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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Gasterosteus aculeatus and fru-miR-10d

974 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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HOXA3 ENSGACT00000009419 Homeobox protein Hox-A3 (Hox-1E). [Source:Uniprot/SWISSPROT;Acc:O43365]
15.4688 -15.55 0.00000000909035 500 6 9 12 [+] picture button
POP4 ENSGACT00000019189 Ribonuclease P protein subunit p29 (EC 3.1.26.5) (hPOP4). [Source:Uniprot/SWISSPROT;Acc:O95707]
16.0173 -20.53 0.0000000546346 563 5 1 6 [+] picture button
WNT9A ENSGACT00000023074 Protein Wnt-9a precursor (Wnt-14). [Source:Uniprot/SWISSPROT;Acc:O14904]
16.3769 -23.63 0.000000445552 500 5 5 10 [+] picture button
HOXD10 ENSGACT00000006039 Homeobox protein Hox-D10 (Hox-4D) (Hox-4E). [Source:Uniprot/SWISSPROT;Acc:P28358]
16.8549 -17.83 0.00000072834 500 6 8 7 [+] picture button
WDR1 ENSGACT00000012063 WD repeat protein 1 (Actin-interacting protein 1) (AIP1) (NORI-1). [Source:Uniprot/SWISSPROT;Acc:O75083]
15.2421 -18.91 0.00000183506 109 4 3 5 [+] picture button
DVL2 ENSGACT00000025606 Segment polarity protein dishevelled homolog DVL-2 (Dishevelled-2) (DSH homolog 2). [Source:Uniprot/SWISSPROT;Acc:O14641]
17.2552 -23.08 0.00000230842 500 3 5 4 [+] picture button
TRAIP ENSGACT00000015985 TRAF-interacting protein (RING finger protein 206). [Source:Uniprot/SWISSPROT;Acc:Q9BWF2]
15.8599 -18.4 0.00000305883 500 5 1 6 [+] picture button
RBM12 ENSGACT00000005545 Copine-1 (Copine I). [Source:Uniprot/SWISSPROT;Acc:Q99829]
15.6888 -18.84 0.0000037879 500 7 6 8 [+] picture button
PC ENSGACT00000026135 Pyruvate carboxylase, mitochondrial precursor (EC 6.4.1.1) (Pyruvic carboxylase) (PCB). [Source:Uniprot/SWISSPROT;Acc:P11498]
15.5828 -13.67 0.0000056613 500 3 2 3 [+] picture button
GRIN2B (2 of 2) ENSGACT00000021128 Glutamate [NMDA] receptor subunit epsilon-2 precursor (N-methyl D- aspartate receptor subtype 2B) (NR2B) (NMDAR2B) (N-methyl-D-aspartate receptor subunit 3) (NR3) (hNR3). [Source:Uniprot/SWISSPROT;Acc:Q13224]
16.4256 -19.99 0.00000636988 500 3 5 6 [+] picture button
MARK2 ENSGACT00000026267 Serine/threonine-protein kinase MARK2 (EC 2.7.11.1) (MAP/microtubule affinity-regulating kinase 2) (ELKL motif kinase) (EMK1) (PAR1 homolog). [Source:Uniprot/SWISSPROT;Acc:Q7KZI7]
15.5896 -14.57 0.00000669419 500 5 4 8 [+] picture button
ENSGACT00000015778 Homolog of Sphoeroides nephelus "HoxD4b. [Source:Uniprot/SPTREMBL;Acc:Q6W987]"Homolog of Sphoeroides nephelus "HoxD4b. [Source:Uniprot/SPTREMBL;Acc:Q6W987]" BY ORTHOLOGY TO:SINFRUT00000181962
18.2642 -22 0.00000728307 500 4 3 4 [+] picture button
