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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Gasterosteus aculeatus and fru-miR-142a

576 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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PLCXD3 ENSGACT00000009165 phosphatidylinositol-specific phospholipase C, X domain containing 3 [Source:RefSeq_peptide;Acc:NP_001005473]
17.1722 -10.46 7.70292e-07 500 7 3 9 [+] picture button
GKAP1 ENSGACT00000010044 G kinase anchoring protein 1 [Source:RefSeq_peptide;Acc:NP_079487]
16.4705 -12.59 8.00344e-06 380 6 3 6 [+] picture button
DNAL1 ENSGACT00000017474 Dynein light chain 1, axonemal. [Source:Uniprot/SWISSPROT;Acc:Q4LDG9]
17.1462 -8.96 9.22506e-06 181 4 2 6 [+] picture button
CYP26A1 ENSGACT00000020316 Cytochrome P450 26A1 (EC 1.14.-.-) (Retinoic acid-metabolizing cytochrome) (P450 retinoic acid-inactivating 1) (P450RAI) (hP450RAI) (Retinoic acid 4-hydroxylase). [Source:Uniprot/SWISSPROT;Acc:O43174]
16.3687 -10.61 1.40873e-05 356 7 3 6 [+] picture button
BAI3 ENSGACT00000007998 Brain-specific angiogenesis inhibitor 3 precursor. [Source:Uniprot/SWISSPROT;Acc:O60242]
18.1367 -13.87 1.46988e-05 500 6 10 11 [+] picture button
HDAC3 ENSGACT00000024844 Histone deacetylase 3 (HD3) (RPD3-2) (SMAP45). [Source:Uniprot/SWISSPROT;Acc:O15379]
16.3054 -13.94 1.69197e-05 500 9 1 8 [+] picture button
PRR16 ENSGACT00000008321 mesenchymal stem cell protein DSC54 [Source:RefSeq_peptide;Acc:NP_057728]
20.2281 -23.52 1.75407e-05 500 4 11 6 [+] picture button
MEA1 ENSGACT00000016226 Male-enhanced antigen 1 (MEA-1). [Source:Uniprot/SWISSPROT;Acc:Q16626]
17.0963 -11.42 2.18181e-05 521 3 8 3 [+] picture button
HEXDC ENSGACT00000007014 hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing [Source:RefSeq_peptide;Acc:NP_775891]
16.5746 -6.1 3.4228e-05 95 2 1 3 [+] picture button
PTPN4 ENSGACT00000010366 Tyrosine-protein phosphatase non-receptor type 4 (EC 3.1.3.48) (Protein-tyrosine phosphatase MEG1) (PTPase-MEG1) (MEG). [Source:Uniprot/SWISSPROT;Acc:P29074]
16.6838 -10.42 4.7882e-05 500 7 4 15 [+] picture button
DBH ENSGACT00000023042 Dopamine beta-hydroxylase precursor (EC 1.14.17.1) (Dopamine beta- monooxygenase). [Source:Uniprot/SWISSPROT;Acc:P09172]
16.5242 -9.89 5.06358e-05 500 5 1 6 [+] picture button
SKAP2 ENSGACT00000011024 Src kinase-associated phosphoprotein 2 (Src family-associated phosphoprotein 2) (Src kinase-associated phosphoprotein 55-related protein) (SKAP55 homolog) (SKAP-HOM) (SKAP-55HOM) (Src-associated adapter protein with PH and SH3 domains) (Pyk2/RAFTK-associa [Source:Uniprot/SWISSPROT;Acc:O75563]
16.8482 -10.27 5.58929e-05 500 7 2 10 [+] picture button
RCCD1 ENSGACT00000015277 RCC1 domain containing 1 [Source:RefSeq_peptide;Acc:NP_291022]
16.5746 -8.79 5.67644e-05 154 4 2 4 [+] picture button
KIAA1841 ENSGACT00000003600 KIAA1841 (KIAA1841), mRNA [Source:RefSeq_dna;Acc:NM_032506]
17.8202 -11.92 5.71424e-05 500 6 3 5 [+] picture button
TSHZ3 (2 of 2) ENSGACT00000017710 Teashirt homolog 3 (Zinc finger protein 537). [Source:Uniprot/SWISSPROT;Acc:Q63HK5]
16.9344 -10.25 6.68152e-05 500 5 4 6 [+] picture button
ORC1L ENSGACT00000007211 Origin recognition complex subunit 1 (Replication control protein 1). [Source:Uniprot/SWISSPROT;Acc:Q13415]
18.6322 -10.51 7.5162e-05 195 3 1 5 [+] picture button
SYT16 ENSGACT00000014386 Synaptotagmin-16 (Synaptotagmin XIV-related protein) (Synaptotagmin 14-like protein) (Chr14Syt). [Source:Uniprot/SWISSPROT;Acc:Q17RD7]
