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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Gasterosteus aculeatus and fru-miR-181b

1050 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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NR6A1 ENSGACT00000004676 Orphan nuclear receptor NR6A1 (Germ cell nuclear factor) (GCNF) (Retinoid receptor-related testis-specific receptor) (RTR). [Source:Uniprot/SWISSPROT;Acc:Q15406]
19.1021 -23.05 0.000000000000199162 125 2 12 2 [+] picture button
BHLHB2 (1 of 2) ENSGACT00000015850 Class B basic helix-loop-helix protein 2 (bHLHB2) (Differentially expressed in chondrocytes protein 1) (DEC1) (Enhancer-of-split and hairy-related protein 2) (SHARP-2) (Stimulated by retinoic acid gene 13 protein). [Source:Uniprot/SWISSPROT;Acc:O14503]
18.9758 -25.11 0.000000000967426 500 5 4 6 [+] picture button
TMEM64 ENSGACT00000006138 transmembrane protein 64 [Source:RefSeq_peptide;Acc:NP_001008495]
18.0535 -17.36 0.000000016547 500 8 5 13 [+] picture button
TMED8 ENSGACT00000010294 Protein TMED8. [Source:Uniprot/SWISSPROT;Acc:Q6PL24]
16.8317 -11.25 0.00000012456 500 4 2 3 [+] picture button
BHLHB2 (2 of 2) ENSGACT00000000850 Class B basic helix-loop-helix protein 2 (bHLHB2) (Differentially expressed in chondrocytes protein 1) (DEC1) (Enhancer-of-split and hairy-related protein 2) (SHARP-2) (Stimulated by retinoic acid gene 13 protein). [Source:Uniprot/SWISSPROT;Acc:O14503]
16.8151 -12.08 0.000000130686 500 10 4 14 [+] picture button
TMED4 ENSGACT00000017479 Transmembrane emp24 domain-containing protein 4 precursor. [Source:Uniprot/SWISSPROT;Acc:Q7Z7H5]
16.7531 -19.81 0.000000374301 697 5 1 5 [+] picture button
CYSLTR1 ENSGACT00000024608 Cysteinyl leukotriene receptor 1 (CysLTR1) (Cysteinyl leukotriene D4 receptor) (LTD4 receptor) (HG55) (HMTMF81). [Source:Uniprot/SWISSPROT;Acc:Q9Y271]
16.4587 -18.04 0.000000898141 500 4 1 6 [+] picture button
IGF2BP2 ENSGACT00000008004 Insulin-like growth factor 2 mRNA-binding protein 2 (IGF2 mRNA-binding protein 2) (IGF-II mRNA-binding protein 2) (IMP-2) (Hepatocellular carcinoma autoantigen p62) (VICKZ family member 2). [Source:Uniprot/SWISSPROT;Acc:Q9Y6M1]
18.1209 -21.75 0.000000995953 500 6 10 10 [+] picture button
FBXO9 ENSGACT00000008565 F-box only protein 9 (Cross-immune reaction antigen 1) (Renal carcinoma antigen NY-REN-57). [Source:Uniprot/SWISSPROT;Acc:Q9UK97]
17.5297 -26.01 0.00000121158 333 10 4 20 [+] picture button
GAD2 ENSGACT00000006820 Glutamate decarboxylase 2 (EC 4.1.1.15) (Glutamate decarboxylase 65 kDa isoform) (GAD-65) (65 kDa glutamic acid decarboxylase). [Source:Uniprot/SWISSPROT;Acc:Q05329]
17.3314 -13.82 0.00000124709 500 6 3 9 [+] picture button
