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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Danio rerio and dre-miR-125a

933 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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zgc:66103 ENSDART00000019269 hypothetical protein LOC322814 [Source:RefSeq_peptide;Acc:NP_955915]
16.5628 -21.99 1.50361e-11 700 11 8 15 [+] picture button
zgc:154069 ENSDART00000100727 hypothetical protein LOC777767 [Source:RefSeq_peptide;Acc:NP_001071273]
16.9415 -25.8 1.57947e-09 1056 5 1 6 [+] picture button
si:ch211-146m5.2 ENSDART00000079655 si:ch211-146m5.2 (si:ch211-146m5.2), misc RNA [Source:RefSeq_dna;Acc:XR_029637]
16.9418 -17.08 5.50947e-09 234 7 1 8 [+] picture button
ddost ENSDART00000054290 dolichyl-diphosphooligosaccharide-protein glycosyltransferase [Source:RefSeq_peptide;Acc:NP_998258]
14.8475 -13.72 6.87918e-08 413 10 3 17 [+] picture button
si:dkey-65b13.2 ENSDART00000061843 SMEK homolog 1. [Source:Uniprot/SWISSPROT;Acc:Q5SP90]
15.6261 -19.07 2.76221e-07 1272 4 4 4 [+] picture button
LOC100005462 ENSDART00000057268 cDNA sequence AK220484 [Source:MarkerSymbol;Acc:MGI:3576497]cDNA sequence AK220484 [Source:MarkerSymbol;Acc:MGI:3576497] BY ORTHOLOGY TO:ENSRNOT00000033468
15.0382 -15.68 3.03514e-07 700 9 2 10 [+] picture button
cdx4 ENSDART00000052709 caudal type homeo box transcription factor 4 [Source:RefSeq_peptide;Acc:NP_571184]
14.9018 -26.34 3.70023e-07 504 11 3 14 [+] picture button
par1 ENSDART00000097213 paraxis [Source:RefSeq_peptide;Acc:NP_571047]
18.0788 -23.67 5.51799e-07 274 7 1 9 [+] picture button
NP_001082838.1 ENSDART00000101582 hypothetical protein LOC555238 [Source:RefSeq_peptide;Acc:NP_001082838]
15.0167 -15.47 8.11751e-07 682 6 1 6 [+] picture button
zgc:123204 ENSDART00000063781 hypothetical protein LOC664762 [Source:RefSeq_peptide;Acc:NP_001035080]
15.1768 -17.28 1e-06 700 8 2 5 [+] picture button
RNPEPL1 ENSDART00000024615 Arginyl aminopeptidase-like 1 (EC 3.4.11.-) (RNPEP-like protein). [Source:Uniprot/SWISSPROT;Acc:Q9HAU8]
15.2456 -14.4 1.924e-06 700 7 2 7 [+] picture button
LOC569741 ENSDART00000020569 Cysteine-rich with EGF-like domain protein 1 precursor. [Source:Uniprot/SWISSPROT;Acc:Q96HD1]Cysteine-rich with EGF-like domain protein 1 precursor. [Source:Uniprot/SWISSPROT;Acc:Q96HD1] BY ORTHOLOGY TO:ENSMMUT00000025698
14.6233 -18.41 2.42326e-06 700 4 3 4 [+] picture button
zgc:153737 ENSDART00000100892 hypothetical protein LOC751656 [Source:RefSeq_peptide;Acc:NP_001038838]
14.5723 -16.97 3.06539e-06 700 4 1 4 [+] picture button
si:ch211-89p1.3 ENSDART00000051473 Novel protein (LOC558111). [Source:Uniprot/SPTREMBL;Acc:A2BFD2]
17.471 -24.45 3.71527e-06 306 9 2 11 [+] picture button
LOC799412 ENSDART00000085351 Transient receptor potential cation channel subfamily M member 2 (EC 3.6.1.13) (Long transient receptor potential channel 2) (LTrpC2) (LTrpC-2) (Transient receptor potential channel 7) (TrpC7) (Estrogen- responsive element-associated gene 1 protein). [Source:Uniprot/SWISSPROT;Acc:O94759]Transient receptor potential cation channel subfamily M member 2 (EC 3.6.1.13) (Long transient receptor potential channel 2) (LTrpC2) (LTrpC-2) (Transient receptor potential channel 7) (TrpC7) (Estrogen- responsive element-associated gene 1 protein). [Source:Uniprot/SWISSPROT;Acc:O94759] BY ORTHOLOGY TO:ENSMMUT00000005931
