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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Gasterosteus aculeatus and fru-miR-27e

952 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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PDE3B ENSGACT00000020663 cGMP-inhibited 3',5'-cyclic phosphodiesterase B (EC 3.1.4.17) (Cyclic GMP-inhibited phosphodiesterase B) (CGI-PDE B) (CGIPDE1) (CGIP1). [Source:Uniprot/SWISSPROT;Acc:Q13370]
17.8219 -20.29 2.61536e-11 500 9 11 12 [+] picture button
ADORA2B ENSGACT00000026827 Adenosine A2b receptor. [Source:Uniprot/SWISSPROT;Acc:P29275]
18.0579 -23.37 8.22336e-10 500 8 4 10 [+] picture button
C1orf144 ENSGACT00000006847 putative MAPK activating protein PM20,PM21 [Source:RefSeq_peptide;Acc:NP_056424]
17.4088 -18.5 1.44108e-08 500 5 2 7 [+] picture button
DCUN1D4 ENSGACT00000018782 DCN1-like protein 4 (Defective in cullin neddylation protein 1-like protein 4) (DCUN1 domain-containing protein 4). [Source:Uniprot/SWISSPROT;Acc:Q92564]
17.2829 -16.18 3.08778e-08 500 1 5 3 [+] picture button
PPP4C ENSGACT00000007255 Serine/threonine-protein phosphatase 4 catalytic subunit (EC 3.1.3.16) (PP4C) (Pp4) (Protein phosphatase X) (PP-X). [Source:Uniprot/SWISSPROT;Acc:P60510]
18.7514 -28.58 6.46458e-08 500 7 2 12 [+] picture button
PLK2 ENSGACT00000009615 Serine/threonine-protein kinase PLK2 (EC 2.7.11.21) (Polo-like kinase 1) (PLK-2) (Serine/threonine-protein kinase SNK) (Serum-inducible kinase). [Source:Uniprot/SWISSPROT;Acc:Q9NYY3]
16.5924 -18.7 8.75135e-08 500 4 11 7 [+] picture button
ISL1 ENSGACT00000005095 Insulin gene enhancer protein ISL-1 (Islet-1). [Source:Uniprot/SWISSPROT;Acc:P61371]
17.7514 -18.37 4.03334e-07 500 4 12 7 [+] picture button
NP_835227.1 ENSGACT00000011200 RIKEN cDNA 1300010M03 gene [Source:MarkerSymbol;Acc:MGI:1915248]RIKEN cDNA 1300010M03 gene [Source:MarkerSymbol;Acc:MGI:1915248] BY ORTHOLOGY TO:ENSMUST00000017946
17.3893 -17.98 4.73513e-07 500 8 5 10 [+] picture button
SLC35F1 ENSGACT00000005290 solute carrier family 35, member F1 [Source:RefSeq_peptide;Acc:NP_001025029]
16.6565 -18.84 1.10555e-06 500 6 1 6 [+] picture button
MKNK2 ENSGACT00000010224 MAP kinase-interacting serine/threonine-protein kinase 2 (EC 2.7.11.1) (MAP kinase signal-integrating kinase 2) (Mnk2). [Source:Uniprot/SWISSPROT;Acc:Q9HBH9]
17.4467 -24.31 1.24418e-06 500 8 3 11 [+] picture button
ABCG5 ENSGACT00000014133 ATP-binding cassette sub-family G member 5 (Sterolin-1). [Source:Uniprot/SWISSPROT;Acc:Q9H222]
16.2688 -19.27 1.47557e-06 459 7 2 10 [+] picture button
NR2F2 ENSGACT00000017528 COUP transcription factor 2 (COUP-TF2) (COUP-TF II) (Apolipoprotein AI regulatory protein 1) (ARP-1). [Source:Uniprot/SWISSPROT;Acc:P24468]
17.8323 -13.3 1.99773e-06 500 4 11 4 [+] picture button
USP19 ENSGACT00000005487 Ubiquitin carboxyl-terminal hydrolase 19 (EC 3.1.2.15) (Ubiquitin thioesterase 19) (Ubiquitin-specific-processing protease 19) (Deubiquitinating enzyme 19) (Zinc finger MYND domain-containing protein 9) (Fragment). [Source:Uniprot/SWISSPROT;Acc:O94966]
16.5491 -17.09 2.94587e-06 500 7 1 13 [+] picture button
RAB20 ENSGACT00000004628 Ras-related protein Rab-20. [Source:Uniprot/SWISSPROT;Acc:Q9NX57]
16.2267 -14.58 3.6566e-06 500 7 2 6 [+] picture button
FLRT3 ENSGACT00000006049 Leucine-rich repeat transmembrane protein FLRT3 precursor (Fibronectin-like domain-containing leucine-rich transmembrane protein 3). [Source:Uniprot/SWISSPROT;Acc:Q9NZU0]