ENSGACT00000004694 nuclear receptor co-repressor/HDAC3 complex subunit [Source:RefSeq_peptide;Acc:NP_001026540]nuclear receptor co-repressor/HDAC3 complex subunit [Source:RefSeq_peptide;Acc:NP_001026540] BY ORTHOLOGY TO:ENSGALT00000001912
18.0516 -20.63 0.00000135808 500 10 5 11 [+] picture button
E2F5 ENSGACT00000022514 Transcription factor E2F5 (E2F-5). [Source:Uniprot/SWISSPROT;Acc:Q15329]
16.4416 -11.88 0.00000173311 500 9 4 13 [+] picture button
PLCL2 ENSGACT00000017253 phospholipase C-like 2 [Source:RefSeq_peptide;Acc:NP_055999]
16.4446 -14.38 0.00000282338 500 8 3 10 [+] picture button
CARS ENSGACT00000022869 Cysteinyl-tRNA synthetase, cytoplasmic (EC 6.1.1.16) (Cysteine--tRNA ligase) (CysRS). [Source:Uniprot/SWISSPROT;Acc:P49589]
16.9008 -14.2 0.00000285128 500 6 2 7 [+] picture button
PLEKHJ1 ENSGACT00000020151 pleckstrin homology domain containing, family J member 1 [Source:RefSeq_peptide;Acc:NP_060519]
16.7144 -17.64 0.00000310751 181 4 2 9 [+] picture button
FAM58B ENSGACT00000017421 similar to CG31232-PA, isoform A (LOC401218), mRNA [Source:RefSeq_dna;Acc:XR_016722]similar to CG31232-PA, isoform A (LOC401218), mRNA [Source:RefSeq_dna;Acc:XR_016722] BY ORTHOLOGY TO:ENST00000276345
16.6682 -19.5 0.00000319764 756 2 1 2 [+] picture button
SLITRK1 ENSGACT00000019856 SLIT and NTRK-like protein 1 precursor (Leucine-rich repeat-containing protein 12). [Source:Uniprot/SWISSPROT;Acc:Q96PX8]
16.8014 -16.25 0.00000336821 500 5 8 8 [+] picture button
NP_001017920.1 ENSGACT00000007646 death-associated protein-like 1 (LOC92196), mRNA [Source:RefSeq_dna;Acc:NM_001017920]
18.1675 -16.32 0.00000462288 356 9 2 18 [+] picture button
CANT1 (1 of 2) ENSGACT00000014666 Soluble calcium-activated nucleotidase 1 (EC 3.6.1.6) (SCAN-1) (Apyrase homolog) (Putative NF-kappa-B-activating protein 107) (Putative MAPK-activating protein PM09). [Source:Uniprot/SWISSPROT;Acc:Q8WVQ1]
16.6533 -11.42 0.00000656639 381 5 4 6 [+] picture button
TRADD ENSGACT00000020987 Tumor necrosis factor receptor type 1-associated DEATH domain protein (TNFR1-associated DEATH domain protein) (TNFRSF1A-associated via death domain). [Source:Uniprot/SWISSPROT;Acc:Q15628]
17.9213 -17.49 0.00000659538 500 6 2 9 [+] picture button
IKBKG ENSGACT00000017452 NF-kappa-B essential modulator (NEMO) (NF-kappa-B essential modifier) (Inhibitor of nuclear factor kappa-B kinase subunit gamma) (IkB kinase subunit gamma) (I-kappa-B kinase gamma) (IKK-gamma) (IKKG) (IkB kinase-associated protein 1) (IKKAP1) (FIP-3). [Source:Uniprot/SWISSPROT;Acc:Q9Y6K9]
17.0121 -15.37 0.000006821 500 4 3 6 [+] picture button
DNAJC10 ENSGACT00000010867 DnaJ homolog subfamily C member 10 precursor (ER-resident protein ERdj5) (Macrothioredoxin) (MTHr). [Source:Uniprot/SWISSPROT;Acc:Q8IXB1]
18.5855 -17.32 0.00000715599 407 8 1 10 [+] picture button
GLT8D4 ENSGACT00000015617 glycosyltransferase 8 domain containing 4 [Source:RefSeq_peptide;Acc:NP_001073862]