15.1669 -21.53 3.76435e-06 700 3 1 6 [+] picture button
zgc:109927 ENSDART00000053482 hypothetical protein LOC553550 [Source:RefSeq_peptide;Acc:NP_001018365]
15.5567 -22.51 4.07886e-06 700 7 7 5 [+] picture button
mad1l1 ENSDART00000048610 MAD1 mitotic arrest deficient-like 1 [Source:RefSeq_peptide;Acc:NP_957206]
15.9492 -19.99 5.48773e-06 365 7 2 13 [+] picture button
sox7 ENSDART00000081482 SRY (sex determining region Y)-box 7 [Source:RefSeq_peptide;Acc:NP_001074219]
15.4516 -25.29 7.25204e-06 602 9 5 10 [+] picture button
tomm40 ENSDART00000015302 translocase of outer mitochondrial membrane 40 homolog [Source:RefSeq_peptide;Acc:NP_955908]
16.4658 -26.57 9.37675e-06 1007 2 1 2 [+] picture button
zgc:123333 ENSDART00000103551 hypothetical protein LOC560778 [Source:RefSeq_peptide;Acc:NP_001032465]
15.3676 -18.02 1.05188e-05 700 7 1 10 [+] picture button
zgc:56417 ENSDART00000102645 hypothetical protein LOC393258 [Source:RefSeq_peptide;Acc:NP_956582]
14.6221 -19.05 1.08365e-05 931 7 1 8 [+] picture button
npepl1 ENSDART00000024578 aminopeptidase-like 1 [Source:RefSeq_peptide;Acc:NP_001017688]
15.5068 -19.13 1.23744e-05 700 9 3 8 [+] picture button
zgc:113056 ENSDART00000009794 hypothetical protein LOC541541 [Source:RefSeq_peptide;Acc:NP_001014377]
15.0382 -17.3 1.36136e-05 700 8 1 9 [+] picture button
GJA4 ENSDART00000103155 Gap junction alpha-4 protein (Connexin-37) (Cx37). [Source:Uniprot/SWISSPROT;Acc:P35212]
15.7843 -20.3 1.41857e-05 700 6 1 7 [+] picture button
SLC45A4 ENSDART00000085779 solute carrier family 45, member 4 [Source:RefSeq_peptide;Acc:NP_001073900]
16.8635 -31.18 1.42878e-05 700 6 1 4 [+] picture button
SLC45A4 ENSDART00000103200 solute carrier family 45, member 4 [Source:RefSeq_peptide;Acc:NP_001073900]
16.8635 -31.18 1.42878e-05 700 6 1 4 [+] picture button
SLC45A4 ENSDART00000085770 solute carrier family 45, member 4 [Source:RefSeq_peptide;Acc:NP_001073900]
16.8635 -31.18 1.42878e-05 700 8 2 7 [+] picture button
rtcd1 ENSDART00000021666 RNA terminal phosphate cyclase domain 1 [Source:RefSeq_peptide;Acc:NP_955830]
14.6764 -15.92 1.6277e-05 747 7 3 7 [+] picture button
lbr ENSDART00000019145 lamin B receptor [Source:RefSeq_peptide;Acc:NP_001002720]
14.8624 -17.61 1.63838e-05 503 6 2 6 [+] picture button
si:dkey-181f18.3 ENSDART00000008840 si:dkey-181f18.3 [Source:RefSeq_peptide;Acc:NP_001025283]
14.8308 -19.91 1.76782e-05 700 7 2 8 [+] picture button
LOC559133 ENSDART00000066290 Urotensin II receptor (UR-II-R) (G-protein coupled receptor 14). [Source:Uniprot/SWISSPROT;Acc:Q9UKP6]Urotensin II receptor (UR-II-R) (G-protein coupled receptor 14). [Source:Uniprot/SWISSPROT;Acc:Q9UKP6] BY ORTHOLOGY TO:ENSGACT00000007048
15.1419 -19.86 1.8808e-05 700 7 2 7 [+] picture button
zgc:92308 ENSDART00000082454 Uncharacterized protein C1orf85 homolog precursor. [Source:Uniprot/SWISSPROT;Acc:Q66HW4]
16.5994 -18.77 1.88252e-05 382 7 1 9 [+] picture button
si:ch211-14a17.11 ENSDART00000076474 hypothetical protein LOC368892 [Source:RefSeq_peptide;Acc:NP_001007178]
14.6677 -15.54 2.068e-05 159 5 1 8 [+] picture button
A2BGS3_DANRE ENSDART00000073721 Novel protein similar to vertebrate transmembrane protein 116 (TMEM116). [Source:Uniprot/SPTREMBL;Acc:A2BGS3]
