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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Gasterosteus aculeatus and fru-miR-27c

955 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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PDE3B ENSGACT00000020663 cGMP-inhibited 3',5'-cyclic phosphodiesterase B (EC 3.1.4.17) (Cyclic GMP-inhibited phosphodiesterase B) (CGI-PDE B) (CGIPDE1) (CGIP1). [Source:Uniprot/SWISSPROT;Acc:Q13370]
18.4705 -21.72 2.61536e-11 500 9 11 12 [+] picture button
ADORA2B ENSGACT00000026827 Adenosine A2b receptor. [Source:Uniprot/SWISSPROT;Acc:P29275]
17.6058 -18.18 8.22336e-10 500 8 4 10 [+] picture button
C1orf144 ENSGACT00000006847 putative MAPK activating protein PM20,PM21 [Source:RefSeq_peptide;Acc:NP_056424]
17.1722 -16.41 1.44108e-08 500 5 2 7 [+] picture button
DCUN1D4 ENSGACT00000018782 DCN1-like protein 4 (Defective in cullin neddylation protein 1-like protein 4) (DCUN1 domain-containing protein 4). [Source:Uniprot/SWISSPROT;Acc:Q92564]
18.7465 -20.59 3.08778e-08 500 1 5 3 [+] picture button
PPP4C ENSGACT00000007255 Serine/threonine-protein phosphatase 4 catalytic subunit (EC 3.1.3.16) (PP4C) (Pp4) (Protein phosphatase X) (PP-X). [Source:Uniprot/SWISSPROT;Acc:P60510]
17.1129 -21.43 6.46458e-08 500 7 2 12 [+] picture button
PLK2 ENSGACT00000009615 Serine/threonine-protein kinase PLK2 (EC 2.7.11.21) (Polo-like kinase 1) (PLK-2) (Serine/threonine-protein kinase SNK) (Serum-inducible kinase). [Source:Uniprot/SWISSPROT;Acc:Q9NYY3]
17.434 -18.47 8.75135e-08 500 4 11 7 [+] picture button
ISL1 ENSGACT00000005095 Insulin gene enhancer protein ISL-1 (Islet-1). [Source:Uniprot/SWISSPROT;Acc:P61371]
17.8418 -17.14 4.03334e-07 500 4 12 7 [+] picture button
NP_835227.1 ENSGACT00000011200 RIKEN cDNA 1300010M03 gene [Source:MarkerSymbol;Acc:MGI:1915248]RIKEN cDNA 1300010M03 gene [Source:MarkerSymbol;Acc:MGI:1915248] BY ORTHOLOGY TO:ENSMUST00000017946
17.5857 -21.68 4.73513e-07 500 8 5 10 [+] picture button
MKNK2 ENSGACT00000010224 MAP kinase-interacting serine/threonine-protein kinase 2 (EC 2.7.11.1) (MAP kinase signal-integrating kinase 2) (Mnk2). [Source:Uniprot/SWISSPROT;Acc:Q9HBH9]
18.5086 -21.02 1.24418e-06 500 8 3 11 [+] picture button
B4GALNT3 ENSGACT00000017188 N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N- acetylgalactosaminyltransferase 2 (EC 2.4.1.244) (NGalNAc-T2) (Beta- 1,4-N-acetylgalactosaminyltransferase III) (Beta4GalNAc-T3) (Beta4GalNAcT3). [Source:Uniprot/SWISSPROT;Acc:Q6L9W6]
16.4162 -14.85 1.32219e-06 500 6 2 8 [+] picture button
ABCG5 ENSGACT00000014133 ATP-binding cassette sub-family G member 5 (Sterolin-1). [Source:Uniprot/SWISSPROT;Acc:Q9H222]
17.0054 -18.86 1.47557e-06 459 7 2 10 [+] picture button
NR2F2 ENSGACT00000017528 COUP transcription factor 2 (COUP-TF2) (COUP-TF II) (Apolipoprotein AI regulatory protein 1) (ARP-1). [Source:Uniprot/SWISSPROT;Acc:P24468]
17.8133 -14.41 1.99773e-06 500 4 11 4 [+] picture button
FLRT3 ENSGACT00000006049 Leucine-rich repeat transmembrane protein FLRT3 precursor (Fibronectin-like domain-containing leucine-rich transmembrane protein 3). [Source:Uniprot/SWISSPROT;Acc:Q9NZU0]
18.4923 -17.33 3.68385e-06 500 8 10 12 [+] picture button
NOMO1_HUMAN ENSGACT00000025424 Nodal modulator 1 precursor (pM5). [Source:Uniprot/SWISSPROT;Acc:Q15155]
16.6704 -17.43 4.92954e-06 500 5 1 9 [+] picture button
