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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Gasterosteus aculeatus and fru-miR-148

826 hits found.


Page 1 of 17
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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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DYNLL2 ENSGACT00000014703 Dynein light chain 2, cytoplasmic (Dynein light chain LC8-type 2). [Source:Uniprot/SWISSPROT;Acc:Q96FJ2]
17.6124 -17.29 5.12357e-09 503 7 10 9 [+] picture button
CCDC85B ENSGACT00000022578 Delta-interacting protein A (Hepatitis delta antigen-interacting protein A) (Coiled-coil domain-containing protein 85B). [Source:Uniprot/SWISSPROT;Acc:Q15834]
19.1569 -16.77 1.09778e-08 500 10 4 17 [+] picture button
TBX3 ENSGACT00000022201 T-box transcription factor TBX3 (T-box protein 3). [Source:Uniprot/SWISSPROT;Acc:O15119]
16.8918 -17.32 1.1744e-07 500 4 4 9 [+] picture button
MEOX2 ENSGACT00000016872 Homeobox protein MOX-2 (Mesenchyme homeobox 2) (Growth arrest-specific homeobox). [Source:Uniprot/SWISSPROT;Acc:P50222]
16.9269 -16.69 1.83046e-07 500 5 10 11 [+] picture button
NIPA2 ENSGACT00000018260 Non-imprinted in Prader-Willi/Angelman syndrome region protein 2. [Source:Uniprot/SWISSPROT;Acc:Q8N8Q9]
16.4896 -15.12 2.11258e-07 472 8 10 9 [+] picture button
MTF1 ENSGACT00000018359 Metal-regulatory transcription factor 1 (Transcription factor MTF-1) (MRE-binding transcription factor). [Source:Uniprot/SWISSPROT;Acc:Q14872]
17.3287 -17.48 4.09117e-07 500 4 3 5 [+] picture button
COL4A1 ENSGACT00000004675 Collagen alpha-1(IV) chain precursor (Arresten). [Source:Uniprot/SWISSPROT;Acc:P02462]
17.6237 -17.55 4.76466e-07 500 3 4 4 [+] picture button
Q86XQ1_HUMAN ENSGACT00000017074 XTP9. [Source:Uniprot/SPTREMBL;Acc:Q86XQ1]
16.1192 -15.31 1.8953e-06 500 3 6 5 [+] picture button
BAI3 ENSGACT00000007998 Brain-specific angiogenesis inhibitor 3 precursor. [Source:Uniprot/SWISSPROT;Acc:O60242]
18.5858 -22.76 3.17357e-06 500 6 10 11 [+] picture button
LRRN1 (1 of 2) ENSGACT00000015791 Leucine-rich repeat neuronal protein 1 precursor (Neuronal leucine- rich repeat protein 1) (NLRR-1). [Source:Uniprot/SWISSPROT;Acc:Q6UXK5]
18.0916 -21.76 3.67449e-06 500 9 7 14 [+] picture button
DEPDC1B ENSGACT00000007328 DEP domain-containing protein 1B (HBxAg-transactivated protein 8). [Source:Uniprot/SWISSPROT;Acc:Q8WUY9]
17.7312 -16.83 4.09445e-06 500 9 4 14 [+] picture button
EYA2 ENSGACT00000007844 Eyes absent homolog 2 (EC 3.1.3.48). [Source:Uniprot/SWISSPROT;Acc:O00167]
18.0538 -24.1 6.01184e-06 500 4 4 7 [+] picture button
KIF18A ENSGACT00000020496 Kinesin-like protein KIF18A. [Source:Uniprot/SWISSPROT;Acc:Q8NI77]
16.764 -11.93 6.45024e-06 500 4 2 8 [+] picture button
CYR61 ENSGACT00000008888 Protein CYR61 precursor (Cysteine-rich, angiogenic inducer, 61) (Insulin-like growth factor-binding protein 10) (Protein GIG1). [Source:Uniprot/SWISSPROT;Acc:O00622]
16.764 -15.26 6.90443e-06 500 7 6 10 [+] picture button
VPS18 ENSGACT00000017182 Vacuolar protein sorting-associated protein 18 homolog (hVPS18). [Source:Uniprot/SWISSPROT;Acc:Q9P253]
17.0159 -11.73 7.00511e-06 500 7 2 11 [+] picture button
ARHGAP26 ENSGACT00000027454 Rho GTPase-activating protein 26 (Oligophrenin-1-like protein) (GTPase regulator associated with focal adhesion kinase). [Source:Uniprot/SWISSPROT;Acc:Q9UNA1]
16.764 -13.54 7.11292e-06 500 8 3 12 [+] picture button
