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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Gasterosteus aculeatus and fru-miR-9

724 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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SNX7 ENSGACT00000001210 Sorting nexin-7. [Source:Uniprot/SWISSPROT;Acc:Q9UNH6]
17.1305 -19.76 3.65027e-11 498 6 2 7 [+] picture button
SACS ENSGACT00000009117 Sacsin. [Source:Uniprot/SWISSPROT;Acc:Q9NZJ4]
17.326 -14.67 4.92256e-08 500 4 3 6 [+] picture button
ENSGACT00000015252 Homolog of Homo sapiens "Neuronal pentraxin-2 precursor [Source:IPI;Acc:IPI00026946]"Homolog of Homo sapiens "Neuronal pentraxin-2 precursor [Source:IPI;Acc:IPI00026946]" BY ORTHOLOGY TO:SINFRUT00000138761
20.0116 -25.25 1.44103e-07 500 4 3 4 [+] picture button
RAG1AP1 ENSGACT00000015926 stromal cell protein [Source:RefSeq_peptide;Acc:NP_061333]
16.3635 -16.63 2.84472e-07 500 6 2 6 [+] picture button
IGF2BP2 ENSGACT00000008004 Insulin-like growth factor 2 mRNA-binding protein 2 (IGF2 mRNA-binding protein 2) (IGF-II mRNA-binding protein 2) (IMP-2) (Hepatocellular carcinoma autoantigen p62) (VICKZ family member 2). [Source:Uniprot/SWISSPROT;Acc:Q9Y6M1]
16.7463 -19.74 4.94354e-07 500 6 10 10 [+] picture button
ACY1 ENSGACT00000002028 Aminoacylase-1 (EC 3.5.1.14) (N-acyl-L-amino-acid amidohydrolase) (ACY-1). [Source:Uniprot/SWISSPROT;Acc:Q03154]
18.7564 -20.05 6.70056e-07 419 6 3 10 [+] picture button
ENSGACT00000001344 NOT ANNOTATED
17.8608 -18.88 1e-06 500 8 1 4 [+] picture button
ESM1 ENSGACT00000021704 Endothelial cell-specific molecule 1 precursor (ESM-1 secretory protein) (ESM-1). [Source:Uniprot/SWISSPROT;Acc:Q9NQ30]
16.6843 -16.4 1.86089e-06 500 8 4 10 [+] picture button
ULK2 ENSGACT00000017924 Serine/threonine-protein kinase ULK2 (EC 2.7.11.1) (Unc-51-like kinase 2). [Source:Uniprot/SWISSPROT;Acc:Q8IYT8]
18.1868 -15.38 1.90532e-06 500 3 2 8 [+] picture button
RNF111 ENSGACT00000020902 E3 ubiquitin-protein ligase Arkadia (EC 6.3.2.-) (RING finger protein 111). [Source:Uniprot/SWISSPROT;Acc:Q6ZNA4]
17.9271 -20.74 1.96431e-06 500 8 13 14 [+] picture button
FBN1 ENSGACT00000022195 Fibrillin-1 precursor. [Source:Uniprot/SWISSPROT;Acc:P35555]
17.3283 -18.05 2.49733e-06 500 10 4 12 [+] picture button
PDSS1 ENSGACT00000006790 Decaprenyl-diphosphate synthase subunit 1 (EC 2.5.1.-) (Decaprenyl pyrophosphate synthetase subunit 1) (Trans-prenyltransferase) (TPT). [Source:Uniprot/SWISSPROT;Acc:Q5T2R2]
16.5319 -15.4 3.52732e-06 556 3 7 3 [+] picture button
ADCY6 (1 of 2) ENSGACT00000011360 Adenylate cyclase type 6 (EC 4.6.1.1) (Adenylate cyclase type VI) (ATP pyrophosphate-lyase 6) (Adenylyl cyclase 6) (Ca(2+)-inhibitable adenylyl cyclase). [Source:Uniprot/SWISSPROT;Acc:O43306]
17.5898 -14.8 4.0157e-06 500 9 4 9 [+] picture button
