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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Danio rerio and dre-miR-27c

791 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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PDE3B ENSDART00000089640 cGMP-inhibited 3',5'-cyclic phosphodiesterase B (EC 3.1.4.17) (Cyclic GMP-inhibited phosphodiesterase B) (CGI-PDE B) (CGIPDE1) (CGIP1). [Source:Uniprot/SWISSPROT;Acc:Q13370]
17.4314 -21.72 2.61536e-11 700 7 11 8 [+] picture button
zgc:109926 ENSDART00000078824 hypothetical protein LOC554231 [Source:RefSeq_peptide;Acc:NP_001025247]
16.1655 -21.27 1.44108e-08 902 5 6 6 [+] picture button
zgc:92802 ENSDART00000057612 hypothetical protein LOC436796 [Source:RefSeq_peptide;Acc:NP_001002523]
16.6889 -13.87 6.33436e-08 190 4 3 6 [+] picture button
isl1 ENSDART00000010896 Insulin gene enhancer protein isl-1 (Islet-1). [Source:Uniprot/SWISSPROT;Acc:P53405]
16.7484 -14.85 4.03334e-07 1027 4 11 4 [+] picture button
LOC566014 ENSDART00000083537 RIKEN cDNA 1300010M03 gene [Source:MarkerSymbol;Acc:MGI:1915248]RIKEN cDNA 1300010M03 gene [Source:MarkerSymbol;Acc:MGI:1915248] BY ORTHOLOGY TO:ENSMUST00000017946
17.216 -18.95 4.73513e-07 700 4 5 7 [+] picture button
eya1 ENSDART00000012253 eyes absent homolog 1 [Source:RefSeq_peptide;Acc:NP_571268]
16.5746 -10.63 4.90753e-07 133 9 1 5 [+] picture button
LOC564436 ENSDART00000085253 Midline 1 (Opitz/BBB syndrome). [Source:Uniprot/SPTREMBL;Acc:Q6DEU6]Midline 1 (Opitz/BBB syndrome). [Source:Uniprot/SPTREMBL;Acc:Q6DEU6] BY ORTHOLOGY TO:ENSXETT00000034265
18.7586 -20.82 1e-06 700 6 1 4 [+] picture button
LOC558892 ENSDART00000074244 NOT ANNOTATED
18.2621 -16.49 1e-06 700 14 1 8 [+] picture button
LOC794963 ENSDART00000054069 UPF0184 protein C9orf16 (EST00098). [Source:Uniprot/SWISSPROT;Acc:Q9BUW7]UPF0184 protein C9orf16 (EST00098). [Source:Uniprot/SWISSPROT;Acc:Q9BUW7] BY ORTHOLOGY TO:ENSORLT00000008831
17.9392 -15.9 1e-06 700 13 1 12 [+] picture button
SAMD10 ENSDART00000083158 Sterile alpha motif domain-containing protein 10. [Source:Uniprot/SWISSPROT;Acc:Q9BYL1]
16.2809 -18.02 1.31543e-06 700 9 2 10 [+] picture button
zgc:123269 ENSDART00000061196 hypothetical protein LOC571995 [Source:RefSeq_peptide;Acc:NP_001032794]
17.894 -24.77 1.47855e-06 700 7 7 9 [+] picture button
dvl2 ENSDART00000012450 dishevelled 2, dsh homolog [Source:RefSeq_peptide;Acc:NP_997813]
18.2893 -13.64 2.56729e-06 278 9 5 15 [+] picture button
LOC796432 ENSDART00000063959 Protein FAM102A. [Source:Uniprot/SWISSPROT;Acc:Q5T9C2]Protein FAM102A. [Source:Uniprot/SWISSPROT;Acc:Q5T9C2] BY ORTHOLOGY TO:ENST00000300434
17.0927 -18.68 2.75501e-06 700 7 1 11 [+] picture button
zgc:158611 ENSDART00000084009 hypothetical protein LOC100009636 [Source:RefSeq_peptide;Acc:NP_001076474]
17.6034 -15.32 5.63074e-06 134 5 4 12 [+] picture button
tomm22 ENSDART00000066388 translocase of outer mitochondrial membrane 22 homolog [Source:RefSeq_peptide;Acc:NP_001001724]
16.8165 -17.26 5.93324e-06 685 6 2 6 [+] picture button
LOC566239 ENSDART00000083657 solute carrier family 35, member F3 [Source:RefSeq_peptide;Acc:NP_775779]solute carrier family 35, member F3 [Source:RefSeq_peptide;Acc:NP_775779] BY ORTHOLOGY TO:SINFRUT00000148235
16.9235 -15.29 6.44145e-06 700 4 1 4 [+] picture button
zgc:92723 ENSDART00000019053 hypothetical protein LOC436856 [Source:RefSeq_peptide;Acc:NP_001002583]
16.5034 -13.24 6.96164e-06 349 6 2 10 [+] picture button
ubr5 ENSDART00000035761 similar to E3 ubiquitin protein ligase, HECT domain containing, 1, (LOC100007900), partial mRNA [Source:RefSeq_dna;Acc:XR_030106]