SUCLG2 ENSGACT00000012404 Succinyl-CoA ligase [GDP-forming] beta-chain, mitochondrial precursor (EC 6.2.1.4) (Succinyl-CoA synthetase, betaG chain) (SCS-betaG) (GTP- specific succinyl-CoA synthetase subunit beta). [Source:Uniprot/SWISSPROT;Acc:Q96I99]
16.5074 -18 5.05813e-06 750 4 2 5 [+] picture button
SHMT1 ENSGACT00000010345 Serine hydroxymethyltransferase, cytosolic (EC 2.1.2.1) (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT). [Source:Uniprot/SWISSPROT;Acc:P34896]
17.7593 -19.01 5.14569e-06 348 7 2 15 [+] picture button
RFX2 ENSGACT00000010040 DNA-binding protein RFX2. [Source:Uniprot/SWISSPROT;Acc:P48378]
16.3082 -12.72 6.85886e-06 500 9 5 11 [+] picture button
MDH2 ENSGACT00000008071 Malate dehydrogenase, mitochondrial precursor (EC 1.1.1.37). [Source:Uniprot/SWISSPROT;Acc:P40926]
16.3082 -11.78 7.07817e-06 500 5 4 9 [+] picture button
MTMR10 ENSGACT00000020888 Myotubularin-related protein 10. [Source:Uniprot/SWISSPROT;Acc:Q9NXD2]
17.0642 -17.98 7.60318e-06 500 4 2 4 [+] picture button
MTA3 ENSGACT00000003662 Metastasis-associated protein MTA3. [Source:Uniprot/SWISSPROT;Acc:Q9BTC8]
16.5825 -15.12 8.07657e-06 500 5 1 4 [+] picture button
SEC63 ENSGACT00000014730 Translocation protein SEC63 homolog. [Source:Uniprot/SWISSPROT;Acc:Q9UGP8]
17.321 -21.12 1.03901e-05 500 3 3 5 [+] picture button
GNA12 ENSGACT00000022121 Guanine nucleotide-binding protein alpha-12 subunit (G alpha-12). [Source:Uniprot/SWISSPROT;Acc:Q03113]
17.4333 -19.43 1.60778e-05 500 3 2 3 [+] picture button
VPS8 ENSGACT00000003044 Vacuolar protein sorting-associated protein 8 homolog. [Source:Uniprot/SWISSPROT;Acc:Q8N3P4]
18.0741 -15.15 1.70282e-05 315 6 2 10 [+] picture button
YES1 (1 of 2) ENSGACT00000022603 Proto-oncogene tyrosine-protein kinase Yes (EC 2.7.10.2) (p61-Yes) (c- Yes). [Source:Uniprot/SWISSPROT;Acc:P07947]
17.4539 -17.09 1.7729e-05 500 5 3 9 [+] picture button
ENSGACT00000013993 longevity assurance homolog 1 (S. cerevisiae) [Source:MarkerSymbol;Acc:MGI:2136690]longevity assurance homolog 1 (S. cerevisiae) [Source:MarkerSymbol;Acc:MGI:2136690] BY ORTHOLOGY TO:ENSMUST00000046516
16.5996 -15.68 1.983e-05 500 6 1 7 [+] picture button
DUSP10 (2 of 2) ENSGACT00000026855 Dual specificity protein phosphatase 10 (EC 3.1.3.48) (EC 3.1.3.16) (Mitogen-activated protein kinase phosphatase 5) (MAP kinase phosphatase 5) (MKP-5). [Source:Uniprot/SWISSPROT;Acc:Q9Y6W6]
17.9282 -17.21 1.99325e-05 500 9 4 11 [+] picture button
FAM76B ENSGACT00000026986 Protein FAM76B. [Source:Uniprot/SWISSPROT;Acc:Q5HYJ3]
17.1722 -16.62 2.02348e-05 500 6 3 5 [+] picture button
HDAC5 ENSGACT00000006971 Histone deacetylase 5 (HD5) (Antigen NY-CO-9). [Source:Uniprot/SWISSPROT;Acc:Q9UQL6]
16.2973 -25.33 2.11621e-05 500 5 1 4 [+] picture button
FAM3C ENSGACT00000026219 Protein FAM3C precursor (Protein GS3786). [Source:Uniprot/SWISSPROT;Acc:Q92520]
16.4324 -15.19 2.16159e-05 647 8 2 16 [+] picture button
PTK2 (1 of 2) ENSGACT00000009313 Focal adhesion kinase 1 (EC 2.7.10.2) (FADK 1) (pp125FAK) (Protein- tyrosine kinase 2). [Source:Uniprot/SWISSPROT;Acc:Q05397]
17.1722 -20.1 2.69887e-05 500 5 4 7 [+] picture button
DDB2 ENSGACT00000006964 DNA damage-binding protein 2 (Damage-specific DNA-binding protein 2) (DDB p48 subunit) (DDBb) (UV-damaged DNA-binding protein 2) (UV-DDB 2). [Source:Uniprot/SWISSPROT;Acc:Q92466]
16.3082 -13.05 2.77634e-05 500 5 3 5 [+] picture button
MPP1 ENSGACT00000026869 55 kDa erythrocyte membrane protein (p55) (Membrane protein, palmitoylated 1). [Source:Uniprot/SWISSPROT;Acc:Q00013]
16.2282 -17.74 2.89612e-05 600 7 4 11 [+] picture button