BPGM ENSGACT00000005572 Bisphosphoglycerate mutase (EC 5.4.2.4) (2,3-bisphosphoglycerate mutase, erythrocyte) (2,3-bisphosphoglycerate synthase) (BPGM) (EC 5.4.2.1) (EC 3.1.3.13) (BPG-dependent PGAM). [Source:Uniprot/SWISSPROT;Acc:P07738]
16.4954 -20.49 0.00000732399 535 10 3 20 [+] picture button
CNOT8 ENSGACT00000027583 CCR4-NOT transcription complex subunit 8 (CCR4-associated factor 8) (CAF1-like protein) (CALIFp) (CAF2). [Source:Uniprot/SWISSPROT;Acc:Q9UFF9]
15.1632 -13.45 0.00000876194 457 2 2 2 [+] picture button
OTOF (1 of 2) ENSGACT00000011873 Otoferlin (Fer-1-like protein 2). [Source:Uniprot/SWISSPROT;Acc:Q9HC10]
15.0117 -20.72 0.00000888047 500 4 1 5 [+] picture button
VPS37B ENSGACT00000006892 vacuolar protein sorting 37B [Source:RefSeq_peptide;Acc:NP_078943]
15.6196 -19.08 0.00000943272 500 5 1 9 [+] picture button
PRIM2A ENSGACT00000008137 DNA primase large subunit (EC 2.7.7.-) (DNA primase 58 kDa subunit) (p58). [Source:Uniprot/SWISSPROT;Acc:P49643]
15.0674 -20.6 0.0000135861 406 7 2 13 [+] picture button
SUPT16H ENSGACT00000025035 FACT complex subunit SPT16 (Facilitates chromatin transcription complex subunit SPT16) (hSPT16) (FACT 140 kDa subunit) (FACTp140) (Chromatin-specific transcription elongation factor 140 kDa subunit). [Source:Uniprot/SWISSPROT;Acc:Q9Y5B9]
15.0836 -23.15 0.0000144184 578 6 3 8 [+] picture button
KBTBD7 ENSGACT00000002259 Kelch repeat and BTB domain-containing protein 7. [Source:Uniprot/SWISSPROT;Acc:Q8WVZ9]
17.3849 -22.32 0.0000174685 500 5 4 4 [+] picture button
IARS2 ENSGACT00000017626 Isoleucyl-tRNA synthetase, mitochondrial precursor (EC 6.1.1.5) (Isoleucine--tRNA ligase) (IleRS). [Source:Uniprot/SWISSPROT;Acc:Q9NSE4]
15.6904 -15.07 0.0000199631 295 6 2 5 [+] picture button
TBP ENSGACT00000021345 TATA-box-binding protein (TATA-box factor) (TATA-binding factor) (TATA sequence-binding protein) (Transcription initiation factor TFIID TBP subunit). [Source:Uniprot/SWISSPROT;Acc:P20226]
15.3935 -16.26 0.0000202655 500 7 2 9 [+] picture button
MYOCD ENSGACT00000002995 Myocardin. [Source:Uniprot/SWISSPROT;Acc:Q8IZQ8]
16.1404 -15.34 0.00002098 500 4 1 2 [+] picture button
HTATIP ENSGACT00000027028 Histone acetyltransferase HTATIP (EC 2.3.1.48) (EC 2.3.1.-) (60 kDa Tat interactive protein) (Tip60) (HIV-1 Tat interactive protein) (cPLA(2)-interacting protein). [Source:Uniprot/SWISSPROT;Acc:Q92993]
15.3656 -20.1 0.0000248236 500 5 2 6 [+] picture button
ICA1L ENSGACT00000018272 Islet cell autoantigen 1-like protein (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 15 protein). [Source:Uniprot/SWISSPROT;Acc:Q8NDH6]
15.594 -10.23 0.0000309942 500 5 3 9 [+] picture button
