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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Gasterosteus aculeatus and xtr-miR-98

691 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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YOD1 ENSGACT00000006146 Ubiquitin thioesterase OTU1 (EC 3.1.2.-) (OTU domain-containing protein 2) (HIV-1-induced protease 7) (HIN-7) (HsHIN7). [Source:Uniprot/SWISSPROT;Acc:Q5VVQ6]
16.7931 -15.96 0.000000000000717061 500 4 3 9 [+] picture button
LIN28B ENSGACT00000012454 Lin-28 homolog B. [Source:Uniprot/SWISSPROT;Acc:Q6ZN17]
16.7386 -16.97 0.0000000659807 500 4 4 6 [+] picture button
RCN1 ENSGACT00000021191 Reticulocalbin-1 precursor. [Source:Uniprot/SWISSPROT;Acc:Q15293]
16.2882 -21.91 0.000000329349 500 6 3 9 [+] picture button
TARBP2 ENSGACT00000008823 TAR RNA-binding protein 2 (Trans-activation-responsive RNA-binding protein). [Source:Uniprot/SWISSPROT;Acc:Q15633]
16.3951 -18.51 0.000000498518 500 3 7 6 [+] picture button
ZNF644 ENSGACT00000020744 Zinc finger protein 644 (Zinc finger motif enhancer-binding protein 2) (Zep-2). [Source:Uniprot/SWISSPROT;Acc:Q9H582]
17.5467 -20.33 0.00000057765 500 3 3 5 [+] picture button
ENSGACT00000013727 NOT ANNOTATED
19.2004 -23.6 0.000001 500 11 1 3 [+] picture button
ZMYND11 ENSGACT00000023225 Zinc finger MYND domain-containing protein 11 (Adenovirus 5 E1A- binding protein) (BS69 protein). [Source:Uniprot/SWISSPROT;Acc:Q15326]
16.8392 -17.55 0.0000034975 500 1 1 3 [+] picture button
ATP2A2 (2 of 2) ENSGACT00000017795 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 (EC 3.6.3.8) (Calcium pump 2) (SERCA2) (SR Ca(2+)-ATPase 2) (Calcium-transporting ATPase sarcoplasmic reticulum type, slow twitch skeletal muscle isoform) (Endoplasmic reticulum class 1/2 Ca(2+) ATPase). [Source:Uniprot/SWISSPROT;Acc:P16615]
16.1939 -17.71 0.00000383298 500 2 9 4 [+] picture button
ENSGACT00000013200 Homolog of Brachydanio rerio "Cytoskeleton associated protein keap1. [Source:Uniprot/SPTREMBL;Acc:Q8JIM0]"Homolog of Brachydanio rerio "Cytoskeleton associated protein keap1. [Source:Uniprot/SPTREMBL;Acc:Q8JIM0]" BY ORTHOLOGY TO:SINFRUT00000165961
16.9478 -12.53 0.00000557469 470 8 3 9 [+] picture button
ENSGACT00000004652 Homolog of Homo sapiens "Collagen alpha 2(IV) chain precursor [Source:IPI;Acc:IPI00306322]"Homolog of Homo sapiens "Collagen alpha 2(IV) chain precursor [Source:IPI;Acc:IPI00306322]" BY ORTHOLOGY TO:SINFRUT00000173500
18.9669 -23.24 0.00000742132 500 10 4 10 [+] picture button
ARID3A ENSGACT00000011098 AT-rich interactive domain-containing protein 3A (ARID domain- containing protein 3A) (B-cell regulator of IgH transcription) (Bright) (E2F-binding protein 1). [Source:Uniprot/SWISSPROT;Acc:Q99856]
16.2632 -14.98 0.0000112013 500 5 3 7 [+] picture button
