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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Gasterosteus aculeatus and fru-miR-133

912 hits found.


Page 1 of 19
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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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ELF2 ENSGACT00000024467 ETS-related transcription factor Elf-2 (E74-like factor 2) (New ETS- related factor). [Source:Uniprot/SWISSPROT;Acc:Q15723]
16.3342 -16.56 6.64843e-08 500 1 1 2 [+] picture button
POU4F1 ENSGACT00000020160 POU domain, class 4, transcription factor 1 (Brain-specific homeobox/POU domain protein 3A) (Brn-3A) (Oct-T1) (Homeobox/POU domain protein RDC-1). [Source:Uniprot/SWISSPROT;Acc:Q01851]
16.5491 -23.41 1.3706e-07 500 5 4 6 [+] picture button
SLC30A7 ENSGACT00000017920 zinc transporter like 2 [Source:RefSeq_peptide;Acc:NP_598003]
16.2396 -20.1 1.86844e-07 357 7 3 8 [+] picture button
NM_001080452.1 ENSGACT00000026317 G protein-coupled receptor 108 (GPR108), transcript variant 1, mRNA [Source:RefSeq_dna;Acc:NM_001080452]
17.1692 -24.06 2.00414e-07 500 3 4 5 [+] picture button
PRKCSH ENSGACT00000018304 Glucosidase 2 subunit beta precursor (Glucosidase II subunit beta) (Protein kinase C substrate, 60.1 kDa protein, heavy chain) (PKCSH) (80K-H protein). [Source:Uniprot/SWISSPROT;Acc:P14314]
15.4636 -20.1 2.94636e-07 226 5 4 13 [+] picture button
ENSGACT00000004994 Keratin-8-like protein 1. [Source:Uniprot/SPTREMBL;Acc:Q9H552]Keratin-8-like protein 1. [Source:Uniprot/SPTREMBL;Acc:Q9H552] BY ORTHOLOGY TO:SINFRUT00000163576
17.5176 -16.15 7.76914e-07 529 7 4 8 [+] picture button
NFKB2 ENSGACT00000001733 Nuclear factor NF-kappa-B p100 subunit (DNA-binding factor KBF2) (H2TF1) (Lymphocyte translocation chromosome 10) (Oncogene Lyt-10) (Lyt10) [Contains: Nuclear factor NF-kappa-B p52 subunit]. [Source:Uniprot/SWISSPROT;Acc:Q00653]
15.9344 -24.08 1e-06 619 6 1 3 [+] picture button
NFKB2 ENSGACT00000001728 Nuclear factor NF-kappa-B p100 subunit (DNA-binding factor KBF2) (H2TF1) (Lymphocyte translocation chromosome 10) (Oncogene Lyt-10) (Lyt10) [Contains: Nuclear factor NF-kappa-B p52 subunit]. [Source:Uniprot/SWISSPROT;Acc:Q00653]
16.3519 -24.08 1e-06 500 9 2 6 [+] picture button
CAPNS1 (1 of 2) ENSGACT00000017799 Calpain small subunit 1 (CSS1) (Calcium-dependent protease small subunit 1) (Calcium-dependent protease small subunit) (CDPS) (Calpain regulatory subunit) (Calcium-activated neutral proteinase small subunit) (CANP small subunit). [Source:Uniprot/SWISSPROT;Acc:P04632]
18.1052 -19.86 1.18286e-06 313 6 2 10 [+] picture button
ABCA2 ENSGACT00000005091 ATP-binding cassette sub-family A member 2 (ATP-binding cassette transporter 2) (ATP-binding cassette 2). [Source:Uniprot/SWISSPROT;Acc:Q9BZC7]
