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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Danio rerio and xtr-miR-98

774 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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zgc:112182 ENSDART00000023388 Ubiquitin thioesterase OTU1 (EC 3.1.2.-). [Source:Uniprot/SWISSPROT;Acc:Q567B1]
19.557 -24.35 0.000000000000717061 266 6 3 8 [+] picture button
XR_029429.1 ENSDART00000074378 similar to LOC373796 protein (LOC797900), mRNA [Source:RefSeq_dna;Acc:XR_029429]
16.192 -16.01 0.0000000659807 700 6 1 7 [+] picture button
LOC567864 ENSDART00000075967 zinc finger, FYVE domain containing 26 [Source:RefSeq_peptide;Acc:NP_056161]zinc finger, FYVE domain containing 26 [Source:RefSeq_peptide;Acc:NP_056161] BY ORTHOLOGY TO:ENSMODT00000012851
16.3022 -16.29 0.000000194638 700 8 2 8 [+] picture button
LOC562671 ENSDART00000102363 supercoiling factor CG9148-PB, isoform B [Source:RefSeq_peptide;Acc:NP_477393]supercoiling factor CG9148-PB, isoform B [Source:RefSeq_peptide;Acc:NP_477393] BY ORTHOLOGY TO:CG9148-RA
16.4901 -20.48 0.000000329349 700 8 3 8 [+] picture button
tarbp2 ENSDART00000103455 TAR (HIV) RNA binding protein 2 [Source:RefSeq_peptide;Acc:NP_956291]
15.8036 -12.96 0.000000498518 747 6 1 8 [+] picture button
A2BIH4_DANRE ENSDART00000099848 Novel protein similar to vertebrate zinc finger protein 644 (ZNF644). [Source:Uniprot/SPTREMBL;Acc:A2BIH4]
16.1894 -18.01 0.00000057765 700 5 2 8 [+] picture button
acadvl ENSDART00000023089 acyl-Coenzyme A dehydrogenase, very long chain [Source:RefSeq_peptide;Acc:NP_997776]
16.7144 -13.67 0.000000605904 239 4 1 12 [+] picture button
A0PJR6_DANRE ENSDART00000100411 Hypothetical protein. [Source:Uniprot/SPTREMBL;Acc:A0PJR6]
16.179 -13.9 0.000000613226 700 5 1 7 [+] picture button
gpr137bb ENSDART00000054183 G protein-coupled receptor 137bb [Source:RefSeq_peptide;Acc:NP_001002691]
18.3351 -23.72 0.000000862574 393 11 4 16 [+] picture button
WDR7 ENSDART00000082419 WD repeat protein 7 (TGF-beta resistance-associated protein TRAG) (Rabconnectin-3 beta). [Source:Uniprot/SWISSPROT;Acc:Q9Y4E6]
17.624 -18.83 0.000001 700 8 1 5 [+] picture button
A2BHG4_DANRE ENSDART00000076845 Novel protein similar to vertebrate Fraser syndrome 1 homolog (Human) (FRAS1) (Fragment). [Source:Uniprot/SPTREMBL;Acc:A2BHG4]
17.1124 -21.73 0.00000151047 700 8 7 12 [+] picture button
zgc:103539 ENSDART00000017968 hypothetical protein LOC449815 [Source:RefSeq_peptide;Acc:NP_001005988]
19.0705 -18.05 0.00000349045 497 7 2 8 [+] picture button
riok3 ENSDART00000098827 RIO kinase 3 [Source:RefSeq_peptide;Acc:NP_001003614]
17.0125 -19.06 0.00000368804 700 6 1 13 [+] picture button
atp2a2a ENSDART00000086447 ATPase, Ca++ transporting, cardiac muscle, slow twitch 2 [Source:RefSeq_peptide;Acc:NP_957259]
15.8461 -16.81 0.00000383298 700 3 9 5 [+] picture button
skap2 ENSDART00000052660 Src kinase-associated phosphoprotein 2 (Src family-associated phosphoprotein 2). [Source:Uniprot/SWISSPROT;Acc:Q6PG29]
16.5695 -14.67 0.0000137361 305 12 2 22 [+] picture button
pygo2 ENSDART00000104731 pygopus homolog 2 [Source:RefSeq_peptide;Acc:NP_001028283]
19.0019 -26.95 0.0000147822 700 6 2 12 [+] picture button
SLC9A6 ENSDART00000026195 Sodium/hydrogen exchanger 6 (Na(+)/H(+) exchanger 6) (NHE-6) (Solute carrier family 9 member 6). [Source:Uniprot/SWISSPROT;Acc:Q92581]