SKAP2 ENSGACT00000011024 Src kinase-associated phosphoprotein 2 (Src family-associated phosphoprotein 2) (Src kinase-associated phosphoprotein 55-related protein) (SKAP55 homolog) (SKAP-HOM) (SKAP-55HOM) (Src-associated adapter protein with PH and SH3 domains) (Pyk2/RAFTK-associa [Source:Uniprot/SWISSPROT;Acc:O75563]
17.3013 -17.12 0.0000137361 500 7 2 10 [+] picture button
PYGO2 ENSGACT00000005931 Pygopus homolog 2. [Source:Uniprot/SWISSPROT;Acc:Q9BRQ0]
17.7312 -20.77 0.0000147822 500 4 3 6 [+] picture button
COBLL1 ENSGACT00000007246 Cordon-bleu protein-like 1. [Source:Uniprot/SWISSPROT;Acc:Q53SF7]
16.764 -14.73 0.0000149098 500 4 1 4 [+] picture button
ENSGACT00000010601 Homolog of Paralichthys olivaceus "Vitamin D receptor b. [Source:Uniprot/SPTREMBL;Acc:Q9IB74]"Homolog of Paralichthys olivaceus "Vitamin D receptor b. [Source:Uniprot/SPTREMBL;Acc:Q9IB74]" BY ORTHOLOGY TO:SINFRUT00000182149
18.2022 -16 0.0000179584 500 4 3 7 [+] picture button
SLC45A4 (2 of 2) ENSGACT00000011827 solute carrier family 45, member 4 [Source:RefSeq_peptide;Acc:NP_001073900]
16.8715 -16.88 0.0000181444 500 7 3 14 [+] picture button
SLC9A6 (1 of 2) ENSGACT00000022872 Sodium/hydrogen exchanger 6 (Na(+)/H(+) exchanger 6) (NHE-6) (Solute carrier family 9 member 6). [Source:Uniprot/SWISSPROT;Acc:Q92581]
16.5658 -16.42 0.0000184108 500 6 4 7 [+] picture button
IL12RB2 (1 of 2) ENSGACT00000019204 Interleukin-12 receptor beta-2 chain precursor (IL-12 receptor beta-2) (IL-12R-beta2). [Source:Uniprot/SWISSPROT;Acc:Q99665]
17.3314 -19.1 0.0000216193 500 1 1 2 [+] picture button
RDX ENSGACT00000019699 Radixin. [Source:Uniprot/SWISSPROT;Acc:P35241]
16.8569 -18.94 0.0000334259 500 8 2 9 [+] picture button
GPR18 ENSGACT00000002457 N-arachidonyl glycine receptor (NAGly receptor) (G-protein coupled receptor 18). [Source:Uniprot/SWISSPROT;Acc:Q14330]
16.9789 -18.47 0.0000342225 500 5 3 10 [+] picture button
ENSGACT00000015079 Protein four-jointed. [Source:Uniprot/SWISSPROT;Acc:P54360]Protein four-jointed. [Source:Uniprot/SWISSPROT;Acc:P54360] BY ORTHOLOGY TO:CG10917-RA
16.5491 -20.03 0.0000446103 500 5 4 6 [+] picture button
PIF1 ENSGACT00000020626 Uncharacterized protein C15orf20. [Source:Uniprot/SWISSPROT;Acc:Q9H611]
17.5103 -20.34 0.0000489896 249 9 4 16 [+] picture button
NP_443416.1 ENSGACT00000027733 ATP synthase F0 subunit 6 [Source:RefSeq_peptide;Acc:NP_443416]
16.3466 -11.76 0.0000513284 500 6 5 7 [+] picture button
FH ENSGACT00000015099 Fumarate hydratase, mitochondrial precursor (EC 4.2.1.2) (Fumarase). [Source:Uniprot/SWISSPROT;Acc:P07954]
18.0535 -19.3 0.0000542034 500 4 2 4 [+] picture button
C1orf96 (1 of 2) ENSGACT00000021371 Uncharacterized protein C1orf96. [Source:Uniprot/SWISSPROT;Acc:Q6IQ19]
