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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Gasterosteus aculeatus and dre-miR-139

835 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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PDE3A (2 of 2) ENSGACT00000013279 cGMP-inhibited 3',5'-cyclic phosphodiesterase A (EC 3.1.4.17) (Cyclic GMP-inhibited phosphodiesterase A) (CGI-PDE A). [Source:Uniprot/SWISSPROT;Acc:Q14432]
18.7168 -24.42 4.15124e-12 500 4 11 5 [+] picture button
PDE4A (1 of 2) ENSGACT00000018291 cAMP-specific 3',5'-cyclic phosphodiesterase 4A (EC 3.1.4.17) (DPDE2) (PDE46). [Source:Uniprot/SWISSPROT;Acc:P27815]
17.8247 -20.55 3.19542e-09 500 4 2 4 [+] picture button
TBC1D1 ENSGACT00000021323 TBC1 domain family member 1. [Source:Uniprot/SWISSPROT;Acc:Q86TI0]
16.6633 -15.51 4.28159e-07 500 4 1 5 [+] picture button
LSM1 ENSGACT00000015592 U6 snRNA-associated Sm-like protein LSm1 (Small nuclear ribonuclear CaSm) (Cancer-associated Sm-like). [Source:Uniprot/SWISSPROT;Acc:O15116]
17.463 -16.54 6.31414e-07 500 8 4 13 [+] picture button
ZBTB26 ENSGACT00000017675 Zinc finger and BTB domain-containing protein 26 (Zinc finger protein 481) (Zinc finger protein Bioref). [Source:Uniprot/SWISSPROT;Acc:Q9HCK0]
17.1335 -15.61 8.84356e-07 500 4 1 4 [+] picture button
ENSGACT00000014075 NOT ANNOTATED
17.1335 -17.59 1e-06 500 17 1 4 [+] picture button
PDE3A (1 of 2) ENSGACT00000011566 cGMP-inhibited 3',5'-cyclic phosphodiesterase A (EC 3.1.4.17) (Cyclic GMP-inhibited phosphodiesterase A) (CGI-PDE A). [Source:Uniprot/SWISSPROT;Acc:Q14432]
18.122 -23.08 1.95121e-06 500 3 4 5 [+] picture button
ENSGACT00000004388 Homolog of Homo sapiens "Mesenchymal stem cell protein DSC43 [Source:UniGene;Acc:Hs.148584]"Homolog of Homo sapiens "Mesenchymal stem cell protein DSC43 [Source:UniGene;Acc:Hs.148584]" BY ORTHOLOGY TO:SINFRUT00000138650
16.804 -17.6 2.12121e-06 500 5 3 6 [+] picture button
NOD1 ENSGACT00000005964 Nucleotide-binding oligomerization domain-containing protein 1 (Caspase recruitment domain-containing protein 4). [Source:Uniprot/SWISSPROT;Acc:Q9Y239]
16.2548 -15.71 2.33713e-06 500 9 2 12 [+] picture button
NR1D2 (1 of 2) ENSGACT00000010599 Orphan nuclear receptor NR1D2 (Rev-erb-beta) (EAR-1R) (Orphan nuclear hormone receptor BD73). [Source:Uniprot/SWISSPROT;Acc:Q14995]
17.3044 -18.49 2.98064e-06 500 8 3 22 [+] picture button
RANBP5 ENSGACT00000019588 Importin beta-3 (Karyopherin beta-3) (Ran-binding protein 5) (RanBP5). [Source:Uniprot/SWISSPROT;Acc:O00410]
17.1004 -20.6 6.25433e-06 500 7 3 7 [+] picture button
RAVER2 ENSGACT00000009468 Ribonucleoprotein PTB-binding 2 (Protein raver-2). [Source:Uniprot/SWISSPROT;Acc:Q9HCJ3]
16.6942 -15.52 6.65366e-06 500 8 3 9 [+] picture button
IL24 ENSGACT00000000507 Interleukin-24 precursor (Suppression of tumorigenicity 16 protein) (Melanoma differentiation-associated gene 7 protein) (MDA-7). [Source:Uniprot/SWISSPROT;Acc:Q13007]
