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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Danio rerio and dre-miR-130c

837 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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zgc:153017 ENSDART00000084381 hypothetical protein LOC568207 [Source:RefSeq_peptide;Acc:NP_001070641]
16.3596 -14.83 2.37054e-08 619 10 4 16 [+] picture button
rtcd1 ENSDART00000021666 RNA terminal phosphate cyclase domain 1 [Source:RefSeq_peptide;Acc:NP_955830]
17.2786 -16.41 5.93929e-08 747 7 3 7 [+] picture button
rbpms2 ENSDART00000024062 Cytoplasmic polyadenylation element-binding protein 1 (CPE-binding protein 1) (CPE-BP1) (CPEB-1) (Protein Zorba) (Zebrafish orb-type a) (ZOR-1) (Orb/CPEB-related RNA-binding protein). [Source:Uniprot/SWISSPROT;Acc:Q9YGX5]
17.4495 -19.21 2.08204e-07 1068 6 9 7 [+] picture button
hoxa3a ENSDART00000052633 Homeobox protein Hox-A3a. [Source:Uniprot/SWISSPROT;Acc:Q8AWZ2]
16.8975 -12.52 3.34752e-07 719 11 4 14 [+] picture button
fabp2 ENSDART00000027973 fatty acid binding protein 2, intestinal [Source:RefSeq_peptide;Acc:NP_571506]
17.1692 -14.78 6.77828e-07 205 8 2 20 [+] picture button
si:ch211-221n23.1 ENSDART00000056135 si:ch211-221n23.1 [Source:RefSeq_peptide;Acc:NP_001076421]
17.0706 -13.75 6.83861e-07 700 5 9 10 [+] picture button
psap ENSDART00000102618 prosaposin [Source:RefSeq_peptide;Acc:NP_571958]
16.4463 -13.89 7.69944e-07 700 7 6 10 [+] picture button
parp3 ENSDART00000022949 poly (ADP-ribose) polymerase family, member 3 [Source:RefSeq_peptide;Acc:NP_956795]
17.1968 -12.12 9.42003e-07 788 4 5 5 [+] picture button
emx2 ENSDART00000058036 empty spiracles homeobox 2 [Source:RefSeq_peptide;Acc:NP_571355]
16.2208 -11.65 1.14922e-06 660 8 8 12 [+] picture button
gpr98 ENSDART00000008043 G-protein coupled receptor 98 precursor (Monogenic audiogenic seizure susceptibility protein 1 homolog) (Very large G-protein coupled receptor 1). [Source:Uniprot/SWISSPROT;Acc:Q6JAN0]
16.7144 -12.02 6.34416e-06 254 5 8 12 [+] picture button
LOC564424 ENSDART00000089870 Sterol O-acyltransferase 1 (EC 2.3.1.26) (Cholesterol acyltransferase 1) (Acyl coenzyme A:cholesterol acyltransferase 1) (ACAT-1). [Source:Uniprot/SWISSPROT;Acc:P35610]Sterol O-acyltransferase 1 (EC 2.3.1.26) (Cholesterol acyltransferase 1) (Acyl coenzyme A:cholesterol acyltransferase 1) (ACAT-1). [Source:Uniprot/SWISSPROT;Acc:P35610] BY ORTHOLOGY TO:ENSOANT00000001516
18.1959 -18.57 7.63508e-06 700 8 1 12 [+] picture button
nudt9 ENSDART00000103744 nudix (nucleoside diphosphate linked moiety X)-type motif 9 [Source:RefSeq_peptide;Acc:NP_998517]
16.9511 -16.21 7.77568e-06 378 11 2 24 [+] picture button
gap43 ENSDART00000025036 growth associated protein 43 [Source:RefSeq_peptide;Acc:NP_571416]
18.0325 -19.25 9.42136e-06 700 7 2 14 [+] picture button
PTPRG ENSDART00000092552 Receptor-type tyrosine-protein phosphatase gamma precursor (EC 3.1.3.48) (Protein-tyrosine phosphatase gamma) (R-PTP-gamma). [Source:Uniprot/SWISSPROT;Acc:P23470]
16.042 -15.2 1.03356e-05 700 5 12 8 [+] picture button
dlx5a ENSDART00000062026 Homeobox protein Dlx5a (DLX-4) (Distal-less homeobox protein 5a). [Source:Uniprot/SWISSPROT;Acc:P50576]
17.1692 -12.36 1.21881e-05 283 6 11 10 [+] picture button