17.0642 -8.01 8.62612e-05 500 2 1 2 [+] picture button
FAM82A ENSGACT00000003940 family with sequence similarity 82, member A (FAM82A), mRNA [Source:RefSeq_dna;Acc:NM_144713]
17.2802 -10.43 8.66409e-05 500 3 1 8 [+] picture button
RORA ENSGACT00000014150 Nuclear receptor ROR-alpha (Retinoid-related orphan receptor-alpha) (Nuclear receptor RZR-alpha). [Source:Uniprot/SWISSPROT;Acc:P35398]
16.6322 -8.36 9.34286e-05 500 7 4 10 [+] picture button
SPSB1 ENSGACT00000010002 SPRY domain-containing SOCS box protein 1 (SSB-1). [Source:Uniprot/SWISSPROT;Acc:Q96BD6]
16.3842 -7.37 0.000102375 500 3 1 3 [+] picture button
SENP7 (1 of 2) ENSGACT00000020380 Sentrin-specific protease 7 (EC 3.4.22.-) (Sentrin/SUMO-specific protease SENP7) (SUMO-1-specific protease 2). [Source:Uniprot/SWISSPROT;Acc:Q9BQF6]
17.5051 -11.83 0.000117976 396 6 1 9 [+] picture button
GOLPH4 ENSGACT00000009491 golgi phosphoprotein 4 [Source:RefSeq_peptide;Acc:NP_055313]
17.3869 -10.21 0.00012216 500 5 2 7 [+] picture button
ITK ENSGACT00000024491 Tyrosine-protein kinase ITK/TSK (EC 2.7.10.2) (T-cell-specific kinase) (Tyrosine-protein kinase Lyk) (Kinase EMT). [Source:Uniprot/SWISSPROT;Acc:Q08881]
16.4162 -10.25 0.000126248 500 8 2 14 [+] picture button
RGS1 ENSGACT00000021307 Regulator of G-protein signaling 1 (RGS1) (Early response protein 1R20) (B-cell activation protein BL34). [Source:Uniprot/SWISSPROT;Acc:Q08116]
16.3082 -9.48 0.000128453 500 5 2 11 [+] picture button
NP_001073865.1 (2 of 2) ENSGACT00000018703 similar to transmembrane protein 28 (LOC728215), mRNA [Source:RefSeq_dna;Acc:NM_001080396]
16.4558 -9.03 0.000135031 500 4 1 6 [+] picture button
MUS81 ENSGACT00000024891 Crossover junction endonuclease MUS81 (EC 3.1.22.-). [Source:Uniprot/SWISSPROT;Acc:Q96NY9]
17.4891 -10.2 0.00018485 172 3 2 10 [+] picture button
Q99543-2 ENSGACT00000025718 DNJC2_HUMAN Isoform 2 of Q99543 - Homo sapiens (Human) [Source:Uniprot/Varsplic;Acc:Q99543-2]
18.0606 -10.09 0.000203515 89 2 3 3 [+] picture button
CETN3 ENSGACT00000020543 Centrin-3. [Source:Uniprot/SWISSPROT;Acc:O15182]
16.5677 -8.92 0.000218639 500 4 1 4 [+] picture button
PGM3 ENSGACT00000017635 Phosphoacetylglucosamine mutase (EC 5.4.2.3) (PAGM) (Acetylglucosamine phosphomutase) (N-acetylglucosamine-phosphate mutase) (Phosphoglucomutase 3). [Source:Uniprot/SWISSPROT;Acc:O95394]
16.3268 -11.82 0.000245119 526 6 2 10 [+] picture button
DUSP3 ENSGACT00000008688 Dual specificity protein phosphatase 3 (EC 3.1.3.48) (EC 3.1.3.16) (Dual specificity protein phosphatase VHR). [Source:Uniprot/SWISSPROT;Acc:P51452]
17.7177 -9 0.000251779 222 5 3 7 [+] picture button
NFE2L2 ENSGACT00000005902 Nuclear factor erythroid 2-related factor 2 (NF-E2-related factor 2) (NFE2-related factor 2) (Nuclear factor, erythroid derived 2, like 2) (HEBP1). [Source:Uniprot/SWISSPROT;Acc:Q16236]
16.4359 -9.36 0.000254595 366 10 11 11 [+] picture button
ENSGACT00000023455 nodal-related 1 [Source:RefSeq_peptide;Acc:NP_571041]nodal-related 1 [Source:RefSeq_peptide;Acc:NP_571041] BY ORTHOLOGY TO:ENSDART00000079692
18.6494 -13.62 0.000312227 500 5 2 9 [+] picture button
SNRPD3 ENSGACT00000023208 Small nuclear ribonucleoprotein Sm D3 (snRNP core protein D3) (Sm-D3). [Source:Uniprot/SWISSPROT;Acc:P62318]
16.8482 -17.05 0.000320166 500 6 2 8 [+] picture button
FBXO9 ENSGACT00000008565 F-box only protein 9 (Cross-immune reaction antigen 1) (Renal carcinoma antigen NY-REN-57). [Source:Uniprot/SWISSPROT;Acc:Q9UK97]