15.9403 -21.96 0.0000184108 591 8 1 10 [+] picture button
LOC556921 ENSDART00000092190 ADP-ribosylation factor-like protein 14 (ADP-ribosylation factor 7). [Source:Uniprot/SWISSPROT;Acc:Q8N4G2]ADP-ribosylation factor-like protein 14 (ADP-ribosylation factor 7). [Source:Uniprot/SWISSPROT;Acc:Q8N4G2] BY ORTHOLOGY TO:ENSGALT00000015530
17.3457 -20.01 0.0000264921 700 3 1 3 [+] picture button
EZH1 ENSDART00000039170 Enhancer of zeste homolog 1 (ENX-2). [Source:Uniprot/SWISSPROT;Acc:Q92800]
16.5015 -14.45 0.000036041 700 7 2 11 [+] picture button
foxh1 ENSDART00000078021 Forkhead box protein H1 (Forkhead activin signal transducer 1) (Fast- 1) (Schmalspur protein). [Source:Uniprot/SWISSPROT;Acc:Q9I9E1]
16.7207 -21.11 0.0000437869 1503 2 3 3 [+] picture button
mt-atp6 ENSDART00000093612 ATP synthase a chain (EC 3.6.3.14) (ATPase protein 6). [Source:Uniprot/SWISSPROT;Acc:Q9MIY5]
18.3394 -20.62 0.0000513284 700 7 5 8 [+] picture button
LOC562144 ENSDART00000084417 Mitochondrial import inner membrane translocase subunit Tim17-B. [Source:Uniprot/SWISSPROT;Acc:O60830]Mitochondrial import inner membrane translocase subunit Tim17-B. [Source:Uniprot/SWISSPROT;Acc:O60830] BY ORTHOLOGY TO:ENSMMUT00000006430
16.905 -18.15 0.0000661622 700 8 1 10 [+] picture button
tpi1a ENSDART00000037007 triosephosphate isomerase 1a [Source:RefSeq_peptide;Acc:NP_705953]
18.4228 -18.09 0.0000890966 393 12 1 17 [+] picture button
LOC572040 ENSDART00000018348 5-hydroxytryptamine 1E receptor (5-HT-1E) (Serotonin receptor 1E) (5- HT1E) (S31). [Source:Uniprot/SWISSPROT;Acc:P28566]5-hydroxytryptamine 1E receptor (5-HT-1E) (Serotonin receptor 1E) (5- HT1E) (S31). [Source:Uniprot/SWISSPROT;Acc:P28566] BY ORTHOLOGY TO:ENST00000305344
16.4901 -15.53 0.0000939616 700 5 5 5 [+] picture button
mhc1ze ENSDART00000105021 MHC class I antigen (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q8MHB2]
16.4901 -17.44 0.0000940258 700 8 1 8 [+] picture button
ets1b ENSDART00000045403 v-ets erythroblastosis virus E26 oncogene homolog 1b [Source:RefSeq_peptide;Acc:NP_001032452]
17.6173 -12.88 0.0000995984 301 10 2 16 [+] picture button
si:dkey-161f12.1 ENSDART00000023963 Novel protein similar to vertebrate DEAD (Asp-Glu-Ala-Asp) box polypeptide 1 (DDX1) (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q5RIZ5]
17.6367 -19.57 0.000165214 700 3 1 5 [+] picture button
LOC561567 ENSDART00000084834 SLIT-ROBO Rho GTPase-activating protein 3 (srGAP3) (srGAP2) (WAVE- associated Rac GTPase-activating protein) (WRP) (Mental disorder- associated GAP) (Rho GTPase-activating protein 14). [Source:Uniprot/SWISSPROT;Acc:O43295]SLIT-ROBO Rho GTPase-activating protein 3 (srGAP3) (srGAP2) (WAVE- associated Rac GTPase-activating protein) (WRP) (Mental disorder- associated GAP) (Rho GTPase-activating protein 14). [Source:Uniprot/SWISSPROT;Acc:O43295] BY ORTHOLOGY TO:ENSGACT00000001197
15.9716 -15.43 0.000168297 700 5 1 6 [+] picture button
ndpkz6 ENSDART00000027762 nucleoside diphosphate kinase-Z6 [Source:RefSeq_peptide;Acc:NP_571672]
15.8047 -15.54 0.000169609 223 5 2 7 [+] picture button
LOC794732 ENSDART00000097290 Tetratricopeptide repeat protein 16 (TPR repeat protein 16). [Source:Uniprot/SWISSPROT;Acc:Q8NEE8]Tetratricopeptide repeat protein 16 (TPR repeat protein 16). [Source:Uniprot/SWISSPROT;Acc:Q8NEE8] BY ORTHOLOGY TO:ENSGALT00000007997
17.3198 -19.35 0.000191535 700 6 1 7 [+] picture button