Q4VQD3_GASAC ENSGACT00000012434 HoxC6 (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q4VQD3]
17.0046 -16.46 3.03546e-05 500 5 6 7 [+] picture button
KIF1B ENSGACT00000009580 Kinesin-like protein KIF1B (Klp). [Source:Uniprot/SWISSPROT;Acc:O60333]
16.8804 -18.11 3.19734e-05 500 2 6 4 [+] picture button
SPNS3 ENSGACT00000026768 spinster homolog 3 [Source:RefSeq_peptide;Acc:NP_872344]
17.2802 -17.19 3.99504e-05 500 4 1 5 [+] picture button
METTL9 ENSGACT00000020084 methyltransferase like 9 isoform 1 [Source:RefSeq_peptide;Acc:NP_057109]
16.4485 -20.28 4.36719e-05 500 8 2 9 [+] picture button
STS1_HUMAN (2 of 2) ENSGACT00000027050 Suppressor of T-cell receptor signaling 1 (Sts-1) (Cbl-interacting protein p70). [Source:Uniprot/SWISSPROT;Acc:Q8TF42]
16.4162 -14.65 5.11847e-05 500 3 2 5 [+] picture button
GPR157 ENSGACT00000009998 Probable G-protein coupled receptor 157. [Source:Uniprot/SWISSPROT;Acc:Q5UAW9]
17.4534 -15.59 5.17074e-05 500 7 2 13 [+] picture button
C10orf58 ENSGACT00000010631 Uncharacterized protein C10orf58 precursor. [Source:Uniprot/SWISSPROT;Acc:Q9BRX8]
16.9858 -18.14 5.75063e-05 500 9 1 10 [+] picture button
ATPBD3 ENSGACT00000016903 ATP-binding domain protein 3 (Cancer-associated gene protein). [Source:Uniprot/SWISSPROT;Acc:Q7Z7A3]
16.6322 -19.46 5.84085e-05 500 9 4 10 [+] picture button
ARFGEF2 ENSGACT00000005650 Brefeldin A-inhibited guanine nucleotide-exchange protein 2 (Brefeldin A-inhibited GEP 2). [Source:Uniprot/SWISSPROT;Acc:Q9Y6D5]
16.7402 -18.97 6.00225e-05 500 4 2 4 [+] picture button
NPEPL1 ENSGACT00000000634 Syntaxin-16 (Syn16). [Source:Uniprot/SWISSPROT;Acc:O14662]
17.832 -16.67 6.16394e-05 107 2 3 3 [+] picture button
FAM40B ENSGACT00000025090 Protein FAM40B. [Source:Uniprot/SWISSPROT;Acc:Q9ULQ0]
17.8109 -18.67 6.17653e-05 500 8 3 11 [+] picture button
GLMN (1 of 2) ENSGACT00000020734 Glomulin (FKBP-associated protein) (FK506-binding protein-associated protein) (FAP). [Source:Uniprot/SWISSPROT;Acc:Q92990]
16.3082 -18.68 6.22497e-05 500 8 1 10 [+] picture button
SAMD1 (2 of 2) ENSGACT00000013837 Atherin (Sterile alpha motif domain-containing protein 1). [Source:Uniprot/SWISSPROT;Acc:Q6SPF0]
18.0405 -20.8 6.32037e-05 500 7 4 9 [+] picture button
SLC22A16 ENSGACT00000015349 solute carrier family 22, member 16 [Source:RefSeq_peptide;Acc:NP_149116]
16.4217 -16.1 6.46371e-05 500 5 1 6 [+] picture button
SAG (1 of 2) ENSGACT00000020860 S-arrestin (Retinal S-antigen) (48 kDa protein) (S-AG) (Rod photoreceptor arrestin). [Source:Uniprot/SWISSPROT;Acc:P10523]
16.4162 -20.88 6.88608e-05 500 7 2 8 [+] picture button
BHLHB2 (1 of 2) ENSGACT00000015850 Class B basic helix-loop-helix protein 2 (bHLHB2) (Differentially expressed in chondrocytes protein 1) (DEC1) (Enhancer-of-split and hairy-related protein 2) (SHARP-2) (Stimulated by retinoic acid gene 13 protein). [Source:Uniprot/SWISSPROT;Acc:O14503]
16.6744 -19.1 7.03837e-05 500 5 4 6 [+] picture button
SPSB3 ENSGACT00000017302 SPRY domain-containing SOCS box protein 3 (SSB-3). [Source:Uniprot/SWISSPROT;Acc:Q6PJ21]
16.3082 -11.67 7.19822e-05 500 7 1 10 [+] picture button
PEMT ENSGACT00000007388 Phosphatidylethanolamine N-methyltransferase (EC 2.1.1.17) (PEAMT) (PEMT) (PEMT2). [Source:Uniprot/SWISSPROT;Acc:Q9UBM1]
18.9003 -20.86 7.21271e-05 500 6 2 10 [+] picture button

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Download table: GFF TXT
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