16.1871 -16.1 9.3335e-06 700 5 4 7 [+] picture button
zgc:152929 ENSDART00000091587 hypothetical protein LOC767667 [Source:RefSeq_peptide;Acc:NP_001070074]
16.1841 -21.41 1.21854e-05 700 4 1 5 [+] picture button
XR_029337.1 ENSDART00000030811 hypothetical LOC564291 (LOC564291), mRNA [Source:RefSeq_dna;Acc:XR_029337]
17.5966 -21.85 1.48154e-05 700 6 1 10 [+] picture button
si:ch211-180b22.4 ENSDART00000074328 Novel protein similar to vertebrate dual specificity phosphatase 10 (DUSP10) (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q5SP01]
17.1954 -17.61 1.99325e-05 700 6 3 7 [+] picture button
crsp7 ENSDART00000003801 cofactor required for Sp1 transcriptional activation, subunit 7 [Source:RefSeq_peptide;Acc:NP_998224]
17.7925 -17.94 2.01435e-05 383 10 9 19 [+] picture button
fam76b ENSDART00000024815 Protein FAM76B. [Source:Uniprot/SWISSPROT;Acc:Q6PBM7]
16.2842 -14.23 2.02348e-05 711 6 3 9 [+] picture button
A2BGM6_DANRE ENSDART00000089014 Novel myosin head motor domain containing protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:A2BGM6]
17.3856 -19.32 2.85508e-05 700 4 2 6 [+] picture button
c1galt1c1 ENSDART00000052789 C1GALT1-specific chaperone 1 [Source:RefSeq_peptide;Acc:NP_955961]
17.4891 -16.93 2.89445e-05 201 4 3 11 [+] picture button
LOC100006533 ENSDART00000097873 Calcium and integrin-binding protein 3 (Kinase-interacting protein 3) (KIP 3). [Source:Uniprot/SWISSPROT;Acc:Q96Q77]Calcium and integrin-binding protein 3 (Kinase-interacting protein 3) (KIP 3). [Source:Uniprot/SWISSPROT;Acc:Q96Q77] BY ORTHOLOGY TO:ENSMODT00000018967
16.0952 -15.19 2.99551e-05 700 11 3 10 [+] picture button
tpr ENSDART00000017941 nuclear pore complex-associated protein TPR [Source:RefSeq_peptide;Acc:NP_001025294]
16.4626 -18.21 3.49474e-05 700 5 2 7 [+] picture button
zgc:110823 ENSDART00000033761 hypothetical protein LOC548343 [Source:RefSeq_peptide;Acc:NP_001017547]
17.7939 -23.26 3.5291e-05 700 11 2 14 [+] picture button
LOC560913 ENSDART00000048191 MP2K7_HUMAN Isoform 2 of O14733 - Homo sapiens (Human) [Source:Uniprot/Varsplic;Acc:O14733-2]MP2K7_HUMAN Isoform 2 of O14733 - Homo sapiens (Human) [Source:Uniprot/Varsplic;Acc:O14733-2] BY ORTHOLOGY TO:ENST00000322554
17.7457 -21.55 3.77486e-05 700 5 2 9 [+] picture button
A2CER7_DANRE ENSDART00000051392 Novel protein similar to human spinster protein (SPIN1). [Source:Uniprot/SPTREMBL;Acc:A2CER7]
16.3295 -13.42 3.99504e-05 700 6 4 5 [+] picture button
prkcq ENSDART00000046253 si:ch211-239o15.1 [Source:RefSeq_peptide;Acc:NP_001082839]
16.4574 -14.77 4.10878e-05 700 6 1 8 [+] picture button
LOC563979 ENSDART00000045684 Porcupine homolog. [Source:Uniprot/SPTREMBL;Acc:Q6P2X7]Porcupine homolog. [Source:Uniprot/SPTREMBL;Acc:Q6P2X7] BY ORTHOLOGY TO:ENSXETT00000017366
16.9869 -18.43 4.21344e-05 700 6 2 9 [+] picture button
glmnl ENSDART00000081094 glomulin, like [Source:RefSeq_peptide;Acc:NP_001007416]
16.6882 -16.94 6.22497e-05 637 5 1 5 [+] picture button
gata1 ENSDART00000013714 GATA-binding protein 1 [Source:RefSeq_peptide;Acc:NP_571309]
17.4174 -16.16 6.4769e-05 311 7 1 14 [+] picture button
grhpr ENSDART00000098640 glyoxylate reductase/hydroxypyruvate reductase [Source:RefSeq_peptide;Acc:NP_001018361]
17.2605 -13.31 6.56457e-05 270 6 3 9 [+] picture button
zgc:110285 ENSDART00000023797 Alkaline ceramidase 1 (EC 3.5.1.23) (Alkaline CDase-1) (AlkCDase 1) (Acylsphingosine deacylase 3) (N-acylsphingosine amidohydrolase 3). [Source:Uniprot/SWISSPROT;Acc:Q568I2]
