DOI: 10.1093/bib/bbr064

The UniProt Consortium (2011)
Reorganizing the protein space at the Universal Protein Resource (UniProt).
Nucl. Acids Res. first published online November 18, 2011
DOI: 10.1093/nar/gkr981

Hunter S., Jones P., Mitchell A., Apweiler R., Attwood T.K., Bateman A, Bernard T., Binns D., Bork P., Burge S, de Castro E., Coggill P., Corbett M, Das U., Daugherty L., Duquenne L., Finn R.D., Fraser M., Gough J., Haft D., Hulo N., Kahn D., Kelly E., Letunic I., Lonsdale D., Lopez R*., Madera M., Maslen J., McAnulla C., McDowall J*., McMenamin C., Mi H., Mutowo-Muellenet P., Mulder N., Natale D., Orengo C., Pesseat S., Punta M., Quinn A.F., Rivoire C., Sangrador-Vegas A., Selengut J.D., Sigrist C.J.A., Scheremetjew M., Tate J., Thimmajanarthanan M., Thomas P.D., Wu C.H., Yeats C. and Yong S-Y. (2011)
InterPro in 2011: new developments in the family and domain prediction database.
Nucl. Acids Res. first published online November 16, 2011
DOI: 10.1093/nar/gkr948

Sievers F., Wilm A., Dineen D., Gibson T.J., Karplus, K., Li, W*., Lopez R*., McWilliam H*., Remmert M., Söding J., Thompson J.D. and Higgins D.G. (2011)
Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega.
Molecular Systems Biology 7:539
PMID: 21988835 Abstract DOI: 10.1038/msb.2011.75 full-text PDF full-text HTML

Robinson J., Mistry K., McWilliam H*., Lopez R*., Parham P. and Marsh S.G. (2011)
The IMGT/HLA database.
Nucleic Acids Research 39:D1171-6.
PMID: 21071412 Abstract DOI: 10.1093/nar/gkq998 full-text PDF

2010


Wright V.A., Vaughan B.W*., Laurent T*., Lopez R*., Brooksbank C. and Schneider M.V. (2010)
Bioinformatics training: selecting an appropriate learning content management system--an example from the European Bioinformatics Institute.
Briefings in Bioinformatics 11(6):552-62.
PMID: 20601435 Abstract DOI: 10.1093/bib/bbq023 full-text PDF

Bhagat J., Tanoh F., Nzuobontane E*., Laurent T*., Orlowski J., Roos M., Wolstencroft K., Aleksejevs S., Stevens R., Pettifer S., Lopez R*. and Goble, C.A. (2010)
BioCatalogue: a universal catalogue of web services for the life sciences.
Nucleic Acids Research 38:W689-W694.
PMID: 20484378 Abstract DOI: 10.1093/nar/gkq394 full-text PDF

Goujon M*, McWilliam H*, Li W*, Valentin F*, Squizzato S*., Paern J*., Lopez R*.(2010)
A new bioinformatics analysis tools framework at EMBL–EBI.
Nucleic Acids Research 38:W689-W694.
PMID: 20439314 Abstract DOI: 10.1093/nar/gkq313 full-text PDF

Valentin F.*, Squizzato S.*, Goujon M.*, McWilliam H.*, Paern J.* and Lopez R.* (2010)
Fast and efficient searching of biological data resources—using EB-eye.
Briefings in Bioinformatics 11(4):375-384.
PMID: 20150321 Abstract DOI: 10.1093/bib/bbp065 full-text PDF

Kersey P.J., Lawson D., Birney E., Derwent P.S., Haimel M., Herrero J., Keenan S., Kerhornou A., Koscielny G., Kähäri A., Kinsella R.J., Kulesha E., Maheswari U., Megy K., Nuhn M., Proctor G., Staines D., Valentin F.*, Vilella A.J., Yates A. (2010)
Ensembl genomes: Extending ensembl across the taxonomic space.
Nucleic Acids Research 38: D563-D569.
PMID: 19884133 Abstract DOI: 10.1093/nar/gkp871 full-text PDF

Leinonen R., Akhtar R., Birney E, Bonfield J., Bower L., Corbett M., Cheng Y., Demiralp F., Faruque N., Goodgame N., Gibson R, Hoad G., Hunter C., Jang M., Leonard S., Lin Q., Lopez R*., Maguire M., McWilliam H*., Plaister S, Radhakrishnan R, Sobhany S, Slater G., Ten Hoopen P., Valentin F*., Vaughan R*., Zalunin V., Zerbino D., Cochrane G. (2010)
Improvements to services at the European Nucleotide Archive.
Nucleic Acids Research 38: D39-D45.
PMID: 19906712 Abstract DOI: 10.1093/nar/gkp998 full-text PDF