15.9254 -12.97 7.47573e-06 500 4 1 5 [+] picture button
ASCC3L1 ENSGACT00000015226 U5 small nuclear ribonucleoprotein 200 kDa helicase (EC 3.6.1.-) (U5 snRNP-specific 200 kDa protein) (U5-200KD) (Activating signal cointegrator 1 complex subunit 3-like 1) (BRR2 homolog). [Source:Uniprot/SWISSPROT;Acc:O75643]
16.9826 -12.38 1.01185e-05 359 7 2 12 [+] picture button
NP_775813.1 ENSGACT00000012555 lamina ancestor CG10645-PB, isoform B [Source:RefSeq_peptide;Acc:NP_523933]lamina ancestor CG10645-PB, isoform B [Source:RefSeq_peptide;Acc:NP_523933] BY ORTHOLOGY TO:CG10645-RC
16.6585 -12.58 1.09558e-05 401 5 2 7 [+] picture button
ILK (1 of 2) ENSGACT00000015051 Integrin-linked protein kinase (EC 2.7.11.1) (ILK-1) (ILK-2) (59 kDa serine/threonine-protein kinase) (p59ILK). [Source:Uniprot/SWISSPROT;Acc:Q13418]
16.3972 -14.93 1.09727e-05 500 6 6 12 [+] picture button
MAPK6 ENSGACT00000019835 Mitogen-activated protein kinase 6 (EC 2.7.11.24) (Extracellular signal-regulated kinase 3) (ERK-3) (MAP kinase isoform p97) (p97- MAPK). [Source:Uniprot/SWISSPROT;Acc:Q16659]
18.5565 -18.53 1.63378e-05 500 6 4 9 [+] picture button
Q9BZU6_HUMAN ENSGACT00000007762 PNAS-13. [Source:Uniprot/SPTREMBL;Acc:Q9BZU6]
16.3131 -13.2 1.80698e-05 500 8 1 6 [+] picture button
BATF ENSGACT00000014033 ATF-like basic leucine zipper transcriptional factor B-ATF (SF-HT- activated gene 2) (SFA-2). [Source:Uniprot/SWISSPROT;Acc:Q16520]
15.9608 -20.03 1.85846e-05 500 3 4 6 [+] picture button
GTF2A1 ENSGACT00000006932 Transcription initiation factor IIA subunit 1 (General transcription factor IIA1) (TFIIA-42) (TFIIAL) [Contains: Transcription initiation factor IIA alpha chain (TFIIA p35 subunit); Transcription initiation factor IIA beta chain (TFIIA p19 subunit)]. [Source:Uniprot/SWISSPROT;Acc:P52655]
17.6847 -20.02 1.98012e-05 500 3 2 5 [+] picture button
NP_060680.2 ENSGACT00000004625 Novel protein containing a carbohydrate kinase domain. [Source:Uniprot/SPTREMBL;Acc:Q5T9X3]
16.5229 -13.64 2.03599e-05 185 5 1 7 [+] picture button
NAP1L3 ENSGACT00000025773 Nucleosome assembly protein 1-like 3. [Source:Uniprot/SWISSPROT;Acc:Q99457]
16.8863 -18.77 2.34516e-05 772 5 1 5 [+] picture button
ENDOG ENSGACT00000014105 Endonuclease G, mitochondrial precursor (EC 3.1.30.-) (Endo G). [Source:Uniprot/SWISSPROT;Acc:Q14249]
17.3418 -13.38 2.47985e-05 377 8 1 9 [+] picture button
TACC2 ENSGACT00000006709 Transforming acidic coiled-coil-containing protein 2 (Anti Zuai-1) (AZU-1). [Source:Uniprot/SWISSPROT;Acc:O95359]
16.3756 -14.03 2.50507e-05 810 5 4 8 [+] picture button
SMOX ENSGACT00000023329 Spermine oxidase (EC 1.5.3.-) (Polyamine oxidase 1) (PAO-1) (PAOh1). [Source:Uniprot/SWISSPROT;Acc:Q9NWM0]
18.0553 -16.63 2.6332e-05 340 8 5 18 [+] picture button
ACVR2B (1 of 2) ENSGACT00000022089 Activin receptor type-2B precursor (EC 2.7.11.30) (Activin receptor type IIB) (ACTR-IIB). [Source:Uniprot/SWISSPROT;Acc:Q13705]
