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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Danio rerio and dre-miR-1

715 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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nudcd1 ENSDART00000052503 NudC domain containing 1 [Source:RefSeq_peptide;Acc:NP_001018463]
17.8514 -13.79 4.48157e-08 245 8 2 13 [+] picture button
zgc:77449 ENSDART00000100715 hypothetical protein LOC405835 [Source:RefSeq_peptide;Acc:NP_998064]
16.878 -18.15 7.31575e-08 700 6 2 5 [+] picture button
zgc:154043 ENSDART00000053576 hypothetical protein LOC768136 [Source:RefSeq_peptide;Acc:NP_001070750]
16.7776 -18.42 1.46323e-07 415 12 3 21 [+] picture button
zgc:56513 ENSDART00000008593 Protein YIPF5 (YIP1 family member 5). [Source:Uniprot/SWISSPROT;Acc:Q6P5I8]
19.3217 -20.27 5.02903e-07 557 6 2 7 [+] picture button
snx14 ENSDART00000104725 sorting nexin 14 [Source:RefSeq_peptide;Acc:NP_001038258]
16.451 -11.2 6.03964e-07 325 6 2 11 [+] picture button
acat2 ENSDART00000006778 acetyl-CoA acetyltransferase 2 [Source:RefSeq_peptide;Acc:NP_571445]
16.6618 -16.03 1.34754e-06 673 12 1 17 [+] picture button
zgc:136412 ENSDART00000028635 XK-related protein 9 [Source:RefSeq_peptide;Acc:NP_001012259]
16.1459 -13.07 1.50589e-06 129 5 3 8 [+] picture button
zgc:114051 ENSDART00000058162 hypothetical protein LOC558711 [Source:RefSeq_peptide;Acc:NP_001020673]
18.9881 -18.13 3.13484e-06 525 10 3 16 [+] picture button
dmrt2 ENSDART00000010786 doublesex and mab-3 related transcription factor 2 [Source:RefSeq_peptide;Acc:NP_571027]
17.1562 -12.1 3.97763e-06 316 5 2 9 [+] picture button
cwf19l1 ENSDART00000026509 CWF19-like 1, cell cycle control [Source:RefSeq_peptide;Acc:NP_001038223]
17.5103 -13.49 5.97661e-06 249 5 2 11 [+] picture button
pgrmc1 ENSDART00000076328 progesterone receptor membrane component 1 [Source:RefSeq_peptide;Acc:NP_001007393]
16.9599 -11.16 7.01037e-06 603 5 2 7 [+] picture button
cluap1 ENSDART00000056296 Clusterin-associated protein 1 homolog. [Source:Uniprot/SWISSPROT;Acc:Q7ZVC2]
17.2337 -9.15 7.11274e-06 326 6 2 12 [+] picture button
LOC100003699 ENSDART00000090548 asteroid homolog 1 [Source:RefSeq_peptide;Acc:NP_054784]asteroid homolog 1 [Source:RefSeq_peptide;Acc:NP_054784] BY ORTHOLOGY TO:ENSMODT00000015209
16.3308 -15.67 7.31668e-06 700 7 1 8 [+] picture button
arg2 ENSDART00000057377 arginase, type II [Source:RefSeq_peptide;Acc:NP_955905]
17.683 -21.27 1.32366e-05 788 7 1 10 [+] picture button
hsp90a2 ENSDART00000023550 hypothetical protein LOC565155 [Source:RefSeq_peptide;Acc:NP_001038538]
17.8384 -12.44 1.41793e-05 700 2 3 3 [+] picture button
alg8 ENSDART00000065565 asparagine-linked glycosylation 8 homolog (yeast, alpha-1,3-glucosyltransferase) [Source:RefSeq_peptide;Acc:NP_001017647]
16.8281 -13.64 1.43197e-05 209 6 2 8 [+] picture button