Li W.*, McWilliam H.*, de la Torre A.R., Grodowski A., Benediktovich I., Goujon M.*, Nauche S., Lopez R.* (2010)
Non-redundant patent sequence databases with value-added annotations at two levels.
Nucleic Acids Research 38: D52-D56.
PMID: 19884134 Abstract DOI: 10.1093/nar/gkp960 full-text PDF

Robinson J., Mistry K., McWilliam H*., Lopez R*., Marsh S.G. (2010)
IPD--the Immuno Polymorphism Database.
Nucleic Acids Research 38: D863-D869.
PMID: 19875415 Abstract DOI: 10.1093/nar/gkp879 full-text PDF

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2009


Cochrane G., Akhtar R., Bonfield J., Bower L., Demiralp F., Faruque N., Gibson R., Hoad G., Hubbard T., Hunter C., Jang M., Juhos S., Leinonen R., Leonard S., Lin Q., Lopez R.*, Lorenc D., McWilliam H.*, Mukherjee G., Plaister S., Radhakrishnan R., Robinson S.*, Sobhany S., Hoopen P.T., Vaughan R., Zalunin V., Birney E. (2009)
Petabyte-scale innovations at the European Nucleotide Archive.
Nucleic Acids Research 37: D19-D25.
PMID: 18978013 Abstract DOI: 10.1093/nar/gkn765 full-text PDF

Goble C., Belhajjame K., Tanoh F., Bhagat J., Wolstencroft K., Stevens R., Nzuobontane E.*, McWilliam H.*, Laurent T.* and Lopez R.* (2009)
BioCatalogue: A Curated Web Service Registry For The Life Science Community.
Nature Precedings DOI:10.1038/npre.2009.3132.1
Abstract DOI: 10.1038/npre.2009.3132.1 full-text PDF

Hunter S., Apweiler R., Attwood T.K., Bairoch A., Bateman A., Binns D., Bork P., Das D., Daugherty L., Duquenne L., Finn R.D., Gough J., Haft D., Hulo N., Kahn D., Kelly E., Laugraud A., Letunic I., Lonsdale D., Lopez R*., Madera M., Maslen J., McAnulla C., McDowall J*., Mistry J., Mitchell A., Mulder N., Natale D., Orengo C., Quinn A.F., Selengut J.D., Sigrist C.J.A., Thimma M., Thomas P.D., Valentin F*., Wilson D., Wu C.H. and Yeats C. (2009)
InterPro: the integrative protein signature database
Nucleic Acids Research 37: D211-D215.
PMID: 18940856 Abstract DOI: 10.1093/nar/gkn765 full-text PDF

McWilliam H*., Valentin F.*, Goujon M.*, Li W., Narayanasamy M., Martin J.*, Miyar T. and Lopez R*. (2009)
Web services at the European Bioinformatics Institute-2009
Nucleic Acids Research 37: W6-W10.
PMID: 19435877 Abstract DOI: 10.1093/nar/gkp302 full-text PDF

Li, W.*, Gracey, A.Y., Vieira Mello, L., Brass, A. and Cossins, A.R. (2009)
ExprAlign - the identification of ESTs in non-model species by alignment of cDNA microarray expression profiles.
BMC Genomics, 10: 560.
PMID: 19939286 Abstract DOI: 10.1186/1471-2164-10-560 full-text PDF

Robinson J., Waller M.J., Fail S.C., McWilliam H.*, Lopez R.*, Parham P., Marsh S.G. (2009)
The IMGT/HLA database.
Nucleic Acids Research 37: D1013-D1017.
PMID: 18838392 Abstract DOI: 10.1093/nar/gkn662 full-text PDF

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2008


Chica C., Labarga A.*, Gould C.M, Lopez R*. and Gibson T. (2008)
A tree-based conservation scoring method for short linear motifs in multiple alignments of protein sequences
BMC Bioinformatics 6(9): 229-229.
PMID: 18460207 Abstract DOI: 10.1186/1471-2105-9-229 full-text PDF