16.2548 -12.12 2.70255e-05 500 5 4 7 [+] picture button
CYR61 ENSGACT00000008888 Protein CYR61 precursor (Cysteine-rich, angiogenic inducer, 61) (Insulin-like growth factor-binding protein 10) (Protein GIG1). [Source:Uniprot/SWISSPROT;Acc:O00622]
16.9138 -16.67 2.86558e-05 500 7 6 10 [+] picture button
RAB30 ENSGACT00000015932 Ras-related protein Rab-30. [Source:Uniprot/SWISSPROT;Acc:Q15771]
17.9192 -15.81 3.02278e-05 150 5 3 6 [+] picture button
CCT5 ENSGACT00000003490 T-complex protein 1 subunit epsilon (TCP-1-epsilon) (CCT-epsilon). [Source:Uniprot/SWISSPROT;Acc:P48643]
16.8719 -14.72 3.17994e-05 118 2 3 3 [+] picture button
SUV420H1 ENSGACT00000023149 Histone-lysine N-methyltransferase SUV420H1 (EC 2.1.1.43) (Suppressor of variegation 4-20 homolog 1) (Suv4-20h1) (Su(var)4-20 homolog 1). [Source:Uniprot/SWISSPROT;Acc:Q4FZB7]
16.804 -16.89 3.30685e-05 500 7 4 7 [+] picture button
CWF19L2 ENSGACT00000010842 CWF19-like 2, cell cycle control [Source:RefSeq_peptide;Acc:NP_689647]
17.9192 -18.46 4.2103e-05 99 5 1 7 [+] picture button
NUDT9 ENSGACT00000017397 ADP-ribose pyrophosphatase, mitochondrial precursor (EC 3.6.1.13) (ADP-ribose diphosphatase) (Adenosine diphosphoribose pyrophosphatase) (ADPR-PPase) (ADP-ribose phosphohydrolase) (Nucleoside diphosphate- linked moiety X motif 9) (Nudix motif 9). [Source:Uniprot/SWISSPROT;Acc:Q9BW91]
17.5728 -13.91 4.34017e-05 500 5 2 7 [+] picture button
FAM130A2 ENSGACT00000007128 TGF-beta-induced apoptosis protein 2 (TAIP-2). [Source:Uniprot/SWISSPROT;Acc:Q8WYN3]
18.5613 -22.39 4.54424e-05 500 5 6 15 [+] picture button
CTSA ENSGACT00000004262 Lysosomal protective protein precursor (EC 3.4.16.5) (Cathepsin A) (Carboxypeptidase C) (Protective protein for beta-galactosidase) [Contains: Lysosomal protective protein 32 kDa chain; Lysosomal protective protein 20 kDa chain]. [Source:Uniprot/SWISSPROT;Acc:P10619]
16.6392 -19.27 5.14904e-05 235 4 4 5 [+] picture button
ENSGACT00000009389 Gallus gallus [Source:RefSeq_dna;Acc:NM_204455]Gallus gallus [Source:RefSeq_dna;Acc:NM_204455] BY ORTHOLOGY TO:ENSGALT00000004802
18.5009 -15.88 5.26671e-05 230 6 3 6 [+] picture button
ST6GALNAC4 ENSGACT00000021172 Alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3-N-acetyl- galactosaminide alpha-2,6-sialyltransferase (EC 2.4.99.7) (NeuAc- alpha-2,3-Gal-beta-1,3-GalNAc-alpha-2,6-sialyltransferase) (ST6GalNAc IV) (Sialyltransferase 7D) (Sialyltransferase 3C). [Source:Uniprot/SWISSPROT;Acc:Q9H4F1]
15.9733 -13.47 5.61531e-05 500 7 1 12 [+] picture button
WDR1 ENSGACT00000012063 WD repeat protein 1 (Actin-interacting protein 1) (AIP1) (NORI-1). [Source:Uniprot/SWISSPROT;Acc:O75083]
17.8028 -18.01 5.77304e-05 109 4 3 5 [+] picture button
GLULD1 ENSGACT00000026199 Glutamate--ammonia ligase domain-containing protein 1 (Lengsin) (Lens glutamine synthase-like). [Source:Uniprot/SWISSPROT;Acc:Q5TDP6]
