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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Gasterosteus aculeatus and fru-miR-194

802 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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DDEF1 ENSGACT00000006022 130 kDa phosphatidylinositol 4,5-biphosphate-dependent ARF1 GTPase- activating protein (PIP2-dependent ARF1 GAP) (ADP-ribosylation factor- directed GTPase-activating protein 1) (ARF GTPase-activating protein 1) (Development and differentiation-enhancing f [Source:Uniprot/SWISSPROT;Acc:Q9ULH1]
16.9247 -15.53 5.3993e-10 513 7 6 13 [+] picture button
TMEM91 ENSGACT00000017230 Transmembrane protein 91. [Source:Uniprot/SWISSPROT;Acc:Q6ZNR0]
16.131 -14.19 6.94665e-10 489 6 3 10 [+] picture button
PDHB ENSGACT00000005219 Pyruvate dehydrogenase E1 component subunit beta, mitochondrial precursor (EC 1.2.4.1) (PDHE1-B). [Source:Uniprot/SWISSPROT;Acc:P11177]
16.6347 -13.45 2.19066e-09 598 5 1 5 [+] picture button
SOX5 ENSGACT00000025274 Transcription factor SOX-5. [Source:Uniprot/SWISSPROT;Acc:P35711]
16.4642 -16.11 1.33562e-07 500 4 10 6 [+] picture button
RABAC1 ENSGACT00000012566 Prenylated Rab acceptor protein 1 (PRA1 family protein 1). [Source:Uniprot/SWISSPROT;Acc:Q9UI14]
17.7177 -14.96 3.90638e-07 213 4 1 8 [+] picture button
TRIM23 ENSGACT00000020806 GTP-binding protein ARD-1 (ADP-ribosylation factor domain protein 1) (Tripartite motif-containing protein 23) (RING finger protein 46). [Source:Uniprot/SWISSPROT;Acc:P36406]
17.9955 -21.88 5.80988e-07 500 3 1 4 [+] picture button
DYNC2H1 ENSGACT00000010755 dynein, cytoplasmic, heavy polypeptide 2 [Source:RefSeq_peptide;Acc:NP_001073932]
15.6602 -19.49 6.87159e-07 500 5 2 7 [+] picture button
DEPDC1B ENSGACT00000007328 DEP domain-containing protein 1B (HBxAg-transactivated protein 8). [Source:Uniprot/SWISSPROT;Acc:Q8WUY9]
16.0922 -17.28 1.32047e-06 500 9 4 14 [+] picture button
ANKRD46 ENSGACT00000024874 Ankyrin repeat domain-containing protein 46 (Ankyrin repeat small protein) (ANK-S). [Source:Uniprot/SWISSPROT;Acc:Q86W74]
16.0263 -12.32 1.75219e-06 500 7 2 8 [+] picture button
ENSGACT00000013902 Transcribed locus, weakly similar to NP_079904.1 cytochrome c oxidase, subunit VIb polypeptide 1 [Mus musculus] [Source:UniGene;Acc:Tru.2311]Transcribed locus, weakly similar to NP_079904.1 cytochrome c oxidase, subunit VIb polypeptide 1 [Mus musculus] [Source:UniGene;Acc:Tru.2311] BY ORTHOLOGY TO:SINFRUT00000181008
16.3082 -13.85 2.4525e-06 500 5 3 5 [+] picture button
MIB2 ENSGACT00000006909 E3 ubiquitin-protein ligase MIB2 (EC 6.3.2.-) (Mind bomb homolog 2) (Zinc finger ZZ type with ankyrin repeat domain protein 1) (Skeletrophin) (Novelzin) (Novel zinc finger protein) (Putative NF- kappa-B-activating protein 002N). [Source:Uniprot/SWISSPROT;Acc:Q96AX9]
17.7104 -16.24 2.65026e-06 500 4 4 8 [+] picture button
SMC3 ENSGACT00000024780 Structural maintenance of chromosomes protein 3 (Chondroitin sulfate proteoglycan 6) (Chromosome-associated polypeptide) (hCAP) (Bamacan) (Basement membrane-associated chondroitin proteoglycan). [Source:Uniprot/SWISSPROT;Acc:Q9UQE7]
16.3367 -19.83 2.93655e-06 500 4 1 5 [+] picture button
ACAT1 ENSGACT00000026716 Acetyl-CoA acetyltransferase, mitochondrial precursor (EC 2.3.1.9) (Acetoacetyl-CoA thiolase) (T2). [Source:Uniprot/SWISSPROT;Acc:P24752]
16.5746 -12.37 4.21805e-06 254 5 3 5 [+] picture button
MTHFD2 ENSGACT00000011001 Bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial precursor [Includes: NAD-dependent methylenetetrahydrofolate dehydrogenase (EC 1.5.1.15); Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9)]. [Source:Uniprot/SWISSPROT;Acc:P13995]
