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Collapse MicroCosm Targets
MicroCosm Targets is an online resource for microRNA target prediction for metazoa
more
Collapse Sylamer
Sylamer is a new tool for analysis of word enrichment in ordered genelists. It is appropriate for assessing miRNA or siRNA effects in gene-expression data. more
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EBIGroupsEnright GroupSoftware

Enright Group : Software & Databases




Software and Databses

The lab is actively involved in the development of algorithms and databases in collaboration with other labs and institutes. This page lists a number of software and database projects with which we are involved, and their home-pages.



Software
Name Description Binary Source GPL Implementation
BioLayout Biological Network Visualisation and Analysis Java 1.4
BioLayout Express 3D Biological Network Visualisation and Analysis Java 1.5, OpenGL
CAST Low-complexity sequence filter ANSI C
GeneRAGE Protein Sequence Clustering and Domain Decomposition ANSI C
miRanda MicroRNA Target Detection in 3' UTRs gcc/autoconf
MCL Markov Clustering gcc/autoconf
Sylamer Analysis of enrichment or depletion of motifs and words in ordered genelists gcc/autoconf (Java 1.5 GUI)
 
Databases & Webservices
Name Description URL
MicroCosm Targets microRNA Sequences, Registry and Targets http://www.ebi.ac.uk/enright-srv/microcosm/htdocs/targets/
SylArray Automated online analysis of miRNA seed enrichment http://www.ebi.ac.uk/enright-srv/sylarray
MapMi Automated mapping and analysis of miRNA sequences across genomes http://www.ebi.ac.uk/enright-srv/MapMi



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