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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Gasterosteus aculeatus and fru-miR-101a

953 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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USP47 ENSGACT00000020802 Ubiquitin carboxyl-terminal hydrolase 47 (EC 3.1.2.15) (Ubiquitin thioesterase 47) (Ubiquitin-specific-processing protease 47) (Deubiquitinating enzyme 47). [Source:Uniprot/SWISSPROT;Acc:Q96K76]
17.5162 -16.87 2.73398e-09 500 10 10 17 [+] picture button
SMOX ENSGACT00000023329 Spermine oxidase (EC 1.5.3.-) (Polyamine oxidase 1) (PAO-1) (PAOh1). [Source:Uniprot/SWISSPROT;Acc:Q9NWM0]
18.5473 -14.72 3.22473e-09 340 8 5 18 [+] picture button
CAV3 ENSGACT00000001179 Caveolin-3 (M-caveolin). [Source:Uniprot/SWISSPROT;Acc:P56539]
16.2596 -17.85 2.12687e-08 295 7 3 14 [+] picture button
DKK1 ENSGACT00000012096 Dickkopf-related protein 1 precursor (Dkk-1) (Dickkopf-1) (hDkk-1) (SK). [Source:Uniprot/SWISSPROT;Acc:O94907]
17.6831 -19.7 6.82587e-08 500 5 11 6 [+] picture button
WWC3 ENSGACT00000018565 WWC family member 3. [Source:Uniprot/SWISSPROT;Acc:Q9ULE0]
17.376 -19.68 2.27895e-07 564 7 10 12 [+] picture button
FLRT2 (2 of 2) ENSGACT00000006636 Leucine-rich repeat transmembrane protein FLRT2 precursor (Fibronectin-like domain-containing leucine-rich transmembrane protein 2). [Source:Uniprot/SWISSPROT;Acc:O43155]
17.5162 -16.32 3.28026e-07 500 4 8 5 [+] picture button
MOBKL2A ENSGACT00000010199 Mps one binder kinase activator-like 2A (Mob1 homolog 2A) (MOB-LAK) (Protein Mob3A). [Source:Uniprot/SWISSPROT;Acc:Q96BX8]
17.4484 -14.42 5.26979e-07 597 6 3 9 [+] picture button
ENSGACT00000014075 NOT ANNOTATED
19.558 -23.11 1e-06 500 17 1 4 [+] picture button
NR1D2 (1 of 2) ENSGACT00000010599 Orphan nuclear receptor NR1D2 (Rev-erb-beta) (EAR-1R) (Orphan nuclear hormone receptor BD73). [Source:Uniprot/SWISSPROT;Acc:Q14995]
19.2063 -18.82 2.02976e-06 500 8 3 22 [+] picture button
FLRT3 ENSGACT00000006049 Leucine-rich repeat transmembrane protein FLRT3 precursor (Fibronectin-like domain-containing leucine-rich transmembrane protein 3). [Source:Uniprot/SWISSPROT;Acc:Q9NZU0]
16.7758 -15.28 2.29369e-06 500 8 10 12 [+] picture button
LIN7C ENSGACT00000020488 Lin-7 homolog C (Lin-7C) (Mammalian lin-seven protein 3) (MALS-3) (Vertebrate lin-7 homolog 3) (Veli-3 protein). [Source:Uniprot/SWISSPROT;Acc:Q9NUP9]
17.6039 -16.21 3.26263e-06 500 8 5 16 [+] picture button
C3orf32 (1 of 2) ENSGACT00000003540 Uncharacterized protein C3orf32. [Source:Uniprot/SWISSPROT;Acc:Q9Y2M2]
16.487 -11.8 3.311e-06 266 6 3 10 [+] picture button
STAU2 ENSGACT00000003623 Double-stranded RNA-binding protein Staufen homolog 2. [Source:Uniprot/SWISSPROT;Acc:Q9NUL3]
17.454 -16.78 3.517e-06 500 2 7 1 [+] picture button