15.9251 -12.89 5.52899e-06 515 9 4 9 [+] picture button
COX19 ENSGACT00000007464 Cytochrome c oxidase assembly protein COX19 (hCOX19). [Source:Uniprot/SWISSPROT;Acc:Q49B96]
15.7682 -23.99 7.55258e-06 500 5 2 6 [+] picture button
ENSGACT00000000971 Homolog of Gallus gallus "Vasotocin VT1 receptor. [Source:Uniprot/SPTREMBL;Acc:Q9PTN7]"Homolog of Gallus gallus "Vasotocin VT1 receptor. [Source:Uniprot/SPTREMBL;Acc:Q9PTN7]" BY ORTHOLOGY TO:SINFRUT00000156712
16.7023 -12.37 8.54251e-06 484 3 1 4 [+] picture button
FAM69B ENSGACT00000021043 family with sequence similarity 69, member B (FAM69B), mRNA [Source:RefSeq_dna;Acc:NM_152421]
15.6602 -11.69 1.40064e-05 500 9 1 12 [+] picture button
HK2 ENSGACT00000017451 Hexokinase-2 (EC 2.7.1.1) (Hexokinase type II) (HK II) (Muscle form hexokinase). [Source:Uniprot/SWISSPROT;Acc:P52789]
16.7531 -16.21 1.5832e-05 543 7 2 7 [+] picture button
DHTKD1 ENSGACT00000005915 dehydrogenase E1 and transketolase domain containing protein 1 [Source:RefSeq_peptide;Acc:NP_061176]
16.4066 -20.79 1.74769e-05 500 2 1 2 [+] picture button
TMEM54 (1 of 2) ENSGACT00000009569 Transmembrane protein 54 (Beta-casein-like protein) (Protein CAC-1). [Source:Uniprot/SWISSPROT;Acc:Q969K7]
16.9176 -14.81 2.02865e-05 212 2 3 3 [+] picture button
Q659G3_HUMAN ENSGACT00000005416 SRP9 protein. [Source:Uniprot/SPTREMBL;Acc:Q6P2S0]
16.6163 -15.74 2.28172e-05 500 4 1 4 [+] picture button
C8B ENSGACT00000021594 Complement component C8 beta chain precursor (Complement component 8 subunit beta). [Source:Uniprot/SWISSPROT;Acc:P07358]
16.3367 -11.95 2.40893e-05 500 6 3 7 [+] picture button
PPP1R3E ENSGACT00000018765 Homeobox and leucine zipper protein Homez (Homeodomain leucine zipper- containing factor). [Source:Uniprot/SWISSPROT;Acc:Q8IX15]
16.2356 -13.2 2.4916e-05 500 4 4 6 [+] picture button
ENSGACT00000007247 hypothetical protein LOC431729 [Source:RefSeq_peptide;Acc:NP_001002182]hypothetical protein LOC431729 [Source:RefSeq_peptide;Acc:NP_001002182] BY ORTHOLOGY TO:ENSDART00000017307
16.7009 -16.56 3.02377e-05 427 8 3 13 [+] picture button
UBLCP1 ENSGACT00000027102 Ubiquitin-like domain-containing CTD phosphatase 1 (EC 3.1.3.16). [Source:Uniprot/SWISSPROT;Acc:Q8WVY7]
17.3452 -18.42 3.03626e-05 362 5 1 5 [+] picture button
ITFG2 ENSGACT00000026535 integrin alpha FG-GAP repeat containing 2 [Source:RefSeq_peptide;Acc:NP_060933]
18.1084 -23.03 3.16359e-05 500 2 1 4 [+] picture button
PACSIN2 ENSGACT00000026287 Protein kinase C and casein kinase substrate in neurons protein 2. [Source:Uniprot/SWISSPROT;Acc:Q9UNF0]
16.2002 -16.63 3.25276e-05 500 5 2 5 [+] picture button
FBXL18 ENSGACT00000021960 F-box/LRR-repeat protein 18 (F-box and leucine-rich repeat protein 18). [Source:Uniprot/SWISSPROT;Acc:Q96ME1]
15.8916 -13.44 3.28645e-05 327 7 2 9 [+] picture button
NP_689968.1 ENSGACT00000025580 PRotein Associated with Tlr4 [Source:RefSeq_peptide;Acc:NP_689968]
17.4962 -16.92 3.57933e-05 500 5 2 9 [+] picture button
SCLY ENSGACT00000004800 selenocysteine lyase [Source:RefSeq_peptide;Acc:NP_057594]
17.0319 -11.94 3.75072e-05 186 6 2 12 [+] picture button
DEGS1 ENSGACT00000003200 degenerative spermatocyte homolog 1, lipid desaturase [Source:RefSeq_peptide;Acc:NP_659004]
16.9562 -17.72 4.65075e-05 500 5 2 6 [+] picture button
IKZF5 (1 of 2) ENSGACT00000012857 zinc finger protein, subfamily 1A, 5 [Source:RefSeq_peptide;Acc:NP_071911]
16.5862 -14.27 5.04084e-05 500 5 1 12 [+] picture button
RIC8B ENSGACT00000015683 Synembryn-B (Brain synembrin) (hSyn) (Protein Ric-8B). [Source:Uniprot/SWISSPROT;Acc:Q9NVN3]