ENSGACT00000004528 Apolipoprotein E2. [Source:Uniprot/SPTREMBL;Acc:Q5KST8]Apolipoprotein E2. [Source:Uniprot/SPTREMBL;Acc:Q5KST8] BY ORTHOLOGY TO:SINFRUT00000147954
16.9119 -15.61 7.45619e-06 500 3 4 4 [+] picture button
CASR ENSGACT00000027407 Extracellular calcium-sensing receptor precursor (CaSR) (Parathyroid Cell calcium-sensing receptor). [Source:Uniprot/SWISSPROT;Acc:P41180]
17.0864 -17.1 8.33965e-06 500 6 4 7 [+] picture button
LONRF3 ENSGACT00000024817 LON peptidase N-terminal domain and RING finger protein 3 (RING finger protein 127). [Source:Uniprot/SWISSPROT;Acc:Q496Y0]
18.2006 -22.81 1.09237e-05 500 3 3 6 [+] picture button
STYX ENSGACT00000021618 Serine/threonine/tyrosine-interacting protein (Protein tyrosine phosphatase-like protein). [Source:Uniprot/SWISSPROT;Acc:Q8WUJ0]
17.0653 -21.03 1.14822e-05 500 12 7 20 [+] picture button
EBI2 ENSGACT00000002459 EBV-induced G-protein coupled receptor 2 (EBI2). [Source:Uniprot/SWISSPROT;Acc:P32249]
16.764 -19.46 1.16319e-05 500 8 1 10 [+] picture button
EMILIN3 ENSGACT00000015978 EMILIN-3 precursor (EMILIN-5) (Elastin microfibril interface-located protein 5) (Elastin microfibril interfacer 5). [Source:Uniprot/SWISSPROT;Acc:Q9NT22]
18.7326 -21.77 1.52945e-05 500 6 4 9 [+] picture button
FGF10 (2 of 2) ENSGACT00000022877 Fibroblast growth factor 10 precursor (FGF-10) (Keratinocyte growth factor 2). [Source:Uniprot/SWISSPROT;Acc:O15520]
17.9461 -22.01 1.82493e-05 500 4 3 6 [+] picture button
PLA2R1 ENSGACT00000020062 phospholipase A2 receptor 1 isoform 1 precursor [Source:RefSeq_peptide;Acc:NP_031392]
16.7112 -22.01 1.97892e-05 500 3 2 4 [+] picture button
FAM54A ENSGACT00000014673 Protein FAM54A (DUF729 domain-containing protein 1). [Source:Uniprot/SWISSPROT;Acc:Q6P444]
16.5328 -17.11 2.23454e-05 500 4 3 5 [+] picture button
FBXO8 ENSGACT00000021712 F-box only protein 8 (F-box/SEC7 protein FBS). [Source:Uniprot/SWISSPROT;Acc:Q9NRD0]
16.9789 -19.89 2.28323e-05 500 6 2 6 [+] picture button
ATE1 ENSGACT00000004511 Arginyl-tRNA--protein transferase 1 (EC 2.3.2.8) (R-transferase 1) (Arginyltransferase 1) (Arginine-tRNA--protein transferase 1). [Source:Uniprot/SWISSPROT;Acc:O95260]
16.3342 -18.19 2.43289e-05 500 3 1 5 [+] picture button
HOXA5 ENSGACT00000009434 Homeobox protein Hox-A5 (Hox-1C). [Source:Uniprot/SWISSPROT;Acc:P20719]
18.5986 -23.47 2.53578e-05 500 5 6 7 [+] picture button
TMEM63B (2 of 2) ENSGACT00000006645 Transmembrane protein 63B. [Source:Uniprot/SWISSPROT;Acc:Q5T3F8]
17.258 -16.68 2.69743e-05 500 3 4 4 [+] picture button
TTC26 ENSGACT00000025555 tetratricopeptide repeat domain 26 [Source:RefSeq_peptide;Acc:NP_079202]
16.3733 -13.48 3.19112e-05 113 2 1 4 [+] picture button
UNC45A ENSGACT00000015258 UNC45 homolog A (UNC-45A) (Smooth muscle cell-associated protein 1) (SMAP-1). [Source:Uniprot/SWISSPROT;Acc:Q9H3U1]
17.0864 -17.52 3.37714e-05 500 7 3 9 [+] picture button
COL6A2 (1 of 2) ENSGACT00000008126 Collagen alpha-2(VI) chain precursor. [Source:Uniprot/SWISSPROT;Acc:P12110]
18.8384 -19.62 3.83542e-05 500 4 3 9 [+] picture button
ITGA11 (1 of 2) ENSGACT00000022429 Integrin alpha-11 precursor. [Source:Uniprot/SWISSPROT;Acc:Q9UKX5]
18.0171 -20.97 3.84088e-05 500 3 3 4 [+] picture button
USPL1 ENSGACT00000027216 Ubiquitin-specific peptidase-like protein 1. [Source:Uniprot/SWISSPROT;Acc:Q5W0Q7]
16.3342 -14.24 3.94405e-05 500 4 3 6 [+] picture button
KIAA0802 ENSGACT00000022012 Uncharacterized protein KIAA0802. [Source:Uniprot/SWISSPROT;Acc:Q9Y4B5]
16.7527 -18.05 4.16435e-05 500 6 2 9 [+] picture button