PFDN5 ENSGACT00000000883 Prefoldin subunit 5 (C-myc-binding protein Mm-1) (Myc modulator 1). [Source:Uniprot/SWISSPROT;Acc:Q99471]
17.3091 -12.96 7.19307e-06 186 4 1 4 [+] picture button
ENSGACT00000003238 Homolog of Brachydanio rerio "Lipocalin-type prostaglandin D synthase-like protein. [Source:Uniprot/SPTREMBL;Acc:Q8QGV5]"Homolog of Brachydanio rerio "Lipocalin-type prostaglandin D synthase-like protein. [Source:Uniprot/SPTREMBL;Acc:Q8QGV5]" BY ORTHOLOGY TO:SINFRUT00000127902
17.7616 -15.09 7.19992e-06 275 6 4 10 [+] picture button
SLC10A3 ENSGACT00000002754 P3 protein (Solute carrier family 10 member 3). [Source:Uniprot/SWISSPROT;Acc:P09131]
17.2677 -17.55 9.537e-06 500 9 8 10 [+] picture button
MYOHD1 ENSGACT00000026803 myosin head domain containing 1 isoform 1 [Source:RefSeq_peptide;Acc:NP_079385]
16.3989 -16.3 9.70567e-06 500 5 1 6 [+] picture button
ENSGACT00000004652 Homolog of Homo sapiens "Collagen alpha 2(IV) chain precursor [Source:IPI;Acc:IPI00306322]"Homolog of Homo sapiens "Collagen alpha 2(IV) chain precursor [Source:IPI;Acc:IPI00306322]" BY ORTHOLOGY TO:SINFRUT00000173500
17.6967 -23.53 1.00943e-05 500 10 4 10 [+] picture button
NOX4 ENSGACT00000010555 NADPH oxidase 4 (EC 1.6.3.-) (Kidney superoxide-producing NADPH oxidase) (KOX-1) (Renal NAD(P)H-oxidase). [Source:Uniprot/SWISSPROT;Acc:Q9NPH5]
16.3917 -22.52 1.11664e-05 500 5 2 6 [+] picture button
RNF40 ENSGACT00000011625 E3 ubiquitin-protein ligase BRE1B (EC 6.3.2.-) (BRE1-B) (RING finger protein 40) (95 kDa retinoblastoma-associated protein) (RBP95). [Source:Uniprot/SWISSPROT;Acc:O75150]
17.5354 -19.11 1.25616e-05 206 2 3 2 [+] picture button
RHOQ ENSGACT00000003388 Rho-related GTP-binding protein RhoQ precursor (Ras-related GTP- binding protein TC10). [Source:Uniprot/SWISSPROT;Acc:P17081]
18.1816 -20.94 1.3714e-05 500 5 2 6 [+] picture button
ENSGACT00000000204 NOT ANNOTATED
17.1121 -11.86 1.76503e-05 500 8 1 5 [+] picture button
CCL19 (2 of 2) ENSGACT00000018927 Small inducible cytokine A19 precursor (CCL19) (Macrophage inflammatory protein 3 beta) (MIP-3-beta) (EBI1-ligand chemokine) (ELC) (Beta chemokine exodus-3) (CK beta-11). [Source:Uniprot/SWISSPROT;Acc:Q99731]
17.8608 -17.06 1.99139e-05 500 6 2 5 [+] picture button
GRASP ENSGACT00000014325 General receptor for phosphoinositides 1-associated scaffold protein (GRP1-associated scaffold protein). [Source:Uniprot/SWISSPROT;Acc:Q7Z6J2]
18.4488 -13.02 2.80577e-05 500 3 1 3 [+] picture button
ENSGACT00000024911 Diphosphoinositol polyphosphate phosphohydrolase 2 (EC 3.6.1.52) (DIPP-2) (Diadenosine 5',5'''-P1,P6-hexaphosphate hydrolase 2) (EC 3.6.1.-) (Nucleoside diphosphate-linked moiety X motif 4) (Nudix motif 4). [Source:Uniprot/SWISSPROT;Acc:Q9NZJ9]Diphosphoinositol polyphosphate phosphohydrolase 2 (EC 3.6.1.52) (DIPP-2) (Diadenosine 5',5'''-P1,P6-hexaphosphate hydrolase 2) (EC 3.6.1.-) (Nucleoside diphosphate-linked moiety X motif 4) (Nudix motif 4). [Source:Uniprot/SWISSPROT;Acc:Q9NZJ9] BY ORTHOLOGY TO:ENSORLT00000016966