Cochrane G., Akhtar R., Aldebert P., Althorpe N., Baldwin A., Bates K., Bhattacharyya S., Bonfield J., Bower L., Browne P., Castro M., Cox A., Demiralp F., Eberhardt R., Faruque N., Hoad G., Jang M., Kulikova T., Labarga A.*, Leinonen R., Leonard S., Lin Q., Lopez R*., Lorenc D., McWilliam H.*, Mukherjee G., Nardone F., Plaister S., Robinson S.*, Sobhany S., Vaughan R., Wu D., Zhu W., Apweiler R., Hubbard T. and Birney E. (2008)
Priorities for nucleotide trace, sequence and annotation data capture at the Ensembl Trace Archive and the EMBL Nucleotide Sequence Database
Nucleic Acids Research 36: D5-D12.
PMID: 18039715 Abstract DOI: 10.1093/nar/gkm1018 full-text PDF

Goble C., Stevens R., Hull D., Wolstencroft K. and Lopez R.* (2008)
Data curation + process curation=data integration + science
Briefings in Bioinformatics 9(6): 506-517.
PMID: 19060304 Abstract DOI: 10.1093/bib/bbn034 full-text PDF

Goujon M.*, Valentin F.*, Miyar T.*, McWilliam H.* and Lopez, R.* (2008)
The EB-eye
embnet.news Volume 13 Nr. 4 December 2007
full-text PDF

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2007


Labarga A.*, Valentin F.*, Anderson M.* and Lopez R.* (2007)
Web Services at the European Bioinformatics Institute
Nucleic Acids Research 35: W6-W11.
PMID: 17576686 Abstract DOI: 10.1093/nar/gkm291 full-text HTML

Larkin M.A., Blackshields G., Brown N.P., Chenna R., McGettigan P.A., McWilliam H.*, Valentin F.*, Wallace I.M., Wilm A., Lopez R.*, Thompson J.D., Gibson T.J. and Higgins D.G. (2007)
ClustalW2 and ClustalX version 2.
Bioinformatics 23(21): 2947-2948.
PMID: 17846036 Abstract DOI: 10.1093/bioinformatics/btm404 full-text PDF

Kulikova T., Akhtar R., Aldebert P., Althorpe N., Andersson M.*, Baldwin A., Bates K., Bhattacharyya S., Bower L., Browne P., Castro M., Cochrane G., Duggan K.*, Eberhardt R., Faruque N., Hoad G., Kanz C., Lee C., Leinonen R., Lin Q., Lombard V., Lopez R.*, Lorenc D., McWilliam H.*, Mukherjee G., Nardone F., Pastor M.P.G, Plaister S., Sobhany S., Stoehr P., Vaughan R., Wu D., Zhu W. and Apweiler R. (2007)
EMBL Nucleotide Sequence Database in 2006.
Nucleic Acids Research 35: D16-D20.
PMID: 17148479 Abstract DOI: 10.1093/nar/gkl913 full-text HTML

Lopez R. (2007)
Prediction of protein function.
In: Bioinformatics: Methods Express, editor Paul Dear, Scion Publishing Ltd
More Info

Mulder N.J., Apweiler R., Attwood T.K., Bairoch A., Bateman A., Binns D., Bork P., Buillard V., Cerutti L., Copley R., Courcelle E., Das U., Daugherty L., Dibley M., Finn R., Fleischmann W., Gough J., Haft D., Hulo N., Hunter S., Kahn D., Kanapin A., Kejariwal A., Labarga A.*, Langendijk-Genevaux P.S., Lonsdale D., Lopez R.*, Letunic I., Madera M., Maslen J., McAnulla C., McDowall J., Mistry J., Mitchell A., Nikolskaya A.N., Orchard S., Orengo C., Petryszak R., Selengut J.D., Sigrist C.J.A., Thomas P.D., Valentin F.*, Wilson D., Wu C.H. and Yeats C. (2007)
New developmentsin the InterPro database.
Nucleic Acids Research 35: D224-D228.
PMID: 17202162 Abstract DOI: 10.1093/nar/gkl841 full-text HTML