C9orf19 ENSGACT00000011752 Golgi-associated plant pathogenesis-related protein 1 (Golgi- associated PR-1 protein) (GAPR-1) (Glioma pathogenesis-related protein 2) (GliPR 2). [Source:Uniprot/SWISSPROT;Acc:Q9H4G4]
17.1714 -17.53 4.21463e-05 435 9 1 13 [+] picture button
SIRT4 ENSGACT00000001948 NAD-dependent deacetylase sirtuin-4 (EC 3.5.1.-) (SIR2-like protein 4). [Source:Uniprot/SWISSPROT;Acc:Q9Y6E7]
16.3625 -19.14 4.31261e-05 500 8 1 10 [+] picture button
YEATS4 ENSGACT00000026066 YEATS domain-containing protein 4 (Glioma-amplified sequence-41) (Gas41) (NuMA-binding protein 1) (NuBI-1) (NuBI1). [Source:Uniprot/SWISSPROT;Acc:O95619]
16.0501 -13.98 4.32168e-05 500 8 2 13 [+] picture button
IGF2BP2 ENSGACT00000008004 Insulin-like growth factor 2 mRNA-binding protein 2 (IGF2 mRNA-binding protein 2) (IGF-II mRNA-binding protein 2) (IMP-2) (Hepatocellular carcinoma autoantigen p62) (VICKZ family member 2). [Source:Uniprot/SWISSPROT;Acc:Q9Y6M1]
16.8266 -16.56 4.39413e-05 500 6 10 10 [+] picture button
GTF2A1 ENSGACT00000006932 Transcription initiation factor IIA subunit 1 (General transcription factor IIA1) (TFIIA-42) (TFIIAL) [Contains: Transcription initiation factor IIA alpha chain (TFIIA p35 subunit); Transcription initiation factor IIA beta chain (TFIIA p19 subunit)]. [Source:Uniprot/SWISSPROT;Acc:P52655]
17.9498 -19.6 4.67126e-05 500 3 2 5 [+] picture button
ENSGACT00000010944 Homolog of Brachydanio rerio "Noggin 2 precursor. [Source:Uniprot/SWISSPROT;Acc:Q9W740]"Homolog of Brachydanio rerio "Noggin 2 precursor. [Source:Uniprot/SWISSPROT;Acc:Q9W740]" BY ORTHOLOGY TO:SINFRUT00000163149
18.5336 -15.91 4.70854e-05 131 3 4 12 [+] picture button
PGD ENSGACT00000009553 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44). [Source:Uniprot/SWISSPROT;Acc:P52209]
16.6996 -16.22 4.72442e-05 321 6 4 13 [+] picture button
RNUXA ENSGACT00000025746 RNA U small nuclear RNA export adapter protein (Phosphorylated adapter RNA export protein). [Source:Uniprot/SWISSPROT;Acc:Q9H814]
17.0264 -17.04 5.10625e-05 706 5 1 5 [+] picture button
VEGFC ENSGACT00000021675 Vascular endothelial growth factor C precursor (VEGF-C) (Vascular endothelial growth factor-related protein) (VRP) (Flt4 ligand) (Flt4- L). [Source:Uniprot/SWISSPROT;Acc:P49767]
17.0537 -19.23 5.31151e-05 500 4 8 8 [+] picture button
NT5C1B ENSGACT00000011111 Retinol dehydrogenase 14 (EC 1.1.1.-) (Alcohol dehydrogenase PAN2). [Source:Uniprot/SWISSPROT;Acc:Q9HBH5]
16.2596 -11.98 5.34884e-05 280 6 3 10 [+] picture button
CLDN12 ENSGACT00000016301 Claudin-12. [Source:Uniprot/SWISSPROT;Acc:P56749]
16.8715 -17.45 5.38214e-05 500 7 1 9 [+] picture button
ENSGACT00000009873 cDNA sequence BC003266 [Source:MarkerSymbol;Acc:MGI:1933141]cDNA sequence BC003266 [Source:MarkerSymbol;Acc:MGI:1933141] BY ORTHOLOGY TO:ENSMUST00000046609
17.3933 -26.6 5.83904e-05 500 5 4 6 [+] picture button
HSP90AB2P ENSGACT00000017921 Heat shock protein 90Bb. [Source:Uniprot/SPTREMBL;Acc:Q58FF8]
18.1417 -17.07 6.24509e-05 428 6 4 17 [+] picture button
VPS13D ENSGACT00000016812 Vacuolar protein sorting-associated protein 13D. [Source:Uniprot/SWISSPROT;Acc:Q5THJ4]
16.5841 -16.49 6.38785e-05 624 5 2 6 [+] picture button
MFSD9 ENSGACT00000003895 major facilitator superfamily domain containing 9 [Source:RefSeq_peptide;Acc:NP_116107]
16.3697 -15.76 6.51163e-05 500 5 2 8 [+] picture button

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Download table: GFF TXT
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