ATP2B2 ENSGACT00000009541 Plasma membrane calcium-transporting ATPase 2 (EC 3.6.3.8) (PMCA2) (Plasma membrane calcium pump isoform 2) (Plasma membrane calcium ATPase isoform 2). [Source:Uniprot/SWISSPROT;Acc:Q01814]
17.1463 -17.52 4.11181e-06 500 3 2 3 [+] picture button
NP_001073935.1 (2 of 2) ENSGACT00000014476 galectin-3-binding protein-like [Source:RefSeq_peptide;Acc:NP_001073935]
17.1324 -15.05 4.40544e-06 500 8 3 9 [+] picture button
C2orf32 (2 of 2) ENSGACT00000015992 Uncharacterized protein C2orf32. [Source:Uniprot/SWISSPROT;Acc:Q96F85]
16.1459 -20.08 6.55663e-06 164 2 1 4 [+] picture button
DFFB ENSGACT00000007314 DNA fragmentation factor subunit beta (EC 3.-.-.-) (DNA fragmentation factor 40 kDa subunit) (DFF-40) (Caspase-activated deoxyribonuclease) (Caspase-activated DNase) (CAD) (Caspase-activated nuclease) (CPAN). [Source:Uniprot/SWISSPROT;Acc:O76075]
18.5909 -19.01 7.9514e-06 500 4 2 5 [+] picture button
INPPL1 ENSGACT00000010363 inositol polyphosphate phosphatase-like 1 [Source:RefSeq_peptide;Acc:NP_001558]
16.8715 -15.39 8.65527e-06 500 3 2 5 [+] picture button
SLC40A1 ENSGACT00000003573 Solute carrier family 40 member 1 (Ferroportin-1) (Iron-regulated transporter 1). [Source:Uniprot/SWISSPROT;Acc:Q9NP59]
15.9389 -16.19 9.06795e-06 500 8 2 9 [+] picture button
GNL3 ENSGACT00000000393 Guanine nucleotide-binding protein-like 3 (Nucleolar GTP-binding protein 3) (Nucleostemin) (E2-induced gene 3-protein) (Novel nucleolar protein 47) (NNP47). [Source:Uniprot/SWISSPROT;Acc:Q9BVP2]
17.4252 -12.33 9.72032e-06 372 4 1 10 [+] picture button
NP_001073942.1 ENSGACT00000016403 PREDICTED: similar to hypothetical protein FLJ14490 [Source:RefSeq_peptide_predicted;Acc:XP_371481] [from human gene ENSG00000173957]PREDICTED: similar to hypothetical protein FLJ14490 [Source:RefSeq_peptide_predicted;Acc:XP_371481] [from human gene ENSG00000173957] BY ORTHOLOGY TO:ENSXETT00000039480
18.9884 -20.46 1.33621e-05 273 7 2 10 [+] picture button
KPNA2 (1 of 2) ENSGACT00000009289 Importin alpha-2 subunit (Karyopherin alpha-2 subunit) (SRP1-alpha) (RAG cohort protein 1). [Source:Uniprot/SWISSPROT;Acc:P52292]
16.1459 -12.48 1.43407e-05 131 3 3 4 [+] picture button
TNFAIP8L3 ENSGACT00000022142 tumor necrosis factor, alpha-induced protein 8-like 3 [Source:RefSeq_peptide;Acc:NP_997264]
15.8147 -12.54 1.53077e-05 500 6 2 6 [+] picture button
USH1G (1 of 2) ENSGACT00000019133 Usher syndrome type-1G protein (Scaffold protein containing ankyrin repeats and SAM domain). [Source:Uniprot/SWISSPROT;Acc:Q495M9]
16.6565 -15.28 1.95197e-05 500 6 2 7 [+] picture button
ENTPD6 ENSGACT00000016107 Ectonucleoside triphosphate diphosphohydrolase 6 (EC 3.6.1.6) (NTPDase 6) (CD39 antigen-like 2). [Source:Uniprot/SWISSPROT;Acc:O75354]
16.341 -11.56 2.16564e-05 345 8 3 20 [+] picture button
