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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Gasterosteus aculeatus and fru-miR-130

865 hits found.


Page 1 of 18
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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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MEOX2 ENSGACT00000016872 Homeobox protein MOX-2 (Mesenchyme homeobox 2) (Growth arrest-specific homeobox). [Source:Uniprot/SWISSPROT;Acc:P50222]
17.2503 -17.13 9.18347e-09 500 5 10 11 [+] picture button
CHST1 ENSGACT00000022649 Carbohydrate sulfotransferase 1 (EC 2.8.2.21) (Keratan sulfate Gal-6 sulfotransferase) (KSST) (KSGal6ST) (KS6ST) (Galactose/N- acetylglucosamine/N-acetylglucosamine 6-O-sulfotransferase 1) (GST-1). [Source:Uniprot/SWISSPROT;Acc:O43916]
17.6237 -12.47 5.52205e-08 500 4 10 7 [+] picture button
LGMN ENSGACT00000016142 Legumain precursor (EC 3.4.22.34) (Asparaginyl endopeptidase) (Protease, cysteine 1). [Source:Uniprot/SWISSPROT;Acc:Q99538]
17.2337 -14.45 1.16516e-07 402 7 4 14 [+] picture button
SPOPL_HUMAN ENSGACT00000009736 Speckle-type POZ protein-like (HIB homolog 2) (Roadkill homolog 2). [Source:Uniprot/SWISSPROT;Acc:Q6IQ16]
16.3166 -15.14 1.27772e-07 500 3 10 7 [+] picture button
TSHZ1 (2 of 2) ENSGACT00000005176 Teashirt homolog 1 (Serologically defined colon cancer antigen 3) (Antigen NY-CO-33). [Source:Uniprot/SWISSPROT;Acc:Q6ZSZ6]
16.7931 -10.61 2.56878e-07 500 8 13 13 [+] picture button
HOXA3 ENSGACT00000009419 Homeobox protein Hox-A3 (Hox-1E). [Source:Uniprot/SWISSPROT;Acc:O43365]
16.8723 -16.54 3.34752e-07 500 6 9 12 [+] picture button
TNRC6A ENSGACT00000018950 Trinucleotide repeat-containing gene 6A protein (CAG repeat protein 26) (Glycine-tryptophan protein of 182 kDa) (GW182 autoantigen) (Protein GW1) (EMSY interactor protein). [Source:Uniprot/SWISSPROT;Acc:Q8NDV7]
19.0819 -19.82 5.27831e-07 500 9 12 18 [+] picture button
ZNF238 ENSGACT00000013932 Zinc finger protein 238 (Transcriptional repressor RP58) (58 kDa repressor protein) (Zinc finger protein C2H2-171) (Translin-associated zinc finger protein 1) (TAZ-1) (Zinc finger and BTB domain-containing protein 18). [Source:Uniprot/SWISSPROT;Acc:Q99592]
16.1527 -10.65 6.83861e-07 500 5 10 10 [+] picture button
EMX2 ENSGACT00000004208 Homeobox protein EMX2 (Empty spiracles homolog 2) (Empty spiracles- like protein 2). [Source:Uniprot/SWISSPROT;Acc:Q04743]
17.4771 -13.81 1.14922e-06 500 6 8 8 [+] picture button
RXFP2 ENSGACT00000027221 Relaxin receptor 2 (Relaxin family peptide receptor 2) (Leucine-rich repeat-containing G-protein coupled receptor 8) (G-protein coupled receptor affecting testicular descent) (G-protein coupled receptor 106). [Source:Uniprot/SWISSPROT;Acc:Q8WXD0]
16.6914 -16.68 1.27672e-06 500 5 2 11 [+] picture button
MLLT10 ENSGACT00000003282 Protein AF-10. [Source:Uniprot/SWISSPROT;Acc:P55197]