wdr16 ENSDART00000060549 hypothetical protein LOC553666 [Source:RefSeq_peptide;Acc:NP_001018475]
16.487 -13.93 0.000263045 256 6 1 12 [+] picture button
C4orf8 ENSDART00000053162 Uncharacterized protein C4orf8 (Protein IT14). [Source:Uniprot/SWISSPROT;Acc:P78312]
16.5654 -17.67 0.000265149 700 5 2 6 [+] picture button
zgc:153216 ENSDART00000087418 hypothetical protein LOC767722 [Source:RefSeq_peptide;Acc:NP_001070128]
16.1541 -13.94 0.000274323 433 9 2 19 [+] picture button
ck2a2 ENSDART00000020967 casein kinase 2 alpha 2 [Source:RefSeq_peptide;Acc:NP_571315]
17.2682 -18.3 0.000312041 531 6 1 10 [+] picture button
zgc:63673 ENSDART00000058147 hypothetical protein LOC393452 [Source:RefSeq_peptide;Acc:NP_956774]
16.9418 -14.23 0.000316335 216 4 5 7 [+] picture button
zgc:112443 ENSDART00000078523 hypothetical protein LOC550392 [Source:RefSeq_peptide;Acc:NP_001017697]
17.8229 -17.12 0.000321686 700 2 1 4 [+] picture button
a2bp1l ENSDART00000027364 ataxin 2-binding protein 1-like [Source:RefSeq_peptide;Acc:NP_999940]
16.5123 -18.37 0.00032796 700 5 1 6 [+] picture button
zgc:153327 ENSDART00000092082 hypothetical protein LOC767691 [Source:RefSeq_peptide;Acc:NP_001070097]
15.9931 -18.98 0.000363928 419 9 2 16 [+] picture button
zgc:101801 ENSDART00000062706 hypothetical protein LOC450031 [Source:RefSeq_peptide;Acc:NP_001006052]
16.6007 -14.32 0.000388334 318 5 1 7 [+] picture button
ENSDART00000080853 NOT ANNOTATED
17.2161 -20.81 0.000390591 700 3 1 3 [+] picture button
zgc:112330 ENSDART00000050729 hypothetical protein LOC573901 [Source:RefSeq_peptide;Acc:NP_001038696]
18.6473 -19.56 0.000406999 225 5 1 9 [+] picture button
zgc:55908 ENSDART00000005653 hypothetical protein LOC393152 [Source:RefSeq_peptide;Acc:NP_956477]
16.179 -18.17 0.000450557 700 7 1 11 [+] picture button
serpinc1 ENSDART00000062618 serine (or cysteine) proteinase inhibitor, clade C (antithrombin), member 1 [Source:RefSeq_peptide;Acc:NP_878283]
16.0147 -18.25 0.000450882 962 3 2 4 [+] picture button
LOC567921 ENSDART00000059250 Oxysterol-binding protein-related protein 3 (OSBP-related protein 3) (ORP-3). [Source:Uniprot/SWISSPROT;Acc:Q9H4L5]Oxysterol-binding protein-related protein 3 (OSBP-related protein 3) (ORP-3). [Source:Uniprot/SWISSPROT;Acc:Q9H4L5] BY ORTHOLOGY TO:ENSORLT00000009742
16.0753 -14.79 0.000452329 700 4 3 6 [+] picture button
dclre1c ENSDART00000067188 Artemis protein (EC 3.1.-.-) (DNA cross-link repair 1C protein). [Source:Uniprot/SWISSPROT;Acc:Q5RGE5]
15.7642 -18.84 0.000469765 700 7 1 9 [+] picture button
zgc:65782 ENSDART00000010261 RNA-binding protein pno1. [Source:Uniprot/SWISSPROT;Acc:Q6VEU3]
16.1459 -15.49 0.000476404 172 5 2 11 [+] picture button
zgc:101624 ENSDART00000082251 hypothetical protein LOC450071 [Source:RefSeq_peptide;Acc:NP_001006091]
15.8933 -13.26 0.000491209 345 8 2 18 [+] picture button
kal1a ENSDART00000007522 Kallmann syndrome 1a sequence [Source:RefSeq_peptide;Acc:NP_571433]
16.3199 -16.07 0.000514898 375 9 1 13 [+] picture button
prelid1 ENSDART00000080094 PRELI domain containing 1 [Source:RefSeq_peptide;Acc:NP_956660]
17.1825 -21.44 0.000524091 673 5 1 8 [+] picture button
NP_001077298.1 ENSDART00000085304 hypothetical protein LOC559556 [Source:RefSeq_peptide;Acc:NP_001077298]
16.1257 -15.24 0.000532277 700 8 2 10 [+] picture button

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Download table: GFF TXT
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