16.6764 -19.85 3.33957e-05 500 2 1 3 [+] picture button
C9orf23 ENSGACT00000003953 Alba-like protein C9orf23. [Source:Uniprot/SWISSPROT;Acc:Q8N5L8]
16.8566 -10.95 4.00369e-05 254 3 2 3 [+] picture button
C21orf6 ENSGACT00000015651 Uncharacterized protein C21orf6. [Source:Uniprot/SWISSPROT;Acc:P57060]
16.5356 -17.88 4.41634e-05 427 5 2 13 [+] picture button
SLC9A1 (2 of 2) ENSGACT00000002927 Sodium/hydrogen exchanger 1 (Na(+)/H(+) exchanger 1) (NHE-1) (Solute carrier family 9 member 1) (Na(+)/H(+) antiporter, amiloride- sensitive) (APNH). [Source:Uniprot/SWISSPROT;Acc:P19634]
17.7538 -15.03 4.5337e-05 500 8 2 9 [+] picture button
NOP5_HUMAN ENSGACT00000018229 Nucleolar protein NOP5 (Nucleolar protein 5) (NOP58). [Source:Uniprot/SWISSPROT;Acc:Q9Y2X3]
16.9255 -16.58 5.35122e-05 315 7 2 11 [+] picture button
DDX51 ENSGACT00000016242 ATP-dependent RNA helicase DDX51 (EC 3.6.1.-) (DEAD box protein 51). [Source:Uniprot/SWISSPROT;Acc:Q8N8A6]
16.7131 -20.23 5.68806e-05 500 6 1 7 [+] picture button
GBAP ENSGACT00000015707 GBA protein. [Source:Uniprot/SPTREMBL;Acc:Q9BWE2]
17.3143 -12.34 5.88919e-05 317 7 3 11 [+] picture button
ENSGACT00000017881 hypothetical protein LOC572968 [Source:RefSeq_peptide;Acc:NP_001076350]hypothetical protein LOC572968 [Source:RefSeq_peptide;Acc:NP_001076350] BY ORTHOLOGY TO:ENSDART00000058887
17.2073 -12.92 6.10963e-05 500 5 2 8 [+] picture button
NUDT13 ENSGACT00000013674 Nucleoside diphosphate-linked moiety X motif 13 (EC 3.-.-.-) (Nudix motif 13) (Protein KiSS-16). [Source:Uniprot/SWISSPROT;Acc:Q86X67]
17.3538 -19.69 6.18973e-05 500 4 1 4 [+] picture button
EML3 ENSGACT00000001035 echinoderm microtubule associated protein like 3 (EML3), mRNA [Source:RefSeq_dna;Acc:NM_153265]
17.0552 -11.27 6.70953e-05 555 2 2 2 [+] picture button
SFRS1 (2 of 2) ENSGACT00000014693 Splicing factor, arginine/serine-rich 1 (pre-mRNA-splicing factor SF2, P33 subunit) (Alternative-splicing factor 1) (ASF-1). [Source:Uniprot/SWISSPROT;Acc:Q07955]
17.0828 -15.91 6.94796e-05 500 4 2 6 [+] picture button
FAM83D ENSGACT00000013469 Protein FAM83D. [Source:Uniprot/SWISSPROT;Acc:Q9H4H8]
17.7538 -16.94 7.20287e-05 500 3 2 3 [+] picture button
ENSGACT00000007867 NOT ANNOTATED
17.5354 -11.77 7.63989e-05 292 7 1 11 [+] picture button
SYDE1 ENSGACT00000013321 synapse defective 1, Rho GTPase, homolog 1 [Source:RefSeq_peptide;Acc:NP_149014]
17.4534 -16 7.8425e-05 500 6 4 12 [+] picture button
CX3CR1 (1 of 3) ENSGACT00000008552 CX3C chemokine receptor 1 (C-X3-C CKR-1) (CX3CR1) (Fractalkine receptor) (G-protein coupled receptor 13) (V28) (Beta chemokine receptor-like 1) (CMK-BRL-1) (CMKBLR1). [Source:Uniprot/SWISSPROT;Acc:P49238]