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2006


Albeck, S., Alzari, P., Andreini, C., Banci, L., Berry, I.M., Bertini, I., Cambillau, C., Canard, B., Carter, L., Cohen, S.X., Diprose, J.M., Dym, O., Esnouf, R.M., Felder, C., Ferron, F., Guillemot, F., Hamer, R., Ben Jelloul, M., Laskowski, R.A., Laurent, T.*, Longhi, S., Lopez, R.*, Luchinat, C., Malet, H., Mochel, T., Morris, R.J., Moulinier, L., Oinn, T., Pajon,A., Peleg, Y., Perrakis, A., Poch, O., Prilusky, J., Rachedi, A., Ripp, R., Rosato, A., Silman, I., Stuart, D.I., Sussman, J.L., Thierry, J.C., Thompson, J.D., Thornton, J.M., Unger, T., Vaughan, B., Vranken, W., Watson, J.D., Whamond, G. and Henrick, K. (2006)
SPINE bioinformatics and data-management aspects of high-throughput structural biology.
Acta Crystallogr Section D: Biolical Crystallography 62(10): 1184-95.
PMID: 17001095 Abstract DOI: 10.1107/S090744490602991X full-text PDF

Cochrane G., Aldebert P., Althorpe N., Andersson M.*, Baker W., Baldwin A., Bates K., Bhattacharyya S., Browne P., Van Den Broek A., Castro M., Duggan K.*, Eberhardt R., Faruque N., Gamble J., Kanz C., Kulikova T., Lee C., Leinonen R., Lin Q., Lombard V., Lopez R.*, McHale M., McWilliam H.*, Mukherjee G., Nardone F., Pastor M.P., Sobhany S., Stoehr P., Tzouvara K., Vaughan R., Wu D., Zhu W. and Apweiler R. (2006)
EMBL Nucleotide Sequence Database: developments in 2005.
Nucleic Acids Res 34: D10-D15.
PMID: 16381823 Abstract DOI: 10.1093/nar/gkj130 full-text PDF

Labarga, A.* and Brooksbank, C. (2006)
A Quick Guide to Web Services at the EMBL-EBI.
OBBeC Life. Science and Bioinformatics June, 24-26.
full-text HTML

Whelan S., de Bakker P.I.W, Quevillon E.*, Rodriguez N. and Goldman N. (2006)
PANDIT: an evolution-centric database of protein and associated nucleotide domains with inferred trees.
Nucleic Acids Research 34: D327-D331.
PMID: 16381879 Abstract DOI: 10.1093/nar/gkj087 full-text PDF

Wu C.H., Apweiler R., Bairoch A., Natale D.A, Barker W.C., Boeckmann B., Ferro S., Gasteiger E., Huang H., Lopez R.*, Magrane M., Martin M.J., Mazumder R., O'Donovan C., Redaschi N. and Suzek B. (2006)
The Universal Protein Resource (UniProt): an expanding universe of protein information.
Nucleic Acids Research 34: D187-D191.
PMID: 16381842 Abstract DOI: 10.1093/nar/gkj161 full-text PDF

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2005


Bairoch A., Apweiler R., Wu C.H., Barker W.C., Boeckmann B., Ferro S., Gasteiger E., Huang H., Lopez R.*, Magrane M., Martin M.J., Natale D.A., O'Donovan C., Redaschi N. and Yeh L.S. (2005)
The Universal Protein Resource (UniProt).
Nucleic Acids Research 33: D154-D159.
PMID: 15608167 Abstract DOI: 1093/nar/gki070 full-text PDF

Kanz C., Aldebert P., Althorpe N., Baker W., Baldwin A., Bates K., Browne P., van den Broek A., Castro M., Cochrane G., Duggan K.*, Eberhardt R., Faruque N., Gamble J., Diez F.G., Harte N.*, Kulikova T, Lin Q, Lombard V, Lopez R.*, Mancuso R., McHale M., Nardone F., Silventoinen V.*, Sobhany S., Stoehr P., Tuli M.A., Tzouvara K., Vaughan R., Wu D., Zhu W. and Apweiler R. (2005)
The EMBL Nucleotide Sequence Database.
Nucleic Acids Research 33: D29-D33.
PMID: 15608199 Abstract DOI: 10.1093/nar/gki098 full-text PDF

Kersey P., Bower L., Morris L., Horne A., Petryszak R., Kanz C., Kanapin A., Das U., Michoud K., Phan I., Gattiker A., Kulikova T., Faruque N., Duggan K.*, Mclaren P., Reimholz B., Duret L., Penel S., Reuter I. and Apweiler R. (2005)
Integr8 and Genome Reviews: integrated views of complete genomes and proteomes.
Nucleic Acids Research 33: D297-D302.
PMID: 15608201 Abstract DOI: 10.1093/nar/gki039 full-text PDF