16.0334 -12.16 6.31172e-05 500 3 1 3 [+] picture button
PYGL ENSGACT00000015885 Glycogen phosphorylase, liver form (EC 2.4.1.1). [Source:Uniprot/SWISSPROT;Acc:P06737]
16.1629 -12.59 6.40433e-05 624 7 1 10 [+] picture button
C14orf68 ENSGACT00000017103 Hepatocellular carcinoma-downregulated mitochondrial carrier protein. [Source:Uniprot/SPTREMBL;Acc:Q6Q0C1]
17.7432 -19.37 7.10407e-05 500 4 1 5 [+] picture button
BCL6 (2 of 2) ENSGACT00000021130 B-cell lymphoma 6 protein (BCL-6) (Zinc finger protein 51) (LAZ-3 protein) (BCL-5) (Zinc finger and BTB domain-containing protein 27). [Source:Uniprot/SWISSPROT;Acc:P41182]
16.4162 -13.08 7.42645e-05 500 6 4 7 [+] picture button
SEC14L1 (1 of 2) ENSGACT00000024113 SEC14-like protein 1. [Source:Uniprot/SWISSPROT;Acc:Q92503]
18.5763 -27.21 7.52562e-05 500 4 2 6 [+] picture button
NOX3 ENSGACT00000022919 NADPH oxidase 3 (EC 1.6.3.-) (gp91phox homolog 3) (GP91-3) (Mitogenic oxidase 2). [Source:Uniprot/SWISSPROT;Acc:Q9HBY0]
16.7745 -13.61 7.77043e-05 661 6 3 6 [+] picture button
HPS4 ENSGACT00000016715 Hermansky-Pudlak syndrome 4 protein (Light-ear protein homolog). [Source:Uniprot/SWISSPROT;Acc:Q9NQG7]
15.7682 -15.81 7.77889e-05 500 7 2 9 [+] picture button
CCDC49 ENSGACT00000024033 coiled-coil domain containing 49 [Source:RefSeq_peptide;Acc:NP_060218]
16.7549 -16.21 8.06309e-05 368 6 2 6 [+] picture button
DEADC1 ENSGACT00000015888 deaminase domain containing 1 [Source:RefSeq_peptide;Acc:NP_872309]
16.0469 -16.43 8.86838e-05 500 5 1 9 [+] picture button
ENSGACT00000009777 pelota homolog [Source:RefSeq_peptide;Acc:NP_001007635]pelota homolog [Source:RefSeq_peptide;Acc:NP_001007635] BY ORTHOLOGY TO:ENSRNOT00000032223
15.7745 -20.4 9.20771e-05 256 4 1 7 [+] picture button
OSMR ENSGACT00000008136 Oncostatin-M specific receptor subunit beta precursor. [Source:Uniprot/SWISSPROT;Acc:Q99650]
16.9166 -13.94 9.30518e-05 500 6 2 9 [+] picture button
NP_569736.1 (1 of 2) ENSGACT00000013931 Jun dimerization protein [Source:RefSeq_peptide;Acc:NP_569736]
17.2945 -15.88 0.000100602 500 3 3 4 [+] picture button
C6orf137 (2 of 2) ENSGACT00000016901 Uncharacterized protein C6orf137 (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q5T9V7]
17.1722 -14.38 0.000110457 500 6 3 7 [+] picture button
CHGUT_HUMAN ENSGACT00000006082 Chondroitin sulfate glucuronyltransferase (EC 2.4.1.226) (N- acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase) (Chondroitin glucuronyltransferase II) (CSGlcA-T). [Source:Uniprot/SWISSPROT;Acc:Q9P2E5]
18.0363 -14.74 0.000115443 500 4 1 4 [+] picture button
BPGM ENSGACT00000005572 Bisphosphoglycerate mutase (EC 5.4.2.4) (2,3-bisphosphoglycerate mutase, erythrocyte) (2,3-bisphosphoglycerate synthase) (BPGM) (EC 5.4.2.1) (EC 3.1.3.13) (BPG-dependent PGAM). [Source:Uniprot/SWISSPROT;Acc:P07738]
16.5897 -12.96 0.000116293 535 10 3 20 [+] picture button
C9orf72 ENSGACT00000007387 Uncharacterized protein C9orf72. [Source:Uniprot/SWISSPROT;Acc:Q96LT7]
16.2194 -15.66 0.000133478 526 3 1 4 [+] picture button
ENSGACT00000000081 hypothetical protein LOC402927 [Source:RefSeq_peptide;Acc:NP_991194]hypothetical protein LOC402927 [Source:RefSeq_peptide;Acc:NP_991194] BY ORTHOLOGY TO:ENSDART00000005923
18.0117 -29.43 0.000139117 500 6 2 7 [+] picture button
CAP2 ENSGACT00000007124 Adenylyl cyclase-associated protein 2 (CAP 2). [Source:Uniprot/SWISSPROT;Acc:P40123]
16.6889 -10.38 0.000141854 293 9 3 16 [+] picture button

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Download table: GFF TXT
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