15.543 -19.33 1.30436e-06 500 3 1 5 [+] picture button
FARP2 ENSGACT00000006141 FERM, RhoGEF and pleckstrin domain-containing protein 2 (FERM domain including RhoGEF) (FIR). [Source:Uniprot/SWISSPROT;Acc:O94887]
16.1581 -16.64 1.83673e-06 500 4 1 5 [+] picture button
ISOC2 ENSGACT00000014031 Isochorismatase domain-containing protein 2, mitochondrial precursor. [Source:Uniprot/SWISSPROT;Acc:Q96AB3]
15.4745 -26.49 1.92517e-06 500 5 4 5 [+] picture button
SIN3B ENSGACT00000014287 Paired amphipathic helix protein Sin3b (Transcriptional corepressor Sin3b) (Histone deacetylase complex subunit Sin3b). [Source:Uniprot/SWISSPROT;Acc:O75182]
17.6872 -23.6 2.25957e-06 500 5 4 5 [+] picture button
TMEM104 ENSGACT00000019813 Transmembrane protein 104. [Source:Uniprot/SWISSPROT;Acc:Q8NE00]
18.161 -16.15 3.80927e-06 500 6 2 6 [+] picture button
CCDC85B ENSGACT00000022578 Delta-interacting protein A (Hepatitis delta antigen-interacting protein A) (Coiled-coil domain-containing protein 85B). [Source:Uniprot/SWISSPROT;Acc:Q15834]
16.2346 -15.57 4.69187e-06 500 10 4 17 [+] picture button
VPS54 ENSGACT00000025990 Vacuolar protein sorting-associated protein 54 (Tumor antigen SLP-8p) (Hepatocellular carcinoma protein 8). [Source:Uniprot/SWISSPROT;Acc:Q9P1Q0]
18.5155 -24.59 5.53575e-06 500 3 2 3 [+] picture button
SEPT6 ENSGACT00000023104 Septin-6. [Source:Uniprot/SWISSPROT;Acc:Q14141]
15.4347 -20.67 5.88764e-06 500 8 4 9 [+] picture button
TRAPPC3 ENSGACT00000009606 Trafficking protein particle complex subunit 3 (BET3 homolog). [Source:Uniprot/SWISSPROT;Acc:O43617]
17.2499 -30.32 5.95066e-06 461 3 3 3 [+] picture button
ABCB8 ENSGACT00000023802 ATP-binding cassette sub-family B member 8, mitochondrial precursor (Mitochondrial ATP-binding cassette 1) (M-ABC1). [Source:Uniprot/SWISSPROT;Acc:Q9NUT2]
17.4088 -15.5 7.07332e-06 500 8 1 8 [+] picture button
DOCK1 ENSGACT00000003478 Dedicator of cytokinesis protein 1 (180 kDa protein downstream of CRK) (DOCK180). [Source:Uniprot/SWISSPROT;Acc:Q14185]
16.01 -14.92 8.8016e-06 500 6 4 8 [+] picture button
RAE1 ENSGACT00000013144 mRNA-associated protein mrnp 41 (Rae1 protein homolog). [Source:Uniprot/SWISSPROT;Acc:P78406]
15.7424 -14.17 9.07198e-06 331 10 2 14 [+] picture button
ENSGACT00000006640 Homolog of Brachydanio rerio "Forkhead transcription factor c1.1 (Forkhead box C1a). [Source:Uniprot/SPTREMBL;Acc:Q9DE25]"Homolog of Brachydanio rerio "Forkhead transcription factor c1.1 (Forkhead box C1a). [Source:Uniprot/SPTREMBL;Acc:Q9DE25]" BY ORTHOLOGY TO:SINFRUT00000154228
17.0524 -17.06 9.48194e-06 462 7 3 6 [+] picture button
TTC25 ENSGACT00000011643 Tetratricopeptide repeat protein 25 (TPR repeat protein 25). [Source:Uniprot/SWISSPROT;Acc:Q96NG3]
15.9185 -12.21 1.02372e-05 74 3 2 5 [+] picture button