Labarga A.*, Pilai S.*, Valentin F.*, Anderson M.* and Lopez R.* (2005)
Web services at the European Bioinformatics Institute
EMBnet.news magazine, Volume 11 , Issue 4.
full-text PDF

Mulder N.J., Apweiler R., Attwood T.K., Bairoch A., Bateman A., Binns D., Bradley P., Bork P., Bucher P., Cerutti L., Copley R., Courcelle E., Das U., Durbin R., Fleischmann W., Gough J., Haft D., Harte N.*, Hulo N., Kahn D., Kanapin A., Krestyaninova M., Lonsdale D., Lopez R.*, Letunic I., Madera M., Maslen J., McDowall J., Mitchell A., Nikolskaya A.N., Orchard S., Pagni M., Ponting C.P., Quevillon E.*, Selengut J., Sigrist C.J., Silventoinen V.*, Studholme D.J., Vaughan R. and Wu C.H. (2005)
InterPro, progress and status in 2005.
Nucleic Acids Research 33: D201-D205.
PMID: 15608177 Abstract DOI: 10.1093/nar/gki106 full-text PDF

Pillai S.*, Silventoinen V.*, Kallio K., Senger M., Sobhany S., Tate J., Velankar S., Golovin A., Henrick K., Rice P., Stoehr P. and Lopez R.* (2005)
SOAP-based services provided by the European Bioinformatics Institute.
Nucleic Acids Research 33: W25-W28.
PMID: 15980463 Abstract DOI: 10.1093/nar/gki106 full-text PDF

Quevillon E.*, Silventoinen V.*, Pillai S.*, Harte N.*, Mulder N., Apweiler R. and Lopez R.* (2005)
InterProScan: protein domains identifier.
Nucleic Acids Research 33: W116-W120.
PMID: 15980438 Abstract DOI: 10.1093/nar/gki442 full-text PDF

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2004


Camon E., Magrane M., Barrell D., Lee V., Dimmer E., Maslen J., Binns D., Harte N.,* Lopez R.* and Apweiler R. (2004)
The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology.
Nucleic Acids Research 32: D262-266.
PMID: 14681408 Abstract DOI: 10.1093/nar/gkh021 full-text PDF

Harte N.*, Silventoinen V.*, Quevillon E.*, Robinson S.*, Kallio K., Fustero X., Patel P., Jokinen P. and Lopez R.* (2004)
Public web-based services from the European Bioinformatics Institute.
Nucleic Acids Research 32: W3-W9.
PMID: 15215339 Abstract DOI: 10.1093/nar/gkh405 full-text HTML

Kulikova T., Aldebert P., Althorpe N., Baker W., Bates K., Browne P., van den Broek A., Cochrane G., Duggan K.*, Eberhardt R., Faruque N., Garcia-Pastor M., Harte N.*, Kanz C., Leinonen R., Lin Q., Lombard Vt., Lopez R.*, Mancuso R., McHale M., Nardone F., Silventoinen V.*, Stoehr P., Stoesser G., Tuli M.A., Tzouvara K., Vaughan R., Wu D., Zhu W. and Apweiler R. (2004)
The EMBL Nucleotide Sequence Database.,
Nucleic Acids Research 32: D27-D30.
PMID: 14681351 Abstract DOI: 10.1093/nar/gkh120 full-text PDF

Leinonen R., Diez F.G., Binns D., Fleischmann W., Lopez R.* and Apweiler R. (2004)
UniProt Archive.
Bioinformatics 20(17): 3236-3237.
PMID: 15044231 Abstract DOI: 10.1093/bioinformatics/bth191 full-text PDF

Robinson P.N., Bohme U., Lopez R.*, Mundlos S. and Nurnberg P. (2004)
Gene-ontology analysis reveals association of tissue-specific 5' CpG-island genes with development and embryogenesis.
Human Molecular Genetics 13(17): 1969-1978
PMID: 15254011 Abstract DOI: 10.1093/hmg/ddh207 full-text PDF

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2003

Lopez R.*, Duggan K.*, Harte N.* and Kibria A.* (2003)
Public services from the European Bioinformatics Institute.
Briefings in Bioinformatics 4: 332-340.
PMID: 14725346 Abstract DOI: 10.1093/bib/4.4.332 full-text PDF