16.4416 -17.82 0.00000836148 500 7 1 9 [+] picture button
C1orf82 ENSGACT00000020726 UPF0385 protein C1orf82. [Source:Uniprot/SWISSPROT;Acc:Q8IXW5]
16.6007 -20.66 0.0000123984 165 2 3 3 [+] picture button
PPP1R15B ENSGACT00000008886 protein phosphatase 1, regulatory subunit 15B [Source:RefSeq_peptide;Acc:NP_116222]
17.517 -14.93 0.0000131212 628 5 1 8 [+] picture button
LGMN ENSGACT00000016142 Legumain precursor (EC 3.4.22.34) (Asparaginyl endopeptidase) (Protease, cysteine 1). [Source:Uniprot/SWISSPROT;Acc:Q99538]
17.0127 -17.8 0.000013188 402 7 4 14 [+] picture button
CCNB1IP1 ENSGACT00000025471 E3 ubiquitin-protein ligase CCNB1IP1 (EC 6.3.2.-) (Cyclin-B1- interacting protein 1) (Human enhancer of invasion 10). [Source:Uniprot/SWISSPROT;Acc:Q9NPC3]
16.5778 -14.17 0.0000132267 500 8 2 11 [+] picture button
MON1B ENSGACT00000001618 MON1 homolog B [Source:RefSeq_peptide;Acc:NP_055755]
17.6237 -23.5 0.0000134191 500 8 2 8 [+] picture button
CGAT2_HUMAN ENSGACT00000004336 Chondroitin beta-1,4-N-acetylgalactosaminyltransferase 2 (EC 2.4.1.174) (GalNAcT-2) (beta4GalNAcT-2). [Source:Uniprot/SWISSPROT;Acc:Q8N6G5]
17.3698 -17.81 0.0000161664 500 8 3 10 [+] picture button
VRK3 ENSGACT00000020971 Serine/threonine-protein kinase VRK3 (EC 2.7.11.1) (Vaccinia-related kinase 3). [Source:Uniprot/SWISSPROT;Acc:Q8IV63]
16.6188 -13.18 0.0000169065 586 7 1 9 [+] picture button
CALN1 (2 of 2) ENSGACT00000027171 Calneuron-1 (Calcium-binding protein CaBP8). [Source:Uniprot/SWISSPROT;Acc:Q9BXU9]
17.7312 -20.64 0.0000175029 500 6 3 12 [+] picture button
CAMSAP1L1 (2 of 2) ENSGACT00000019986 calmodulin regulated spectrin-associated protein 1-like 1 [Source:RefSeq_peptide;Acc:NP_982284]
18.8192 -26.59 0.000018461 500 8 4 10 [+] picture button
TRPA1 ENSGACT00000003674 Transient receptor potential cation channel subfamily A member 1 (Ankyrin-like with transmembrane domains protein 1) (Transformation sensitive-protein p120). [Source:Uniprot/SWISSPROT;Acc:O75762]
16.5491 -13.33 0.0000203927 500 6 2 7 [+] picture button
HOP_HUMAN ENSGACT00000022161 Homeodomain-only protein (Lung cancer-associated Y protein) (Odd homeobox protein 1) (Not expressed in choriocarcinoma protein 1). [Source:Uniprot/SWISSPROT;Acc:Q9BPY8]
17.5103 -15.17 0.0000219295 292 8 2 14 [+] picture button
CTDSPL2 (2 of 2) ENSGACT00000008355 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2 [Source:RefSeq_peptide;Acc:NP_057480]
16.6145 -14.57 0.0000241592 500 5 4 7 [+] picture button
ATM ENSGACT00000009282 Serine-protein kinase ATM (EC 2.7.11.1) (Ataxia telangiectasia mutated) (A-T, mutated). [Source:Uniprot/SWISSPROT;Acc:Q13315]
17.1226 -19.76 0.000024424 551 5 1 7 [+] picture button
PGAM5 ENSGACT00000017141 Bcl-XL-binding protein v68 [Source:RefSeq_peptide;Acc:NP_612642]