SYT14 (2 of 2) ENSGACT00000011121 Synaptotagmin-14 (Synaptotagmin XIV) (SytXIV). [Source:Uniprot/SWISSPROT;Acc:Q8NB59]
15.6935 -15.09 1.14335e-05 500 6 4 10 [+] picture button
TMEM180 ENSGACT00000004581 Transmembrane protein 180. [Source:Uniprot/SWISSPROT;Acc:Q14CX5]
15.5578 -18.85 1.32817e-05 746 6 1 5 [+] picture button
TGFB1 ENSGACT00000016962 Transforming growth factor beta-1 precursor (TGF-beta-1) [Contains: Latency-associated peptide (LAP)]. [Source:Uniprot/SWISSPROT;Acc:P01137]
15.7656 -14.58 1.55871e-05 500 5 2 5 [+] picture button
TLE1 ENSGACT00000009999 Transducin-like enhancer protein 1 (ESG1) (E(Sp1) homolog). [Source:Uniprot/SWISSPROT;Acc:Q04724]
16.3342 -18.73 1.85902e-05 500 5 1 5 [+] picture button
DOK1 ENSGACT00000026308 Docking protein 1 (Downstream of tyrosine kinase 1) (p62(dok)) (pp62). [Source:Uniprot/SWISSPROT;Acc:Q99704]
17.2288 -20.1 1.96401e-05 500 1 3 3 [+] picture button
LRRC7 ENSGACT00000008225 Leucine-rich repeat-containing protein 7 (Protein LAP1) (Densin-180). [Source:Uniprot/SWISSPROT;Acc:Q96NW7]
15.7265 -13.03 2.13175e-05 500 5 8 5 [+] picture button
LOC392617 ENSGACT00000021831 RIKEN cDNA A930017N06 gene [Source:MarkerSymbol;Acc:MGI:2442479]RIKEN cDNA A930017N06 gene [Source:MarkerSymbol;Acc:MGI:2442479] BY ORTHOLOGY TO:ENSMUST00000050519
16.2309 -16.87 2.42572e-05 500 5 4 8 [+] picture button
CENTG1 (1 of 2) ENSGACT00000015583 Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like, ankyrin repeat and pleckstrin homology domains 2) (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE) (GTP-binding and GTPase-activating protein 2) (GGAP2). [Source:Uniprot/SWISSPROT;Acc:Q99490]
17.3908 -16.57 2.43754e-05 500 4 4 6 [+] picture button
ODC1 ENSGACT00000017217 Ornithine decarboxylase (EC 4.1.1.17) (ODC). [Source:Uniprot/SWISSPROT;Acc:P11926]
15.9136 -21.47 2.55904e-05 500 5 2 4 [+] picture button
ENSGACT00000014427 Homolog of Homo sapiens "Dipeptidylpeptidase 10 [Source:IPI;Acc:IPI00166892]"Homolog of Homo sapiens "Dipeptidylpeptidase 10 [Source:IPI;Acc:IPI00166892]" BY ORTHOLOGY TO:SINFRUT00000127674
17.1161 -25.61 2.57197e-05 500 6 4 10 [+] picture button
CCDC51 ENSGACT00000004697 coiled-coil domain containing 51 [Source:RefSeq_peptide;Acc:NP_078937]
16.4416 -17.62 2.77905e-05 500 3 1 4 [+] picture button
C9orf6 ENSGACT00000007877 similar to CG9288-PA (LOC390403), mRNA [Source:RefSeq_dna;Acc:XR_017272]
15.8243 -14.24 2.84682e-05 500 5 1 5 [+] picture button
SLC30A5 ENSGACT00000023806 zinc transporter ZTL1 isoform 1 [Source:RefSeq_peptide;Acc:NP_075053]
16.487 -13.17 2.90807e-05 85 1 3 1 [+] picture button
LIPE (2 of 2) ENSGACT00000004240 Hormone-sensitive lipase (EC 3.1.1.79) (HSL). [Source:Uniprot/SWISSPROT;Acc:Q05469]
15.8808 -16.21 3.04827e-05 500 6 1 7 [+] picture button
CYB561D2 ENSGACT00000002041 Cytochrome b561 domain-containing protein 2 (Putative tumor suppressor protein 101F6). [Source:Uniprot/SWISSPROT;Acc:O14569]