15.1419 -16.09 2.65237e-05 700 7 1 8 [+] picture button
USP46 ENSDART00000066678 Ubiquitin carboxyl-terminal hydrolase 46 (EC 3.1.2.15) (Ubiquitin thioesterase 46) (Ubiquitin-specific-processing protease 46) (Deubiquitinating enzyme 46). [Source:Uniprot/SWISSPROT;Acc:P62068]
14.6088 -14.94 2.65376e-05 700 4 1 8 [+] picture button
zgc:77831 ENSDART00000035560 Transmembrane protein 38A. [Source:Uniprot/SWISSPROT;Acc:Q6P2T0]
15.453 -14.02 2.69238e-05 700 3 1 4 [+] picture button
zgc:113841 ENSDART00000060809 hypothetical protein LOC553261 [Source:RefSeq_peptide;Acc:NP_001020094]
15.0088 -22.7 4.17585e-05 149 2 1 3 [+] picture button
zgc:101540 ENSDART00000103597 hypothetical protein LOC494096 [Source:RefSeq_peptide;Acc:NP_001008639]
15.6084 -17.19 4.78028e-05 700 5 1 5 [+] picture button
dffb ENSDART00000005989 DNA fragmentation factor, beta polypeptide (caspase-activated DNase) [Source:RefSeq_peptide;Acc:NP_919385]
14.554 -10.08 5.2437e-05 283 10 3 17 [+] picture button
A2CER7_DANRE ENSDART00000051392 Novel protein similar to human spinster protein (SPIN1). [Source:Uniprot/SPTREMBL;Acc:A2CER7]
14.792 -25.47 5.26933e-05 700 6 4 5 [+] picture button
si:ch211-117l16.1 ENSDART00000041573 Novel protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q5TYW7]
15.0064 -19.82 5.33403e-05 479 10 1 14 [+] picture button
fkbp9 ENSDART00000004392 FK506 binding protein 9 [Source:RefSeq_peptide;Acc:NP_001003520]
14.554 -14.56 5.385e-05 285 9 2 13 [+] picture button
LOC795522 ENSDART00000073865 Retinoblastoma-like protein 1 (107 kDa retinoblastoma-associated protein) (PRB1) (P107). [Source:Uniprot/SWISSPROT;Acc:P28749]Retinoblastoma-like protein 1 (107 kDa retinoblastoma-associated protein) (PRB1) (P107). [Source:Uniprot/SWISSPROT;Acc:P28749] BY ORTHOLOGY TO:ENSGALT00000002032
15.2456 -15.71 5.43188e-05 700 5 1 6 [+] picture button
zgc:123316 ENSDART00000101063 hypothetical protein LOC641475 [Source:RefSeq_peptide;Acc:NP_001032493]
14.5791 -18.36 5.77059e-05 700 9 1 8 [+] picture button
si:dkey-265m8.2 ENSDART00000053410 hypothetical protein LOC100037328 [Source:RefSeq_peptide;Acc:NP_001082952]
14.4403 -11.98 6.03396e-05 200 4 2 6 [+] picture button
hsd3b7 ENSDART00000053684 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase [Source:RefSeq_peptide;Acc:NP_956103]
16.7375 -17.24 6.12027e-05 517 8 1 20 [+] picture button
zgc:158758 ENSDART00000100501 hypothetical protein LOC100009655 [Source:RefSeq_peptide;Acc:NP_001076493]
16.7037 -25.9 6.20543e-05 549 7 2 13 [+] picture button
LOC567726 ENSDART00000048623 Novel protein. [Source:Uniprot/SPTREMBL;Acc:Q5T5A3]Novel protein. [Source:Uniprot/SPTREMBL;Acc:Q5T5A3] BY ORTHOLOGY TO:ENSOANT00000007293
16.1285 -18.36 6.46624e-05 700 5 1 5 [+] picture button
Q502K2_DANRE ENSDART00000105316 LOC553453 protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q502K2]
15.0382 -16.37 6.73037e-05 700 7 2 8 [+] picture button
asb7 ENSDART00000006343 ankyrin repeat and SOCS box-containing 7 [Source:RefSeq_peptide;Acc:NP_999895]
15.8047 -18.32 7.70674e-05 300 6 11 5 [+] picture button

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Download table: GFF TXT
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