16.0557 -10.64 1.34487e-06 500 3 1 4 [+] picture button
PTPN4 ENSGACT00000010366 Tyrosine-protein phosphatase non-receptor type 4 (EC 3.1.3.48) (Protein-tyrosine phosphatase MEG1) (PTPase-MEG1) (MEG). [Source:Uniprot/SWISSPROT;Acc:P29074]
16.2714 -9.77 1.38856e-06 500 7 4 15 [+] picture button
SKP1A ENSGACT00000027665 S-phase kinase-associated protein 1A (Cyclin A/CDK2-associated protein p19) (p19A) (p19skp1) (RNA polymerase II elongation factor-like protein) (Organ of Corti protein 2) (OCP-II protein) (OCP-2) (Transcription elongation factor B) (SIII). [Source:Uniprot/SWISSPROT;Acc:P63208]
16.818 -22.89 1.96896e-06 515 3 7 5 [+] picture button
ARPC2 ENSGACT00000019215 Actin-related protein 2/3 complex subunit 2 (ARP2/3 complex 34 kDa subunit) (p34-ARC). [Source:Uniprot/SWISSPROT;Acc:O15144]
16.0679 -19.81 2.01119e-06 500 6 8 8 [+] picture button
SFPQ ENSGACT00000002663 Splicing factor, proline- and glutamine-rich (Polypyrimidine tract- binding protein-associated-splicing factor) (PTB-associated-splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) (100 kDa DNA-pairing protein) (hPOMp100). [Source:Uniprot/SWISSPROT;Acc:P23246]
17.118 -19.43 3.61178e-06 367 5 4 8 [+] picture button
PAN3 ENSGACT00000004055 PAB-dependent poly(A)-specific ribonuclease subunit 3 (hPan3). [Source:Uniprot/SWISSPROT;Acc:Q58A45]
16.6635 -11.57 3.64192e-06 500 2 14 5 [+] picture button
MDH2 ENSGACT00000008071 Malate dehydrogenase, mitochondrial precursor (EC 1.1.1.37). [Source:Uniprot/SWISSPROT;Acc:P40926]
16.5491 -11.21 3.99047e-06 500 5 4 9 [+] picture button
USP33 ENSGACT00000021904 Ubiquitin carboxyl-terminal hydrolase 33 (EC 3.1.2.15) (Ubiquitin thioesterase 33) (Ubiquitin-specific-processing protease 33) (Deubiquitinating enzyme 33) (VHL-interacting deubiquitinating enzyme 1). [Source:Uniprot/SWISSPROT;Acc:Q8TEY7]
18.6983 -17.11 4.16081e-06 500 6 2 6 [+] picture button
SMOX ENSGACT00000023329 Spermine oxidase (EC 1.5.3.-) (Polyamine oxidase 1) (PAO-1) (PAOh1). [Source:Uniprot/SWISSPROT;Acc:Q9NWM0]
17.4232 -14.6 4.58969e-06 340 8 5 18 [+] picture button
VPS13C ENSGACT00000023379 Vacuolar protein sorting-associated protein 13C. [Source:Uniprot/SWISSPROT;Acc:Q709C8]
16.2293 -15.28 4.70292e-06 531 6 1 6 [+] picture button
APAF1 ENSGACT00000026265 Apoptotic protease-activating factor 1 (Apaf-1). [Source:Uniprot/SWISSPROT;Acc:O14727]
17.1161 -15.21 4.70297e-06 500 11 1 16 [+] picture button
SESN2 ENSGACT00000007623 Sestrin-2 (Hi95). [Source:Uniprot/SWISSPROT;Acc:P58004]
17.6953 -16.33 5.56209e-06 400 7 3 18 [+] picture button
PTPLAD1 (2 of 2) ENSGACT00000006383 butyrate-induced transcript 1 [Source:RefSeq_peptide;Acc:NP_057479]
18.0788 -13.85 5.93572e-06 289 4 1 9 [+] picture button
TDH ENSGACT00000014384 L-threonine dehydrogenase (TDH) on chromosome 8 [Source:RefSeq_dna;Acc:NR_001578]