18.1828 -19.18 3.68385e-06 500 8 10 12 [+] picture button
ENSGACT00000021201 Homolog of Homo sapiens "Y+L amino acid transporter 1 [Source:IPI;Acc:IPI00549477]"Homolog of Homo sapiens "Y+L amino acid transporter 1 [Source:IPI;Acc:IPI00549477]" BY ORTHOLOGY TO:SINFRUT00000141857
16.3733 -12.66 4.77934e-06 304 6 2 6 [+] picture button
NOMO1_HUMAN ENSGACT00000025424 Nodal modulator 1 precursor (pM5). [Source:Uniprot/SWISSPROT;Acc:Q15155]
17.4536 -21.61 4.92954e-06 500 5 1 9 [+] picture button
SUCLG2 ENSGACT00000012404 Succinyl-CoA ligase [GDP-forming] beta-chain, mitochondrial precursor (EC 6.2.1.4) (Succinyl-CoA synthetase, betaG chain) (SCS-betaG) (GTP- specific succinyl-CoA synthetase subunit beta). [Source:Uniprot/SWISSPROT;Acc:Q96I99]
17.3579 -20.25 5.05813e-06 750 4 2 5 [+] picture button
SHMT1 ENSGACT00000010345 Serine hydroxymethyltransferase, cytosolic (EC 2.1.2.1) (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT). [Source:Uniprot/SWISSPROT;Acc:P34896]
18.1142 -24.79 5.14569e-06 348 7 2 15 [+] picture button
C6orf113 ENSGACT00000005909 Zinc finger protein C6orf113. [Source:Uniprot/SWISSPROT;Acc:Q96AP4]
16.2596 -12.68 5.63074e-06 129 5 3 10 [+] picture button
RFX2 ENSGACT00000010040 DNA-binding protein RFX2. [Source:Uniprot/SWISSPROT;Acc:P48378]
16.6565 -16.59 6.85886e-06 500 9 5 11 [+] picture button
MDH2 ENSGACT00000008071 Malate dehydrogenase, mitochondrial precursor (EC 1.1.1.37). [Source:Uniprot/SWISSPROT;Acc:P40926]
17.1939 -14.04 7.07817e-06 500 5 4 9 [+] picture button
MTMR10 ENSGACT00000020888 Myotubularin-related protein 10. [Source:Uniprot/SWISSPROT;Acc:Q9NXD2]
17.7312 -21.65 7.60318e-06 500 4 2 4 [+] picture button
SLC35E4 ENSGACT00000022694 solute carrier family 35, member E4 [Source:RefSeq_peptide;Acc:NP_001001479]
16.6565 -22.39 7.64024e-06 500 6 4 6 [+] picture button
DTX4 (1 of 2) ENSGACT00000025727 Protein deltex-4 (Deltex-4) (Deltex4) (RING finger protein 155). [Source:Uniprot/SWISSPROT;Acc:Q9Y2E6]
16.216 -14.48 9.41931e-06 500 6 5 11 [+] picture button
APPBP2 ENSGACT00000017948 Amyloid protein-binding protein 2 (Amyloid beta precursor protein- binding protein 2) (APP-BP2) (Protein interacting with APP tail 1). [Source:Uniprot/SWISSPROT;Acc:Q92624]
16.3504 -20.29 1.0048e-05 500 4 1 5 [+] picture button
SEC63 ENSGACT00000014730 Translocation protein SEC63 homolog. [Source:Uniprot/SWISSPROT;Acc:Q9UGP8]
16.8951 -16.54 1.03901e-05 500 3 3 5 [+] picture button
SNX21 ENSGACT00000000659 Sorting nexin-21 (Sorting nexin L) (SNX-L). [Source:Uniprot/SWISSPROT;Acc:Q969T3]
16.2086 -18.18 1.51166e-05 500 5 2 6 [+] picture button
GNA12 ENSGACT00000022121 Guanine nucleotide-binding protein alpha-12 subunit (G alpha-12). [Source:Uniprot/SWISSPROT;Acc:Q03113]
17.1247 -19.29 1.60778e-05 500 3 2 3 [+] picture button
VPS8 ENSGACT00000003044 Vacuolar protein sorting-associated protein 8 homolog. [Source:Uniprot/SWISSPROT;Acc:Q8N3P4]
17.866 -15.15 1.70282e-05 315 6 2 10 [+] picture button
YES1 (1 of 2) ENSGACT00000022603 Proto-oncogene tyrosine-protein kinase Yes (EC 2.7.10.2) (p61-Yes) (c- Yes). [Source:Uniprot/SWISSPROT;Acc:P07947]
17.4743 -22.17 1.7729e-05 500 5 3 9 [+] picture button
ENSGACT00000013993 longevity assurance homolog 1 (S. cerevisiae) [Source:MarkerSymbol;Acc:MGI:2136690]longevity assurance homolog 1 (S. cerevisiae) [Source:MarkerSymbol;Acc:MGI:2136690] BY ORTHOLOGY TO:ENSMUST00000046516
16.187 -14.85 1.983e-05 500 6 1 7 [+] picture button