17.3013 -13.51 0.0000573402 500 6 1 8 [+] picture button
KIAA0274 ENSGACT00000015251 SAC domain-containing protein 3. [Source:Uniprot/SWISSPROT;Acc:Q92562]
16.9921 -17.46 0.0000573754 310 6 1 13 [+] picture button
GTF2E1 ENSGACT00000009859 Transcription initiation factor IIE subunit alpha (TFIIE-alpha) (General transcription factor IIE subunit 1) (General transcription factor IIE 56 kDa subunit). [Source:Uniprot/SWISSPROT;Acc:P29083]
16.1227 -18.58 0.0000655575 500 8 1 6 [+] picture button
TIMM17B ENSGACT00000016066 Mitochondrial import inner membrane translocase subunit Tim17-B. [Source:Uniprot/SWISSPROT;Acc:O60830]
18.1735 -19.45 0.0000661622 346 9 3 15 [+] picture button
SAMD1 (2 of 2) ENSGACT00000013837 Atherin (Sterile alpha motif domain-containing protein 1). [Source:Uniprot/SWISSPROT;Acc:Q6SPF0]
17.8417 -16.28 0.0000693647 500 7 4 9 [+] picture button
NR2F6 (2 of 2) ENSGACT00000010318 Orphan nuclear receptor EAR-2 (V-erbA-related protein EAR-2). [Source:Uniprot/SWISSPROT;Acc:P10588]
18.349 -17.48 0.0000709117 500 5 4 7 [+] picture button
C15orf29 ENSGACT00000010497 Uncharacterized protein C15orf29. [Source:Uniprot/SWISSPROT;Acc:Q9H079]
16.5876 -20.21 0.0000760914 552 8 5 10 [+] picture button
C6orf113 ENSGACT00000005909 Zinc finger protein C6orf113. [Source:Uniprot/SWISSPROT;Acc:Q96AP4]
17.0555 -13.76 0.0000766808 129 5 3 10 [+] picture button
ADRB2 (1 of 2) ENSGACT00000024447 Beta-2 adrenergic receptor (Beta-2 adrenoceptor) (Beta-2 adrenoreceptor). [Source:Uniprot/SWISSPROT;Acc:P07550]
16.4416 -17.43 0.0000805949 500 5 2 7 [+] picture button
ESR1 ENSGACT00000011530 Estrogen receptor (ER) (Estradiol receptor) (ER-alpha). [Source:Uniprot/SWISSPROT;Acc:P03372]
16.5778 -13.54 0.0000876306 500 4 2 5 [+] picture button
ALPL ENSGACT00000006060 Alkaline phosphatase, tissue-nonspecific isozyme precursor (EC 3.1.3.1) (AP-TNAP) (TNSALP) (Alkaline phosphatase liver/bone/kidney isozyme). [Source:Uniprot/SWISSPROT;Acc:P05186]
17.6086 -21.88 0.0000966617 504 5 1 6 [+] picture button
ETV2 ENSGACT00000016347 ETS translocation variant 2 (Ets-related protein 71). [Source:Uniprot/SWISSPROT;Acc:O00321]
16.8715 -15.65 0.0000995984 500 11 1 14 [+] picture button
SUSD3 (1 of 2) ENSGACT00000000099 Sushi domain-containing protein 3. [Source:Uniprot/SWISSPROT;Acc:Q96L08]
16.9054 -18.78 0.000100948 500 2 1 4 [+] picture button
ENSGACT00000006915 Homolog of Homo sapiens "PREDICTED "similar to matrilin 2 precursor [Source:IPI;Acc:IPI00145674]"Homolog of Homo sapiens "PREDICTED "similar to matrilin 2 precursor [Source:IPI;Acc:IPI00145674]" BY ORTHOLOGY TO:SINFRUT00000149192
17.7312 -19.42 0.000121848 500 2 1 5 [+] picture button