16.5491 -17.32 6.19929e-06 500 4 4 5 [+] picture button
GPR98 ENSGACT00000013954 G-protein coupled receptor 98 precursor (Monogenic audiogenic seizure susceptibility protein 1 homolog) (Very large G-protein coupled receptor 1) (Usher syndrome type-2C protein). [Source:Uniprot/SWISSPROT;Acc:Q8WXG9]
16.7247 -10.11 6.34416e-06 389 7 8 12 [+] picture button
CYP2U1 ENSGACT00000023146 cytochrome P450, family 2, subfamily U, polypeptide 1 [Source:RefSeq_peptide;Acc:NP_898898]
17.0833 -17.22 7.37619e-06 605 1 1 2 [+] picture button
MTFR1 ENSGACT00000003917 Mitochondrial fission regulator 1 (Chondrocyte protein with a poly- proline region). [Source:Uniprot/SWISSPROT;Acc:Q15390]
16.6565 -14.14 7.67058e-06 500 6 1 10 [+] picture button
ZNFX1 ENSGACT00000008013 NFX1-type zinc finger-containing protein 1. [Source:Uniprot/SWISSPROT;Acc:Q9P2E3]
19.0537 -17.51 8.16162e-06 500 5 1 10 [+] picture button
NCAPD2 ENSGACT00000013635 Condensin complex subunit 1 (Non-SMC condensin I complex subunit D2) (Chromosome condensation-related SMC-associated protein 1) (Chromosome-associated protein D2) (hCAP-D2) (XCAP-D2 homolog). [Source:Uniprot/SWISSPROT;Acc:Q15021]
17.8514 -14.36 8.75728e-06 154 3 2 8 [+] picture button
HELZ ENSGACT00000024549 Probable helicase with zinc-finger domain (EC 3.6.1.-). [Source:Uniprot/SWISSPROT;Acc:P42694]
16.3554 -9.03 9.02936e-06 500 6 3 8 [+] picture button
DLX5 ENSGACT00000009017 Homeobox protein DLX-5. [Source:Uniprot/SWISSPROT;Acc:P56178]
16.4245 -12.36 1.21881e-05 500 6 10 9 [+] picture button
HIVEP3 ENSGACT00000003071 human immunodeficiency virus type I enhancer binding protein 3 [Source:RefSeq_peptide;Acc:NP_078779]
16.9438 -15.76 1.24262e-05 500 6 13 12 [+] picture button
DEPDC1B ENSGACT00000007328 DEP domain-containing protein 1B (HBxAg-transactivated protein 8). [Source:Uniprot/SWISSPROT;Acc:Q8WUY9]
19.0207 -19.9 1.31352e-05 500 9 4 14 [+] picture button
CGA ENSGACT00000012123 Glycoprotein hormones alpha chain precursor (Anterior pituitary glycoprotein hormones common subunit alpha) (Follitropin alpha chain) (Follicle-stimulating hormone alpha chain) (FSH-alpha) (Lutropin alpha chain) (Luteinizing hormone alpha chain) (LSH-alph [Source:Uniprot/SWISSPROT;Acc:P01215]
17.624 -17.85 1.85534e-05 209 7 3 16 [+] picture button
BAI3 ENSGACT00000007998 Brain-specific angiogenesis inhibitor 3 precursor. [Source:Uniprot/SWISSPROT;Acc:O60242]
16.4247 -12.23 1.95264e-05 500 6 10 11 [+] picture button
OAZ1 ENSGACT00000016744 Ornithine decarboxylase antizyme (ODC-Az). [Source:Uniprot/SWISSPROT;Acc:P54368]
17.5601 -12.89 1.96528e-05 444 6 4 10 [+] picture button
PHF17 ENSGACT00000006061 Protein Jade-1 (PHD finger protein 17). [Source:Uniprot/SWISSPROT;Acc:Q6IE81]
17.2167 -11.71 2.33509e-05 500 4 2 8 [+] picture button