17.3328 -22.68 8.50918e-05 500 3 1 3 [+] picture button
GLDC ENSGACT00000018178 Glycine dehydrogenase [decarboxylating], mitochondrial precursor (EC 1.4.4.2) (Glycine decarboxylase) (Glycine cleavage system P- protein). [Source:Uniprot/SWISSPROT;Acc:P23378]
17.1757 -15.89 8.53386e-05 500 4 3 6 [+] picture button
ENSGACT00000017072 Homolog of Brachydanio rerio "E74-like factor-1. [Source:Uniprot/SPTREMBL;Acc:Q9YH25]"Homolog of Brachydanio rerio "E74-like factor-1. [Source:Uniprot/SPTREMBL;Acc:Q9YH25]" BY ORTHOLOGY TO:SINFRUT00000180687
17.9879 -11.05 8.71568e-05 151 1 1 2 [+] picture button
ENSGACT00000009408 Zinc finger protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q8QGJ3]Zinc finger protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q8QGJ3] BY ORTHOLOGY TO:SINFRUT00000136987
16.4389 -17.72 9.08274e-05 500 7 2 6 [+] picture button
GFPT2 ENSGACT00000023921 Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 2 (EC 2.6.1.16) (Hexosephosphate aminotransferase 2) (D-fructose-6- phosphate amidotransferase 2) (GFAT 2) (GFAT2). [Source:Uniprot/SWISSPROT;Acc:O94808]
16.3635 -15.23 9.85685e-05 500 8 2 14 [+] picture button
EIF5A2 ENSGACT00000016729 Eukaryotic translation initiation factor 5A-2 (eIF-5A-2) (eIF-5A2) (Eukaryotic initiation factor 5A isoform 2). [Source:Uniprot/SWISSPROT;Acc:Q9GZV4]
17.471 -11.04 0.000103063 500 9 4 11 [+] picture button
CPSF2 ENSGACT00000011153 Cleavage and polyadenylation specificity factor subunit 2 (Cleavage and polyadenylation specificity factor 100 kDa subunit) (CPSF 100 kDa subunit). [Source:Uniprot/SWISSPROT;Acc:Q9P2I0]
18.7931 -24.05 0.000106024 500 3 1 7 [+] picture button
ENSGACT00000009670 synaptic vesicle proteinsynaptic vesicle protein BY ORTHOLOGY TO:AAEL005849-RA
18.2886 -22.66 0.000113955 500 5 2 5 [+] picture button
EYA2 ENSGACT00000007844 Eyes absent homolog 2 (EC 3.1.3.48). [Source:Uniprot/SWISSPROT;Acc:O00167]
17.1067 -12.81 0.000138761 500 4 4 7 [+] picture button
WNT11 ENSGACT00000026730 Protein Wnt-11 precursor. [Source:Uniprot/SWISSPROT;Acc:O96014]
17.0052 -17.29 0.000147013 500 5 2 4 [+] picture button
TDH ENSGACT00000014384 L-threonine dehydrogenase (TDH) on chromosome 8 [Source:RefSeq_dna;Acc:NR_001578]
16.6843 -15.86 0.000172664 500 4 4 5 [+] picture button
ENSGACT00000009865 sulfotransferase family, cytosolic sulfotransferase 6 [Source:RefSeq_peptide;Acc:NP_001002599]sulfotransferase family, cytosolic sulfotransferase 6 [Source:RefSeq_peptide;Acc:NP_001002599] BY ORTHOLOGY TO:ENSDART00000010068
17.3091 -20.17 0.000180849 177 3 3 3 [+] picture button

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Download table: GFF TXT
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