KIAA0692 ENSGACT00000017133 ANK repeat and LEM domain-containing protein KIAA0692. [Source:Uniprot/SWISSPROT;Acc:Q86XL3]
18.1128 -19.87 2.38612e-05 500 6 3 7 [+] picture button
CYBA ENSGACT00000021084 Cytochrome b-245 light chain (p22 phagocyte B-cytochrome) (Neutrophil cytochrome b 22 kDa polypeptide) (p22-phox) (p22phox) (Cytochrome b(558) alpha chain) (Cytochrome b558 subunit alpha) (Superoxide- generating NADPH oxidase light chain subunit). [Source:Uniprot/SWISSPROT;Acc:P13498]
16.3419 -16.34 2.39184e-05 676 4 1 4 [+] picture button
DDX3X (1 of 2) ENSGACT00000010888 ATP-dependent RNA helicase DDX3Y (EC 3.6.1.-) (DEAD box protein 3, Y- chromosomal). [Source:Uniprot/SWISSPROT;Acc:O15523]
17.5162 -13.67 2.49599e-05 500 2 5 4 [+] picture button
PLEKHH1 ENSGACT00000014943 pleckstrin homology domain containing, family H (with MyTH4 domain) member 1 [Source:RefSeq_peptide;Acc:NP_065766]
16.6565 -15.23 2.664e-05 500 4 1 6 [+] picture button
NP_777577.1 ENSGACT00000020407 CDNA PSEC0197 fis, clone HEMBA1001490, weakly similar to PEROXISOMAL- COENZYME A SYNTHETASE (EC 6.-.-.-). [Source:Uniprot/SPTREMBL;Acc:Q8N2F7]
16.4829 -25.67 3.6502e-05 586 7 2 9 [+] picture button
GRIK4 ENSGACT00000011997 Glutamate receptor, ionotropic kainate 4 precursor (Glutamate receptor KA-1) (KA1) (Excitatory amino acid receptor 1) (EAA1). [Source:Uniprot/SWISSPROT;Acc:Q16099]
17.2892 -19.67 4.52617e-05 500 7 4 21 [+] picture button
C1orf32 (1 of 2) ENSGACT00000004166 Transmembrane and immunoglobulin domain-containing protein C1orf32. [Source:Uniprot/SWISSPROT;Acc:Q71H61]
18.2297 -13.91 4.56797e-05 500 5 1 9 [+] picture button
C8orf55 (2 of 2) ENSGACT00000022760 mesenchymal stem cell protein DSCD75 [Source:RefSeq_peptide;Acc:NP_057731]
16.3733 -17.97 4.90925e-05 216 5 2 11 [+] picture button
TTLL7 ENSGACT00000012686 Tubulin--tyrosine ligase-like protein 7 (Testis development protein NYD-SP30). [Source:Uniprot/SWISSPROT;Acc:Q6ZT98]
18.4834 -23.27 5.06253e-05 500 4 2 4 [+] picture button
TRIM3 (1 of 2) ENSGACT00000015483 Tripartite motif-containing protein 3 (RING finger protein 22) (Brain- expressed RING finger protein) (RING finger protein 97). [Source:Uniprot/SWISSPROT;Acc:O75382]
17.4088 -12.92 5.33997e-05 500 7 3 10 [+] picture button
THEX1 ENSGACT00000026564 3' histone mRNA exonuclease 1 (EC 3.1.-.-) (3'-5' exonuclease ERI1) (Eri-1 homolog) (Histone mRNA 3' end-specific exoribonuclease) (Protein 3'hExo) (HEXO). [Source:Uniprot/SWISSPROT;Acc:Q8IV48]
16.0866 -16.12 5.35944e-05 577 4 1 6 [+] picture button
C6orf111 ENSGACT00000006623 Splicing factor, arginine/serine-rich 130 (Serine-arginine-rich- splicing regulatory protein 130) (SRrp130) (SR-rich protein) (SR- related protein). [Source:Uniprot/SWISSPROT;Acc:Q8TF01]
16.1794 -12.45 5.57173e-05 500 9 5 17 [+] picture button