Lopez R.*, Robinson S.*, Kibria A.*, Harte N.*, Patel G.*, Harper R.*, Quevillon E.*, Silventoinen V.*, Kallio K. and Jokinen P. (2003)
The European Bioinformatics Institute web site: a new view.
Bioinformatics 19: 546-547.
PMID: 12611814 Abstract DOI: 10.1093/bioinformatics/btg022 full-text PDF

Lopez R.*, Silventoinen V.*, Robinson S.*, Kibria A.* and Gish W. (2003)
WU-BLAST2 server at the European Bioinformatics Institute.
Nucleic Acids Research 31: 3795-3798.
PMID: 12824421 Abstract DOI: 10.1093/nar/gkg573 full-text PDF

Stoesser G., Baker W., van den Broek A., Garcia-Pastor M., Kanz C., Kulikova T., Leinonen R., Lin Q., Lombard V., Lopez R.*, Mancuso R., Nardone F., Stoehr P., Tuli M., A., Tzouvara K. and Vaughan R. (2003)
The EMBL Nucleotide Sequence Database: major new developments.
Nucleic Acids Research 31(1): 17-22.
PMID: 12519939 Abstract DOI: 10.1093/nar/gkg021 full-text PDF

Brooksbank C., Camon E., Harris M A., Magrane M., Martin M.J., Mulder N., O'Donovan C., Parkinson H., Tuli M.A., Apweiler R., Birney E., Brazma A., Henrick K., Lopez R.*, Stoesser G., Stoehr P. and Cameron G. (2003)
The European Bioinformatics Institute's data resources.
Nucleic Acids Research 31(1): 43-50.
PMID: 12519944 Abstract DOI: 10.1093/nar/gkg066 full-text PDF

Mulder N., J., Apweiler R., Attwood T.K., Bairoch A., Barrell D., Bateman A., Binns D., Biswas M., Bradley P., Bork P., Bucher P., Copley R.R., Courcelle E., Das U., Durbin R., Falquet L., Fleischmann W., Griffiths-Jones S., Haft D., Harte N.*, Hulo N., Kahn D., Kanapin A., Krestyaninova M., Lopez R.*, Letunic I., Lonsdale D., Silventoinen V.*, Orchard S. E., Pagni M., Peyruc D., Ponting C.P., Selengut J., D., Servant F., Sigrist C.J.A., Vaughan R. and Zdobnov E.M. (2003)
The InterPro Database 2003 brings increased coverage and new features.
Nucleic Acids Research 31(1): 315-318.
PMID: 12520011 Abstract DOI: 10.1093/nar/gkg046 full-text PDF

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2002


Stoesser G., Baker W., van den Broek A., Camon E., Garcia-Pastor M., Kanz C., Kulikova T., Leinonen R., Lin Q., Lombard V., Lopez R.*, Redaschi N., Stoehr P., Tuli M.A., Tzouvara K. and Vaughan R. (2002)
The EMBL Nucleotide Sequence Database.
Nucleic Acids Research 30(1): 21-26.
PMID: 11752244 Abstract DOI: 10.1093/nar/30.1.21 full-text PDF

Zdobnov E.M., Lopez R.*, Apweiler R. and Etzold T. (2002)
The EBI SRS server--recent developments.
Bioinformatics 18(2): 368-373.
PMID: 11847095 Abstract DOI: 10.1093/bioinformatics/18.2.368 full-text PDF

Zdobnov E.M., Lopez R.*, Apweiler R. and Etzold T. (2002)
The EBI SRS server--new features.
Bioinformatics 18(8): 1149-1150.
PMID: 12176845 Abstract DOI: /10.1093/bioinformatics/18.8.1149 full-text PDF

Mulder N.J., Apweiler R., Attwood T. K., Bairoch A., Bateman A., Binns D., Biswas M., Bradley P., Bork P., Bucher P., Copley R., Courcelle E., Durbin R., Falquet L., Fleischmann W., Gouzy J., Griffith-Jones S., Haft D., Hermjakob H., Hulo N., Kahn D., Kanapin A., Krestyaninova M., Lopez R.*, Letunic I., Orchard S., Pagni M., Peyruc D., Ponting C.P., Servant F. and Sigrist C.J.A. (2002)
InterPro: an integrated documentation resource for protein families domains and functional sites.,
Briefings in Bioinformics 3(3): 225-235.
PMID: 12230031 Abstract DOI: 10.1093/bib/3.3.225 full-text PDF

N.B. * denotes ES team members.

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