16.1932 -22.53 6.86891e-05 595 9 1 14 [+] picture button
phex ENSDART00000090010 phosphate regulating gene with homologues to endopeptidases on the X chromosome [Source:RefSeq_peptide;Acc:NP_001082818]
16.5464 -17.56 6.9697e-05 700 6 2 7 [+] picture button
LOC565671 ENSDART00000013449 Carbohydrate sulfotransferase 13 (EC 2.8.2.5) (Chondroitin 4-O- sulfotransferase 3) (Chondroitin 4-sulfotransferase 3) (C4ST3) (C4ST- 3). [Source:Uniprot/SWISSPROT;Acc:Q8NET6]Carbohydrate sulfotransferase 13 (EC 2.8.2.5) (Chondroitin 4-O- sulfotransferase 3) (Chondroitin 4-sulfotransferase 3) (C4ST3) (C4ST- 3). [Source:Uniprot/SWISSPROT;Acc:Q8NET6] BY ORTHOLOGY TO:ENSCAFT00000006228
17.8207 -19.6 7.43821e-05 700 8 2 11 [+] picture button
XR_028981.1 ENSDART00000059376 hypothetical LOC557121 (LOC557121), mRNA [Source:RefSeq_dna;Acc:XR_028981]
16.3617 -18.76 7.50306e-05 700 5 1 7 [+] picture button
DEAF1 ENSDART00000093225 Deformed epidermal autoregulatory factor 1 homolog (Nuclear DEAF-1- related transcriptional regulator) (NUDR) (Suppressin) (Zinc finger MYND domain-containing protein 5). [Source:Uniprot/SWISSPROT;Acc:O75398]
18.1749 -16.16 7.84347e-05 700 8 3 10 [+] picture button
zgc:162229 ENSDART00000097654 hypothetical protein LOC100037370 [Source:RefSeq_peptide;Acc:NP_001082991]
17.0845 -15.03 8.02047e-05 700 3 1 4 [+] picture button
bad ENSDART00000077219 BCL2-antagonist of cell death [Source:RefSeq_peptide;Acc:NP_571654]
16.3838 -15.82 8.41799e-05 700 9 2 12 [+] picture button
zgc:85889 ENSDART00000046278 hypothetical protein LOC405872 [Source:RefSeq_peptide;Acc:NP_998101]
16.1903 -17.52 8.67967e-05 1074 3 1 3 [+] picture button
zgc:92707 ENSDART00000099131 Zgc:92707. [Source:Uniprot/SPTREMBL;Acc:Q6DGZ7]
16.2166 -20.01 8.94788e-05 700 6 1 8 [+] picture button
fnbp1l ENSDART00000045038 formin binding protein 1-like [Source:RefSeq_peptide;Acc:NP_001003634]
16.5746 -16.27 9.66218e-05 247 6 2 10 [+] picture button
LOC556658 ENSDART00000087297 NOT ANNOTATED
16.6743 -17.9 9.77404e-05 700 4 1 9 [+] picture button
LOC559978 ENSDART00000063244 Gastrin-releasing peptide precursor (GRP) [Contains: Neuromedin-C (GRP-10)]. [Source:Uniprot/SWISSPROT;Acc:P07492]Gastrin-releasing peptide precursor (GRP) [Contains: Neuromedin-C (GRP-10)]. [Source:Uniprot/SWISSPROT;Acc:P07492] BY ORTHOLOGY TO:ENST00000256857
16.1726 -12.99 9.91431e-05 700 7 1 8 [+] picture button
rpl37 ENSDART00000045284 ribosomal protein L37 [Source:RefSeq_peptide;Acc:NP_001002069]
16.7986 -16.61 0.000104618 700 4 1 2 [+] picture button
si:ch211-244p18.3 ENSDART00000103336 hypothetical protein LOC566768 [Source:RefSeq_peptide;Acc:NP_001038584]
16.9037 -19.86 0.000110341 700 7 2 8 [+] picture button
LOC561756 ENSDART00000089999 Beta-1,4-galactosyltransferase 3 (EC 2.4.1.-) (Beta-1,4-GalTase 3) (Beta4Gal-T3) (b4Gal-T3) (UDP-galactose:beta-N-acetylglucosamine beta- 1,4-galactosyltransferase 3) (UDP-Gal:beta-GlcNAc beta-1,4- galactosyltransferase 3) [Includes: N-acetyllactosamine s [Source:Uniprot/SWISSPROT;Acc:O60512]Beta-1,4-galactosyltransferase 3 (EC 2.4.1.-) (Beta-1,4-GalTase 3) (Beta4Gal-T3) (b4Gal-T3) (UDP-galactose:beta-N-acetylglucosamine beta- 1,4-galactosyltransferase 3) (UDP-Gal:beta-GlcNAc beta-1,4- galactosyltransferase 3) [Includes: N-acetyllactosamine s [Source:Uniprot/SWISSPROT;Acc:O60512] BY ORTHOLOGY TO:SINFRUT00000148278
16.4659 -21.15 0.000112754 700 6 2 7 [+] picture button

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Download table: GFF TXT
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