RHOV (1 of 2) ENSGACT00000017191 ras homolog gene family, member V [Source:RefSeq_peptide;Acc:NP_598378]
15.2975 -19.25 0.0000348078 500 8 4 9 [+] picture button
EIF3S9 ENSGACT00000022154 Eukaryotic translation initiation factor 3 subunit 9 (eIF-3 eta) (eIF3 p116) (eIF3 p110) (eIF3b) (Prt1 homolog) (hPrt1). [Source:Uniprot/SWISSPROT;Acc:P55884]
15.4226 -22.16 0.0000358507 494 4 3 9 [+] picture button
NP_620419.2 ENSGACT00000019503 epidermal retinal dehydrogenase 2 [Source:RefSeq_peptide;Acc:NP_620419]
15.1588 -13.24 0.0000395392 500 7 1 8 [+] picture button
TELO2 ENSGACT00000011202 TEL2, telomere maintenance 2, homolog [Source:RefSeq_peptide;Acc:NP_057195]
15.2521 -23.05 0.0000442899 442 9 2 9 [+] picture button
CENPA ENSGACT00000013300 Uncharacterized protein C2orf18 precursor. [Source:Uniprot/SWISSPROT;Acc:Q8N357]
16.0871 -14.47 0.0000476478 500 7 4 9 [+] picture button
PRUNE ENSGACT00000004230 prune homolog [Source:RefSeq_peptide;Acc:NP_067045]
15.6904 -16.76 0.0000477869 500 8 1 7 [+] picture button
TUBB1 ENSGACT00000008391 Tubulin beta-1 chain. [Source:Uniprot/SWISSPROT;Acc:Q9H4B7]
15.661 -13.4 0.0000484228 500 10 2 10 [+] picture button
UBXD8 ENSGACT00000024391 UBX domain-containing protein 8 (Protein ETEA). [Source:Uniprot/SWISSPROT;Acc:Q96CS3]
17.2706 -24.34 0.0000541182 500 4 3 6 [+] picture button
PGAM5 ENSGACT00000017141 Bcl-XL-binding protein v68 [Source:RefSeq_peptide;Acc:NP_612642]
17.3197 -20.13 0.0000546013 500 7 2 10 [+] picture button
WDR54 ENSGACT00000013619 WD repeat protein 54. [Source:Uniprot/SWISSPROT;Acc:Q9H977]
15.13 -12.49 0.0000629496 192 3 2 4 [+] picture button
Q8N950_HUMAN ENSGACT00000006556 CDNA FLJ38364 fis, clone FEBRA2000909. [Source:Uniprot/SPTREMBL;Acc:Q8N950]
16.459 -24.65 0.0000635273 500 3 3 3 [+] picture button
C19orf29 ENSGACT00000020250 Uncharacterized protein C19orf29 (Renal carcinoma antigen NY-REN-24). [Source:Uniprot/SWISSPROT;Acc:Q8WUQ7]
16.2508 -21.94 0.0000686755 176 6 1 9 [+] picture button
UBE2I ENSGACT00000011801 SUMO-conjugating enzyme UBC9 (EC 6.3.2.-) (SUMO-protein ligase) (Ubiquitin-conjugating enzyme E2 I) (Ubiquitin-protein ligase I) (Ubiquitin carrier protein I) (Ubiquitin carrier protein 9) (p18). [Source:Uniprot/SWISSPROT;Acc:P63279]
17.1931 -18.7 0.0000692998 714 8 6 11 [+] picture button
MANBA ENSGACT00000006666 Beta-mannosidase precursor (EC 3.2.1.25) (Lysosomal beta A mannosidase) (Mannanase) (Mannase). [Source:Uniprot/SWISSPROT;Acc:O00462]
15.2728 -21.5 0.0000704009 481 6 2 7 [+] picture button
ICMT ENSGACT00000017632 Protein-S-isoprenylcysteine O-methyltransferase (EC 2.1.1.100) (Isoprenylcysteine carboxylmethyltransferase) (Prenylcysteine carboxyl methyltransferase) (pcCMT) (Prenylated protein carboxyl methyltransferase) (PPMT). [Source:Uniprot/SWISSPROT;Acc:O60725]