16.764 -29.89 3.29214e-05 500 9 1 15 [+] picture button
ENSGACT00000006765 Homolog of Homo sapiens "G-protein-coupled receptor induced protein [Source:RefSeq_peptide;Acc:NP_079471]"Homolog of Homo sapiens "G-protein-coupled receptor induced protein [Source:RefSeq_peptide;Acc:NP_079471]" BY ORTHOLOGY TO:SINFRUT00000150009
16.6565 -26.37 3.4158e-05 500 6 4 7 [+] picture button
ARFRP1 ENSGACT00000015253 ADP-ribosylation factor-related protein 1 (ARF-related protein 1) (ARP). [Source:Uniprot/SWISSPROT;Acc:Q13795]
15.5819 -14.18 4.06979e-05 500 6 2 8 [+] picture button
GAPVD1 ENSGACT00000015892 GTPase activating protein and VPS9 domains 1 [Source:RefSeq_peptide;Acc:NP_056450]
16.8646 -18.51 4.17593e-05 500 4 2 5 [+] picture button
GALR1 (2 of 2) ENSGACT00000007335 Galanin receptor type 1 (GAL1-R) (GALR1). [Source:Uniprot/SWISSPROT;Acc:P47211]
16.262 -16.26 4.5211e-05 500 6 3 7 [+] picture button
NP_001001520.1 ENSGACT00000015116 hepatoma-derived growth factor-related protein 2 isoform 1 [Source:RefSeq_peptide;Acc:NP_001001520]
17.2501 -20.12 5.3219e-05 559 4 2 7 [+] picture button
FOXC1 ENSGACT00000021779 Forkhead box protein C1 (Forkhead-related protein FKHL7) (Forkhead- related transcription factor 3) (FREAC-3). [Source:Uniprot/SWISSPROT;Acc:Q12948]
16.8646 -16.4 5.33822e-05 500 2 4 3 [+] picture button
SQLE ENSGACT00000006292 Squalene monooxygenase (EC 1.14.99.7) (Squalene epoxidase) (SE). [Source:Uniprot/SWISSPROT;Acc:Q14534]
16.0118 -15.24 5.71945e-05 500 5 1 5 [+] picture button
CAMKK2 ENSGACT00000023205 Calcium/calmodulin-dependent protein kinase kinase 2 (EC 2.7.11.17) (Calcium/calmodulin-dependent protein kinase kinase beta) (CaM-kinase kinase beta) (CaM-KK beta) (CaMKK beta). [Source:Uniprot/SWISSPROT;Acc:Q96RR4]
16.9418 -22.77 6.16184e-05 76 3 3 6 [+] picture button
C9orf32 ENSGACT00000024551 UPF0351 protein C9orf32. [Source:Uniprot/SWISSPROT;Acc:Q9BV86]
15.4745 -18.51 6.28955e-05 500 7 2 8 [+] picture button
SLC4A2 (2 of 3) ENSGACT00000001989 Anion exchange protein 2 (Non-erythroid band 3-like protein) (AE2 anion exchanger) (Solute carrier family 4 member 2) (BND3L). [Source:Uniprot/SWISSPROT;Acc:P04920]
16.7144 -24.66 6.43305e-05 180 3 6 5 [+] picture button
RFXANK ENSGACT00000017370 DNA-binding protein RFXANK (Regulatory factor X subunit B) (RFX-B) (Ankyrin repeat family A protein 1). [Source:Uniprot/SWISSPROT;Acc:O14593]
15.6366 -14.32 6.43731e-05 500 7 2 11 [+] picture button
SBK1 ENSGACT00000011250 Serine/threonine-protein kinase SBK1 (EC 2.7.11.1) (SH3-binding kinase 1). [Source:Uniprot/SWISSPROT;Acc:Q52WX2]
15.7969 -16.29 7.12245e-05 500 8 4 10 [+] picture button

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Download table: GFF TXT
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