zgc:110308 ENSDART00000100567 Methionine adenosyltransferase 2 subunit beta (Methionine adenosyltransferase II beta) (MAT II beta) (Methionine adenosyltransferase 2 beta subunit). [Source:Uniprot/SWISSPROT;Acc:Q5BJJ6]
17.0367 -16.12 1.5859e-05 700 3 1 4 [+] picture button
chac1 ENSDART00000103330 Cation transport regulator-like protein 1. [Source:Uniprot/SWISSPROT;Acc:Q5SPB6]
16.8271 -9.01 1.74059e-05 455 11 5 16 [+] picture button
arfip1 ENSDART00000102501 ADP-ribosylation factor interacting protein 1 (arfaptin 1) [Source:RefSeq_peptide;Acc:NP_998533]
16.4423 -15.84 1.79271e-05 374 9 2 13 [+] picture button
zgc:77057 ENSDART00000063150 hypothetical protein LOC334166 [Source:RefSeq_peptide;Acc:NP_999870]
16.6921 -18.79 1.93736e-05 1212 2 4 3 [+] picture button
zgc:110130 ENSDART00000057278 Uncharacterized protein C2orf33 homolog A. [Source:Uniprot/SWISSPROT;Acc:Q503U3]
16.5408 -9.14 2.12467e-05 407 6 3 10 [+] picture button
A2BHH5_DANRE ENSDART00000082577 Novel protein. [Source:Uniprot/SPTREMBL;Acc:A2BHH5]
16.3562 -10.7 2.48277e-05 700 6 1 7 [+] picture button
wnt10a ENSDART00000007308 Protein Wnt-10a precursor. [Source:Uniprot/SWISSPROT;Acc:P43446]
18.5336 -16.23 2.70609e-05 256 6 2 11 [+] picture button
pgd ENSDART00000017728 phosphogluconate hydrogenase isoform 1 [Source:RefSeq_peptide;Acc:NP_998618]
17.831 -15.78 2.8035e-05 339 9 7 19 [+] picture button
LOC100006896 ENSDART00000033206 Collagenase 3 precursor (EC 3.4.24.-) (Matrix metalloproteinase-13) (MMP-13). [Source:Uniprot/SWISSPROT;Acc:P45452]Collagenase 3 precursor (EC 3.4.24.-) (Matrix metalloproteinase-13) (MMP-13). [Source:Uniprot/SWISSPROT;Acc:P45452] BY ORTHOLOGY TO:ENSGACT00000008559
17.4235 -14.14 2.98873e-05 700 5 1 7 [+] picture button
ube2d1 ENSDART00000048853 hypothetical protein LOC394085 [Source:RefSeq_peptide;Acc:NP_957404]
16.3953 -7.91 3.29119e-05 365 3 6 7 [+] picture button
si:ch211-242m18.4 ENSDART00000079695 si:ch211-242m18.4 (si:ch211-242m18.4), misc RNA [Source:RefSeq_dna;Acc:XR_030069]
17.2829 -12.71 3.58329e-05 165 5 1 7 [+] picture button
si:ch211-157m21.1 ENSDART00000058502 hypothetical protein LOC562048 [Source:RefSeq_peptide;Acc:NP_001025335]
16.6094 -10.02 3.62853e-05 700 5 11 8 [+] picture button
si:dkey-211c3.1 ENSDART00000089836 Novel protein similar to vertebrate Jumonji, AT rich interactive domain 2 (JARID2) (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q1LVC2]
17.1577 -17.22 3.6375e-05 700 8 5 17 [+] picture button
rln3 ENSDART00000087803 relaxin 3 [Source:RefSeq_peptide;Acc:NP_001032892]
17.5103 -15.02 3.75287e-05 195 5 2 11 [+] picture button
ENSDART00000105381 NOT ANNOTATED
17.3407 -13.73 4.62103e-05 700 6 1 7 [+] picture button
si:dkeyp-11g8.5 ENSDART00000061637 Novel protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q5RG85]
18.0961 -16.5 4.89188e-05 438 6 1 12 [+] picture button
arl6ip1 ENSDART00000058955 ADP-ribosylation factor-like 6 interacting protein [Source:RefSeq_peptide;Acc:NP_957406]
16.8266 -20.24 5.09469e-05 810 2 2 5 [+] picture button
nfil3 ENSDART00000063101 Nuclear factor interleukin-3 regulated protein. [Source:Uniprot/SWISSPROT;Acc:Q68EL6]
16.0322 -12.09 5.12291e-05 267 11 3 27 [+] picture button
nfe2l2 ENSDART00000062854 nuclear factor (erythroid-derived 2)-like 2 [Source:RefSeq_peptide;Acc:NP_878309]