16.944 -11.9 0.000342801 333 10 4 20 [+] picture button
HAT1 ENSGACT00000006557 Histone acetyltransferase type B catalytic subunit (EC 2.3.1.48). [Source:Uniprot/SWISSPROT;Acc:O14929]
17.1303 -16.44 0.000355612 382 7 2 9 [+] picture button
SGOL1 ENSGACT00000006598 Shugoshin-like 1 (hSgo1) (Serologically defined breast cancer antigen NY-BR-85). [Source:Uniprot/SWISSPROT;Acc:Q5FBB7]
18.2523 -16.16 0.000361853 500 8 1 12 [+] picture button
LIN7C ENSGACT00000020488 Lin-7 homolog C (Lin-7C) (Mammalian lin-seven protein 3) (MALS-3) (Vertebrate lin-7 homolog 3) (Veli-3 protein). [Source:Uniprot/SWISSPROT;Acc:Q9NUP9]
16.9288 -13.17 0.000365845 500 8 5 16 [+] picture button
XKR8_GASAC ENSGACT00000003117 XK-related protein 8. [Source:Uniprot/SWISSPROT;Acc:Q4VV71]
16.7402 -13.25 0.000368538 500 7 2 9 [+] picture button
FGF6 (2 of 2) ENSGACT00000018274 Fibroblast growth factor 6 precursor (FGF-6) (HBGF-6) (HST-2). [Source:Uniprot/SWISSPROT;Acc:P10767]
16.9562 -6.58 0.000380185 500 8 4 10 [+] picture button
NELL1 ENSGACT00000022628 Protein kinase C-binding protein NELL1 precursor (NEL-like protein 1) (Nel-related protein 1). [Source:Uniprot/SWISSPROT;Acc:Q92832]
16.7283 -16.69 0.000382591 500 5 2 14 [+] picture button
RSRC1 ENSGACT00000012226 Arginine/serine-rich coiled coil protein 1. [Source:Uniprot/SWISSPROT;Acc:Q96IZ7]
17.832 -8.26 0.000392514 183 4 1 7 [+] picture button
DYNC2LI1 ENSGACT00000014115 dynein 2 light intermediate chain isoform 1 [Source:RefSeq_peptide;Acc:NP_057092]
17.9463 -13.19 0.000398207 299 6 2 14 [+] picture button
NFKBIE ENSGACT00000017902 NF-kappa-B inhibitor epsilon (NF-kappa-BIE) (I-kappa-B-epsilon) (IkappaBepsilon) (IKB-epsilon) (IKBE). [Source:Uniprot/SWISSPROT;Acc:O00221]
16.7049 -12.6 0.000401733 410 5 1 5 [+] picture button
LCP2 ENSGACT00000027676 Lymphocyte cytosolic protein 2 (SH2 domain-containing leukocyte protein of 76 kDa) (SLP-76 tyrosine phosphoprotein) (SLP76). [Source:Uniprot/SWISSPROT;Acc:Q13094]
17.0319 -9.05 0.000413006 196 3 1 7 [+] picture button
LEO1 ENSGACT00000019830 RNA polymerase-associated protein LEO1 (Replicative senescence down- regulated leo1-like protein). [Source:Uniprot/SWISSPROT;Acc:Q8WVC0]
17.832 -6.47 0.000456069 101 2 4 3 [+] picture button
ACSL6 ENSGACT00000027657 Long-chain-fatty-acid--CoA ligase 6 (EC 6.2.1.3) (Long-chain acyl-CoA synthetase 6) (LACS 6). [Source:Uniprot/SWISSPROT;Acc:Q9UKU0]
17.8202 -13.07 0.000471783 500 3 1 3 [+] picture button
F13A1 ENSGACT00000025290 Coagulation factor XIII A chain precursor (EC 2.3.2.13) (Coagulation factor XIIIa) (Protein-glutamine gamma-glutamyltransferase A chain) (Transglutaminase A chain). [Source:Uniprot/SWISSPROT;Acc:P00488]
17.1132 -6.26 0.000489217 733 5 1 5 [+] picture button
SLC7A11 ENSGACT00000025969 Cystine/glutamate transporter (Amino acid transport system xc-) (xCT) (Calcium channel blocker resistance protein CCBR1). [Source:Uniprot/SWISSPROT;Acc:Q9UPY5]
16.5242 -9.84 0.000501942 500 7 2 8 [+] picture button
FRG1 ENSGACT00000022359 Protein FRG1 (FSHD region gene 1 protein). [Source:Uniprot/SWISSPROT;Acc:Q14331]
16.6322 -15.15 0.000517409 500 4 2 8 [+] picture button
NELFB_HUMAN ENSGACT00000004480 Negative elongation factor B (NELF-B) (Cofactor of BRCA1). [Source:Uniprot/SWISSPROT;Acc:Q8WX92]
16.8033 -8.36 0.000530467 240 6 3 7 [+] picture button

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Download table: GFF TXT
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