COQ4 ENSGACT00000022130 Ubiquinone biosynthesis protein COQ4 homolog (Coenzyme Q biosynthesis protein 4 homolog). [Source:Uniprot/SWISSPROT;Acc:Q9Y3A0]
17.1038 -11.83 5.95364e-05 437 6 1 11 [+] picture button
RHPN2 ENSGACT00000019671 Rhophilin-2 (GTP-Rho-binding protein 2) (76 kDa RhoB effector protein) (p76RBE). [Source:Uniprot/SWISSPROT;Acc:Q8IUC4]
16.2909 -19.4 6.18439e-05 500 7 4 14 [+] picture button
EED ENSGACT00000019753 embryonic ectoderm development isoform b [Source:RefSeq_peptide;Acc:NP_694536]
16.8228 -13.7 6.23704e-05 500 6 5 6 [+] picture button
MINK1 ENSGACT00000027010 Misshapen-like kinase 1 (EC 2.7.11.1) (Mitogen-activated protein kinase kinase kinase kinase 6) (MAPK/ERK kinase kinase kinase 6) (MEK kinase kinase 6) (MEKKK 6) (Misshapen/NIK-related kinase) (GCK family kinase MiNK). [Source:Uniprot/SWISSPROT;Acc:Q8N4C8]
16.0118 -12.94 6.33332e-05 500 5 3 6 [+] picture button
UEVLD ENSGACT00000014854 Ubiquitin-conjugating enzyme E2 variant 3 (UEV-3) (EV and lactate/malate dehydrogenase domain-containing protein). [Source:Uniprot/SWISSPROT;Acc:Q8IX04]
16.3164 -18.23 6.89668e-05 537 5 1 6 [+] picture button
KIF14 ENSGACT00000011755 Kinesin-like protein KIF14. [Source:Uniprot/SWISSPROT;Acc:Q15058]
15.8736 -10.85 7.0111e-05 500 4 3 6 [+] picture button
ME2 ENSGACT00000009675 NAD-dependent malic enzyme, mitochondrial precursor (EC 1.1.1.38) (NAD-ME) (Malic enzyme 2). [Source:Uniprot/SWISSPROT;Acc:P23368]
16.9231 -14.28 7.12498e-05 500 4 1 5 [+] picture button
TUSC3 ENSGACT00000024606 Tumor suppressor candidate 3 (Protein N33). [Source:Uniprot/SWISSPROT;Acc:Q13454]
17.0555 -13.89 7.24952e-05 173 2 3 5 [+] picture button
TMEM43 ENSGACT00000001566 Transmembrane protein 43. [Source:Uniprot/SWISSPROT;Acc:Q9BTV4]
17.3966 -19.24 7.30108e-05 304 6 2 9 [+] picture button
GNPDA2 ENSGACT00000002543 glucosamine-6-phosphate deaminase 2 [Source:RefSeq_peptide;Acc:NP_612208]
16.6565 -20.39 7.3262e-05 500 4 1 6 [+] picture button
HOXA5 ENSGACT00000009434 Homeobox protein Hox-A5 (Hox-1C). [Source:Uniprot/SWISSPROT;Acc:P20719]
16.9766 -17.13 7.9675e-05 500 5 6 7 [+] picture button
PSMD2 ENSGACT00000000279 26S proteasome non-ATPase regulatory subunit 2 (26S proteasome regulatory subunit RPN1) (26S proteasome regulatory subunit S2) (26S proteasome subunit p97) (Tumor necrosis factor type 1 receptor- associated protein 2) (55.11 protein). [Source:Uniprot/SWISSPROT;Acc:Q13200]
18.3225 -18.67 7.98325e-05 497 6 2 5 [+] picture button
TTC35 ENSGACT00000007112 Tetratricopeptide repeat protein 35 (TPR repeat protein 35). [Source:Uniprot/SWISSPROT;Acc:Q15006]
16.6501 -14.44 8.08594e-05 454 6 4 11 [+] picture button

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Download table: GFF TXT
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