17.5722 -11.66 5.62371e-05 395 10 4 15 [+] picture button
pvalb2 ENSDART00000010144 Parvalbumin-2 (Parvalbumin beta). [Source:Uniprot/SWISSPROT;Acc:Q9I8V0]
16.7144 -11.49 6.52083e-05 234 3 1 11 [+] picture button
zgc:56152 ENSDART00000031253 hypothetical protein LOC394173 [Source:RefSeq_peptide;Acc:NP_957492]
19.557 -20.06 6.72328e-05 179 5 1 7 [+] picture button
zgc:56164 ENSDART00000028161 hypothetical protein LOC394044 [Source:RefSeq_peptide;Acc:NP_957363]
16.2596 -8.7 6.98621e-05 207 2 2 7 [+] picture button
LOC100008537 ENSDART00000046613 vacuolar protein sorting-associated protein (vps13d)vacuolar protein sorting-associated protein (vps13d) BY ORTHOLOGY TO:AAEL007551-RA
16.4792 -14.78 7.80066e-05 700 5 1 10 [+] picture button
cpox ENSDART00000089172 coproporphyrinogen oxidase [Source:RefSeq_peptide;Acc:NP_001035183]
16.1407 -17.02 7.98037e-05 559 6 2 12 [+] picture button
PPEF1 ENSDART00000003475 Serine/threonine-protein phosphatase with EF-hands 1 (EC 3.1.3.16) (PPEF-1) (Protein phosphatase with EF calcium-binding domain) (PPEF) (Serine/threonine-protein phosphatase 7) (PP7). [Source:Uniprot/SWISSPROT;Acc:O14829]
16.7318 -17.34 8.20115e-05 700 4 1 7 [+] picture button
ENSDART00000089278 Homolog of Homo sapiens "KIAA1161 [Source:IPI;Acc:IPI00456649]"Homolog of Homo sapiens "KIAA1161 [Source:IPI;Acc:IPI00456649]" BY ORTHOLOGY TO:SINFRUT00000148515
17.0574 -11.96 8.3268e-05 700 6 4 8 [+] picture button
ppt1 ENSDART00000058491 palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile) [Source:RefSeq_peptide;Acc:NP_998504]
19.2158 -19.32 8.51123e-05 297 9 2 21 [+] picture button
zgc:65802 ENSDART00000103212 protective protein for beta-galactosidase [Source:RefSeq_peptide;Acc:NP_956844]
16.5939 -13.09 0.000102353 700 9 1 12 [+] picture button
zgc:110285 ENSDART00000023797 Alkaline ceramidase 1 (EC 3.5.1.23) (Alkaline CDase-1) (AlkCDase 1) (Acylsphingosine deacylase 3) (N-acylsphingosine amidohydrolase 3). [Source:Uniprot/SWISSPROT;Acc:Q568I2]
16.5396 -15.11 0.000103733 595 9 1 14 [+] picture button
penkl ENSDART00000027102 proenkephalin-like [Source:RefSeq_peptide;Acc:NP_956377]
16.1888 -16.04 0.000112902 523 9 5 16 [+] picture button
zgc:92849 ENSDART00000017180 hypothetical protein LOC436767 [Source:RefSeq_peptide;Acc:NP_001002494]
16.1342 -16.04 0.000116448 623 6 1 8 [+] picture button
zgc:112043 ENSDART00000007373 Acyl-CoA-binding domain-containing protein 5. [Source:Uniprot/SWISSPROT;Acc:Q502L1]
16.2426 -17.05 0.000122352 1630 2 1 2 [+] picture button
zgc:92925 ENSDART00000076815 hypothetical protein LOC447825 [Source:RefSeq_peptide;Acc:NP_001004564]
16.9826 -19.27 0.000123087 499 11 1 17 [+] picture button
ENSDART00000059277 Homolog of Homo sapiens "Zinc finger protein 36, C3H type-like 1 [Source:UniGene;Acc:Hs.85155]"Homolog of Homo sapiens "Zinc finger protein 36, C3H type-like 1 [Source:UniGene;Acc:Hs.85155]" BY ORTHOLOGY TO:SINFRUT00000145670
16.2253 -15.89 0.000124778 700 5 1 6 [+] picture button
XR_029704.1 ENSDART00000049469 similar to janus kinase 3 (LOC561370), mRNA [Source:RefSeq_dna;Acc:XR_029704]
16.7661 -12.36 0.000126464 700 9 3 13 [+] picture button

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Download table: GFF TXT
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