LOC649930 ENSGACT00000024276 px19-like protein [Source:RefSeq_peptide;Acc:NP_001033227]px19-like protein [Source:RefSeq_peptide;Acc:NP_001033227] BY ORTHOLOGY TO:ENSBTAT00000006594
18.761 -13.38 2.38966e-05 142 2 3 4 [+] picture button
PGD ENSGACT00000009553 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44). [Source:Uniprot/SWISSPROT;Acc:P52209]
16.5868 -14.11 2.8035e-05 321 6 4 13 [+] picture button
ENSGACT00000021417 NOT ANNOTATED
17.1995 -17.5 2.84222e-05 629 6 4 8 [+] picture button
HABP4 ENSGACT00000008924 Intracellular hyaluronan-binding protein 4 (IHABP4) (Ki-1/57 intracellular antigen). [Source:Uniprot/SWISSPROT;Acc:Q5JVS0]
16.3733 -9.15 2.86282e-05 91 2 3 5 [+] picture button
TSPAN3 (2 of 2) ENSGACT00000013875 Tetraspanin-3 (Tspan-3) (Transmembrane 4 superfamily member 8) (Tetraspanin TM4-A). [Source:Uniprot/SWISSPROT;Acc:O60637]
16.8982 -19.63 2.89927e-05 799 4 4 7 [+] picture button
SNAP25 (1 of 2) ENSGACT00000006076 Synaptosomal-associated protein 25 (SNAP-25) (Synaptosomal-associated 25 kDa protein) (Super protein) (SUP). [Source:Uniprot/SWISSPROT;Acc:P60880]
17.0555 -13.56 2.95512e-05 120 1 5 3 [+] picture button
RRP9 ENSGACT00000013797 U3 small nucleolar RNA-interacting protein 2 (U3 small nucleolar ribonucleoprotein-associated 55 kDa protein) (U3 snoRNP-associated 55 kDa protein) (U3-55K) (RRP9 homolog). [Source:Uniprot/SWISSPROT;Acc:O43818]
16.764 -14.3 3.02645e-05 500 2 1 3 [+] picture button
DDX5 (1 of 2) ENSGACT00000009367 Probable ATP-dependent RNA helicase DDX5 (EC 3.6.1.-) (DEAD box protein 5) (RNA helicase p68). [Source:Uniprot/SWISSPROT;Acc:P17844]
16.6007 -14.45 3.10398e-05 297 8 4 17 [+] picture button
ZEB2 (1 of 2) ENSGACT00000020694 Zinc finger E-box-binding homeobox 2 (Zinc finger homeobox protein 1b) (Smad-interacting protein 1) (SMADIP1). [Source:Uniprot/SWISSPROT;Acc:O60315]
18.0956 -14.83 3.32314e-05 500 10 14 15 [+] picture button
GTF2H1 ENSGACT00000007545 TFIIH basal transcription factor complex p62 subunit (Basic transcription factor 62 kDa subunit) (BTF2-p62) (General transcription factor IIH polypeptide 1). [Source:Uniprot/SWISSPROT;Acc:P32780]
17.3013 -15.59 3.48658e-05 500 3 4 5 [+] picture button
CPEB3 ENSGACT00000003864 Cytoplasmic polyadenylation element-binding protein 3 (CPE-binding protein 3) (CPE-BP3) (hCPEB-3). [Source:Uniprot/SWISSPROT;Acc:Q8NE35]
16.7796 -10.14 3.62786e-05 500 4 1 11 [+] picture button
GLB1 ENSGACT00000023345 Beta-galactosidase-related protein precursor (Beta-galactosidase-like protein) (S-Gal) (Elastin-binding protein) (EBP). [Source:Uniprot/SWISSPROT;Acc:P16279]
16.5172 -12.27 3.8096e-05 364 10 1 17 [+] picture button
ITGB6 ENSGACT00000020061 Integrin beta-6 precursor. [Source:Uniprot/SWISSPROT;Acc:P18564]
16.3581 -11.2 4.00658e-05 500 10 2 12 [+] picture button

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Download table: GFF TXT
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