17.2739 -19.53 5.82427e-05 500 5 2 5 [+] picture button
ADARB2 (2 of 2) ENSGACT00000023135 Double-stranded RNA-specific editase B2 (EC 3.5.-.-) (dsRNA adenosine deaminase B2) (RNA-dependent adenosine deaminase 3) (RNA-editing deaminase 2) (RNA-editing enzyme 2). [Source:Uniprot/SWISSPROT;Acc:Q9NS39]
16.0352 -13.24 6.33722e-05 500 3 1 3 [+] picture button
MRPS28 ENSGACT00000026391 Mitochondrial 28S ribosomal protein S28 (S28mt) (MRP-S28) (MRP-S35). [Source:Uniprot/SWISSPROT;Acc:Q9Y2Q9]
16.5843 -15.45 6.81049e-05 500 9 2 11 [+] picture button
ENSGACT00000014737 Homolog of Homo sapiens "Sal-like protein 4 [Source:IPI;Acc:IPI00007032]"Homolog of Homo sapiens "Sal-like protein 4 [Source:IPI;Acc:IPI00007032]" BY ORTHOLOGY TO:SINFRUT00000162011
18.0504 -19.98 6.83199e-05 500 5 5 7 [+] picture button
HEXDC ENSGACT00000007014 hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing [Source:RefSeq_peptide;Acc:NP_775891]
16.8719 -9.74 6.85252e-05 95 2 1 3 [+] picture button
NP_001073942.1 ENSGACT00000016403 PREDICTED: similar to hypothetical protein FLJ14490 [Source:RefSeq_peptide_predicted;Acc:XP_371481] [from human gene ENSG00000173957]PREDICTED: similar to hypothetical protein FLJ14490 [Source:RefSeq_peptide_predicted;Acc:XP_371481] [from human gene ENSG00000173957] BY ORTHOLOGY TO:ENSXETT00000039480
16.7556 -14.38 6.86024e-05 273 7 2 10 [+] picture button
SF3B2 ENSGACT00000025189 Splicing factor 3B subunit 2 (Spliceosome-associated protein 145) (SAP 145) (SF3b150) (Pre-mRNA-splicing factor SF3b 145 kDa subunit). [Source:Uniprot/SWISSPROT;Acc:Q13435]
16.0574 -11.07 6.98973e-05 251 3 2 3 [+] picture button
WWC3 ENSGACT00000018565 WWC family member 3. [Source:Uniprot/SWISSPROT;Acc:Q9ULE0]
16.4486 -14.22 7.60039e-05 564 7 10 12 [+] picture button
CKAP4 ENSGACT00000026277 Cytoskeleton-associated protein 4 (63 kDa membrane protein) (p63). [Source:Uniprot/SWISSPROT;Acc:Q07065]
17.3887 -17.75 7.62598e-05 500 7 2 9 [+] picture button
GATA1 ENSGACT00000013519 Erythroid transcription factor (GATA-binding factor 1) (GATA-1) (Eryf1) (GF-1) (NF-E1 DNA-binding protein). [Source:Uniprot/SWISSPROT;Acc:P15976]
16.9528 -13.38 7.66914e-05 324 7 2 8 [+] picture button
F3 (1 of 2) ENSGACT00000000115 Tissue factor precursor (TF) (Coagulation factor III) (Thromboplastin) (CD142 antigen). [Source:Uniprot/SWISSPROT;Acc:P13726]
16.3431 -13.89 7.68185e-05 491 10 3 11 [+] picture button
DENR ENSGACT00000020641 Density-regulated protein (DRP) (Protein DRP1) (Smooth muscle cell- associated protein 3) (SMAP-3). [Source:Uniprot/SWISSPROT;Acc:O43583]
17.4537 -14.97 8.23897e-05 280 3 3 8 [+] picture button
PTAFR ENSGACT00000012785 Platelet-activating factor receptor (PAF-R). [Source:Uniprot/SWISSPROT;Acc:P25105]
17.463 -19.4 9.86559e-05 500 6 1 7 [+] picture button

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Download table: GFF TXT
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