16.0068 -20.34 0.0000706976 500 6 2 6 [+] picture button
LOC390616 ENSGACT00000014393 Homolog of Homo sapiens "Ankyrin repeat domain 34 [Source:UniGene;Acc:Hs.331667]"Homolog of Homo sapiens "Ankyrin repeat domain 34 [Source:UniGene;Acc:Hs.331667]" BY ORTHOLOGY TO:SINFRUT00000183444
15.8219 -15.64 0.000070823 500 8 4 10 [+] picture button
DMXL1 ENSGACT00000008264 Protein DmX-like 1 (X-like 1 protein). [Source:Uniprot/SWISSPROT;Acc:Q9Y485]
16.3705 -24.55 0.000073308 500 6 1 6 [+] picture button
HIATL1 (1 of 2) ENSGACT00000024208 Hippocampus abundant transcript-like protein 1. [Source:Uniprot/SWISSPROT;Acc:Q5SR56]
16.2188 -24.82 0.0000734164 500 8 1 8 [+] picture button
ENSGACT00000017450 insulin-like growth factor 1a receptor [Source:RefSeq_peptide;Acc:NP_694500]insulin-like growth factor 1a receptor [Source:RefSeq_peptide;Acc:NP_694500] BY ORTHOLOGY TO:ENSDART00000010189
15.5828 -15.55 0.0000753419 500 2 3 6 [+] picture button
PGAP1_HUMAN ENSGACT00000002182 GPI inositol-deacylase (EC 3.1.-.-) (hPGAP1). [Source:Uniprot/SWISSPROT;Acc:Q75T13]
16.9609 -19.39 0.0000760375 500 5 4 7 [+] picture button
TSPAN31 ENSGACT00000015569 Tetraspanin-31 (Tspan-31) (Sarcoma amplified sequence). [Source:Uniprot/SWISSPROT;Acc:Q12999]
14.9059 -13.85 0.0000813736 131 3 2 7 [+] picture button
NP_001035251.1 (1 of 2) ENSGACT00000025474 MGC13114 protein. [Source:Uniprot/SPTREMBL;Acc:Q96IW1] [from human gene ENSG00000130731]MGC13114 protein. [Source:Uniprot/SPTREMBL;Acc:Q96IW1] [from human gene ENSG00000130731] BY ORTHOLOGY TO:ENSXETT00000043698
15.793 -19.81 0.0000831615 441 6 3 8 [+] picture button
TWF2 ENSGACT00000002178 Twinfilin-2 (Twinfilin-1-like protein) (A6-related protein) (hA6RP) (Protein tyrosine kinase 9-like). [Source:Uniprot/SWISSPROT;Acc:Q6IBS0]
18.3041 -31.96 0.0000841555 500 2 1 3 [+] picture button
ENSGACT00000013623 Homolog of Homo sapiens "Lipid phosphate phosphohydrolase 3 [Source:IPI;Acc:IPI00021453]"Homolog of Homo sapiens "Lipid phosphate phosphohydrolase 3 [Source:IPI;Acc:IPI00021453]" BY ORTHOLOGY TO:SINFRUT00000180693
15.2213 -20.39 0.0000852065 500 6 2 10 [+] picture button
SLC25A30 ENSGACT00000017126 solute carrier family 25, member 30 [Source:RefSeq_peptide;Acc:NP_001010875]
16.4308 -21.07 0.0000859214 500 8 2 9 [+] picture button
FAM118B ENSGACT00000008672 family with sequence similarity 118, member B (FAM118B), mRNA [Source:RefSeq_dna;Acc:NM_024556]
18.0714 -21.34 0.0000868357 500 3 1 3 [+] picture button

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Download table: GFF TXT
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