WHSC1 (2 of 2) ENSGACT00000024022 Probable histone-lysine N-methyltransferase NSD2 (EC 2.1.1.43) (Nuclear SET domain-containing protein 2) (Wolf-Hirschhorn syndrome candidate 1 protein) (Multiple myeloma SET domain-containing protein) (Protein trithorax-5). [Source:Uniprot/SWISSPROT;Acc:O96028]
16.9011 -14.25 0.000142896 500 5 4 8 [+] picture button
ENSGACT00000016736 Transcribed locus, weakly similar to XP_316821.1 Anopheles gambiae str. PEST ENSANGG00000007821 gene [Source:UniGene;Acc:Tru.1531]Transcribed locus, weakly similar to XP_316821.1 Anopheles gambiae str. PEST ENSANGG00000007821 gene [Source:UniGene;Acc:Tru.1531] BY ORTHOLOGY TO:SINFRUT00000135099
18.6473 -17.63 0.000147337 218 3 3 6 [+] picture button
VGLL1 ENSGACT00000008862 Transcription cofactor vestigial-like protein 1 (Vgl-1) (Protein TONDU). [Source:Uniprot/SWISSPROT;Acc:Q99990]
18.1692 -24.65 0.000158472 500 3 1 4 [+] picture button
PDZRN3 ENSGACT00000015596 PDZ domain-containing RING finger protein 3 (Ligand of Numb-protein X 3) (Semaphorin cytoplasmic domain-associated protein 3) (Protein SEMACAP3). [Source:Uniprot/SWISSPROT;Acc:Q9UPQ7]
16.6565 -13.72 0.000161836 500 5 4 8 [+] picture button
ADCK5 ENSGACT00000011506 Uncharacterized aarF domain-containing protein kinase 5 (EC 2.7.-.-). [Source:Uniprot/SWISSPROT;Acc:Q3MIX3]
18.2685 -14.46 0.000184089 500 7 3 10 [+] picture button
ZFP36L1 ENSGACT00000014923 Butyrate response factor 1 (TIS11B protein) (EGF-response factor 1) (ERF-1). [Source:Uniprot/SWISSPROT;Acc:Q07352]
17.1692 -17.08 0.0001963 237 3 2 6 [+] picture button
STAC2 (2 of 2) ENSGACT00000008028 SH3 and cysteine-rich domain-containing protein 2 (SRC homology 3 and cysteine-rich domain protein 2) (24b2/STAC2). [Source:Uniprot/SWISSPROT;Acc:Q6ZMT1]
16.5479 -17.89 0.000224797 500 3 3 5 [+] picture button
TMEM41A (2 of 2) ENSGACT00000008026 Transmembrane protein 41A precursor. [Source:Uniprot/SWISSPROT;Acc:Q96HV5]
17.0864 -13 0.000227209 500 11 1 14 [+] picture button
STK33 ENSGACT00000020683 Serine/threonine-protein kinase 33 (EC 2.7.11.1). [Source:Uniprot/SWISSPROT;Acc:Q9BYT3]
16.9789 -13.83 0.000237045 500 5 1 7 [+] picture button
PAPOLA ENSGACT00000008157 Poly(A) polymerase alpha (EC 2.7.7.19) (PAP) (Polynucleotide adenylyltransferase alpha). [Source:Uniprot/SWISSPROT;Acc:P51003]
16.4416 -19.59 0.000243996 500 7 3 7 [+] picture button
PRPF3 ENSGACT00000015631 U4/U6 small nuclear ribonucleoprotein Prp3 (Pre-mRNA-splicing factor 3) (U4/U6 snRNP 90 kDa protein) (hPrp3). [Source:Uniprot/SWISSPROT;Acc:O43395]
16.6007 -13.7 0.000249143 262 6 4 13 [+] picture button
BEST3 ENSGACT00000019392 Bestrophin-3 (Vitelliform macular dystrophy 2-like protein 3). [Source:Uniprot/SWISSPROT;Acc:Q8N1M1]
17.1939 -18.94 0.000251804 500 4 1 5 [+] picture button

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Download table: GFF TXT
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