16.481 -18.37 0.0000267162 500 7 2 10 [+] picture button
PRTG (2 of 2) ENSGACT00000008069 protogenin [Source:RefSeq_peptide;Acc:NP_776175]
17.4088 -17.86 0.0000280085 500 7 2 6 [+] picture button
LYAR_HUMAN ENSGACT00000012127 Cell growth-regulating nucleolar protein. [Source:Uniprot/SWISSPROT;Acc:Q9NX58]
17.3013 -15.2 0.0000284584 500 7 3 9 [+] picture button
GLB1 ENSGACT00000023345 Beta-galactosidase-related protein precursor (Beta-galactosidase-like protein) (S-Gal) (Elastin-binding protein) (EBP). [Source:Uniprot/SWISSPROT;Acc:P16279]
17.8565 -13.63 0.0000299739 364 10 1 17 [+] picture button
E2F7 ENSGACT00000025785 E2F transcription factor 7 [Source:RefSeq_peptide;Acc:NP_976328]
16.6565 -27.31 0.000030179 500 5 2 4 [+] picture button
ADCK1 ENSGACT00000026654 Uncharacterized aarF domain-containing protein kinase 1 precursor (EC 2.7.-.-). [Source:Uniprot/SWISSPROT;Acc:Q86TW2]
17.8047 -15.2 0.0000324322 307 5 1 7 [+] picture button
BRD1 (1 of 2) ENSGACT00000025180 Bromodomain-containing protein 1 (BR140-like protein). [Source:Uniprot/SWISSPROT;Acc:O95696]
16.8311 -16.08 0.0000333381 500 3 3 4 [+] picture button
SLC25A22 ENSGACT00000007287 Mitochondrial glutamate carrier 1 (GC-1) (Glutamate/H(+) symporter 1) (Solute carrier family 25 member 22). [Source:Uniprot/SWISSPROT;Acc:Q9H936]
17.3013 -12.4 0.0000343627 500 7 4 9 [+] picture button
LONRF1 ENSGACT00000023886 LON peptidase N-terminal domain and RING finger protein 1 (RING finger protein 191). [Source:Uniprot/SWISSPROT;Acc:Q17RB8]
16.764 -17.36 0.0000345599 500 4 3 4 [+] picture button
MLLT3 ENSGACT00000001131 Protein AF-9 (ALL1 fused gene from chromosome 9 protein) (Myeloid/lymphoid or mixed-lineage leukemia translocated to chromosome 3 protein) (YEATS domain-containing protein 3). [Source:Uniprot/SWISSPROT;Acc:P42568]
17.2239 -11.9 0.0000348595 500 7 1 9 [+] picture button
WHDC1 ENSGACT00000019888 WAS protein homology region 2 domain containing 1 [Source:RefSeq_peptide;Acc:NP_001073904]
17.7168 -23.54 0.0000361956 500 4 1 4 [+] picture button
SH2B3 ENSGACT00000008333 SH2B adapter protein 3 (Lymphocyte-specific adapter protein Lnk) (Signal transduction protein Lnk) (Lymphocyte adapter protein). [Source:Uniprot/SWISSPROT;Acc:Q9UQQ2]
17.7254 -18.56 0.0000443924 500 9 1 9 [+] picture button
AK3 ENSGACT00000023129 GTP:AMP phosphotransferase mitochondrial (EC 2.7.4.10) (Adenylate kinase 3) (AK3) (Adenylate kinase 3 alpha-like 1). [Source:Uniprot/SWISSPROT;Acc:Q9UIJ7]
19.3074 -30.79 0.0000472492 500 6 2 7 [+] picture button
LIX1L ENSGACT00000005020 LIX1-like protein. [Source:Uniprot/SWISSPROT;Acc:Q8IVB5]
17.1939 -16.75 0.0000480105 500 7 3 11 [+] picture button

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Download table: GFF TXT
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