DUSP10 (2 of 2) ENSGACT00000026855 Dual specificity protein phosphatase 10 (EC 3.1.3.48) (EC 3.1.3.16) (Mitogen-activated protein kinase phosphatase 5) (MAP kinase phosphatase 5) (MKP-5). [Source:Uniprot/SWISSPROT;Acc:Q9Y6W6]
16.8715 -20.38 1.99325e-05 500 9 4 11 [+] picture button
FAM76B ENSGACT00000026986 Protein FAM76B. [Source:Uniprot/SWISSPROT;Acc:Q5HYJ3]
16.4416 -18.71 2.02348e-05 500 6 3 5 [+] picture button
FAM3C ENSGACT00000026219 Protein FAM3C precursor (Protein GS3786). [Source:Uniprot/SWISSPROT;Acc:Q92520]
16.3523 -16.21 2.16159e-05 647 8 2 16 [+] picture button
PTK2 (1 of 2) ENSGACT00000009313 Focal adhesion kinase 1 (EC 2.7.10.2) (FADK 1) (pp125FAK) (Protein- tyrosine kinase 2). [Source:Uniprot/SWISSPROT;Acc:Q05397]
16.2267 -17.56 2.69887e-05 500 5 4 7 [+] picture button
DDB2 ENSGACT00000006964 DNA damage-binding protein 2 (Damage-specific DNA-binding protein 2) (DDB p48 subunit) (DDBb) (UV-damaged DNA-binding protein 2) (UV-DDB 2). [Source:Uniprot/SWISSPROT;Acc:Q92466]
16.764 -11.93 2.77634e-05 500 5 3 5 [+] picture button
Q4VQD3_GASAC ENSGACT00000012434 HoxC6 (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q4VQD3]
16.3805 -17.88 3.03546e-05 500 5 6 7 [+] picture button
KIF1B ENSGACT00000009580 Kinesin-like protein KIF1B (Klp). [Source:Uniprot/SWISSPROT;Acc:O60333]
16.4702 -17.01 3.19734e-05 500 2 6 4 [+] picture button
PTX3 ENSGACT00000009460 Pentraxin-related protein PTX3 precursor (Pentaxin-related protein PTX3) (Tumor necrosis factor-inducible protein TSG-14). [Source:Uniprot/SWISSPROT;Acc:P26022]
16.6565 -16.55 3.24521e-05 500 5 3 6 [+] picture button
SPNS3 ENSGACT00000026768 spinster homolog 3 [Source:RefSeq_peptide;Acc:NP_872344]
16.764 -16.6 3.99504e-05 500 4 1 5 [+] picture button
METTL9 ENSGACT00000020084 methyltransferase like 9 isoform 1 [Source:RefSeq_peptide;Acc:NP_057109]
17.0121 -18.64 4.36719e-05 500 8 2 9 [+] picture button
GPR157 ENSGACT00000009998 Probable G-protein coupled receptor 157. [Source:Uniprot/SWISSPROT;Acc:Q5UAW9]
17.6895 -20.05 5.17074e-05 500 7 2 13 [+] picture button
ARFGEF2 ENSGACT00000005650 Brefeldin A-inhibited guanine nucleotide-exchange protein 2 (Brefeldin A-inhibited GEP 2). [Source:Uniprot/SWISSPROT;Acc:Q9Y6D5]
16.6565 -17.77 6.00225e-05 500 4 2 4 [+] picture button
VEGFC ENSGACT00000021675 Vascular endothelial growth factor C precursor (VEGF-C) (Vascular endothelial growth factor-related protein) (VRP) (Flt4 ligand) (Flt4- L). [Source:Uniprot/SWISSPROT;Acc:P49767]
16.4061 -16.31 6.10394e-05 500 4 8 8 [+] picture button
NPEPL1 ENSGACT00000000634 Syntaxin-16 (Syn16). [Source:Uniprot/SWISSPROT;Acc:O14662]
16.8281 -15.24 6.16394e-05 107 2 3 3 [+] picture button
FAM40B ENSGACT00000025090 Protein FAM40B. [Source:Uniprot/SWISSPROT;Acc:Q9ULQ0]
16.8569 -15.75 6.17653e-05 500 8 3 11 [+] picture button
SAMD1 (2 of 2) ENSGACT00000013837 Atherin (Sterile alpha motif domain-containing protein 1). [Source:Uniprot/SWISSPROT;Acc:Q6SPF0]
18.166 -24.12 6.32037e-05 500 7 4 9 [+] picture button
SLC22A16 ENSGACT00000015349 solute carrier family 22, member 16 [Source:RefSeq_peptide;Acc:NP_149116]
17.2047 -18.4 6.46371e-05 500 5 1 6 [+] picture button
C21orf70 ENSGACT00000020150 Uncharacterized protein C21orf70. [Source:Uniprot/SWISSPROT;Acc:Q9NSI2]
16.2267 -14.03 6.58588e-05 500 4 1 5 [+] picture button

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Download table: GFF TXT
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