zgc:112247 ENSDART00000063120 hypothetical protein LOC553981 [Source:RefSeq_peptide;Acc:NP_001018307]
16.9423 -19.71 1.95349e-05 656 6 1 6 [+] picture button
prkcsh ENSDART00000023814 protein kinase C substrate 80K-H [Source:RefSeq_peptide;Acc:NP_957347]
19.1021 -15.41 2.43538e-05 224 9 3 26 [+] picture button
zgc:158409 ENSDART00000089992 hypothetical protein LOC567263 [Source:RefSeq_peptide;Acc:NP_001073502]
17.9575 -19.24 2.77706e-05 828 5 1 6 [+] picture button
zgc:136871 ENSDART00000093228 hypothetical protein LOC678634 [Source:RefSeq_peptide;Acc:NP_001035469]
16.9712 -14.21 3.69592e-05 382 8 1 14 [+] picture button
ak2 ENSDART00000003167 adenylate kinase 2 [Source:RefSeq_peptide;Acc:NP_997761]
17.9128 -15.84 4.70584e-05 653 5 3 12 [+] picture button
ENSDART00000090514 NOT ANNOTATED
17.8294 -16.75 5.01257e-05 700 5 1 6 [+] picture button
zgc:91905 ENSDART00000101509 hypothetical protein LOC445065 [Source:RefSeq_peptide;Acc:NP_001003459]
16.2781 -14.47 5.60251e-05 700 10 2 11 [+] picture button
bsk146 ENSDART00000019271 Serine/threonine-protein kinase SBK1 (EC 2.7.11.1) (SH3-binding kinase 1) (Brain-specific protein kinase BSK146). [Source:Uniprot/SWISSPROT;Acc:Q90ZY4]
17.0087 -15.17 5.66547e-05 700 10 1 9 [+] picture button
zgc:101602 ENSDART00000034246 hypothetical protein LOC492768 [Source:RefSeq_peptide;Acc:NP_001007410]
16.8281 -9.69 6.06124e-05 150 3 1 3 [+] picture button
fgf5 ENSDART00000051256 fibroblast growth factor 5 [Source:RefSeq_peptide;Acc:NP_001009561]
16.5783 -17.65 6.73934e-05 700 2 2 3 [+] picture button
erh ENSDART00000047146 Enhancer of rudimentary homolog. [Source:Uniprot/SWISSPROT;Acc:Q98874]
16.4241 -10.69 7.11794e-05 505 5 1 6 [+] picture button
A3QK38_DANRE ENSDART00000083665 Novel protein similar to human WD repeat domain 66 (WDR66). [Source:Uniprot/SPTREMBL;Acc:A3QK38]
18.1495 -14.33 7.42994e-05 700 7 1 8 [+] picture button
zgc:114069 ENSDART00000049618 hypothetical protein LOC573998 [Source:RefSeq_peptide;Acc:NP_001020348]
16.6956 -9.58 7.73493e-05 394 8 5 10 [+] picture button
LOC792815 ENSDART00000059261 Dual specificity protein phosphatase 19 (EC 3.1.3.48) (EC 3.1.3.16) (Stress-activated protein kinase pathway-regulating phosphatase 1) (Protein phosphatase SKRP1) (Dual-specificity phosphatase TS-DSP1) (LMW-DSP3). [Source:Uniprot/SWISSPROT;Acc:Q8WTR2]Dual specificity protein phosphatase 19 (EC 3.1.3.48) (EC 3.1.3.16) (Stress-activated protein kinase pathway-regulating phosphatase 1) (Protein phosphatase SKRP1) (Dual-specificity phosphatase TS-DSP1) (LMW-DSP3). [Source:Uniprot/SWISSPROT;Acc:Q8WTR2] BY ORTHOLOGY TO:ENSOANT00000022464
16.3201 -16.1 8.09444e-05 700 3 1 4 [+] picture button
Q1LYL7_DANRE ENSDART00000084528 Novel protein similar to vertebrate ATPase, Ca++ transporting, type 2C, member 1 (ATP2C1) (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q1LYL7]
17.2367 -19.46 8.70425e-05 700 7 1 10 [+] picture button
zcrb1 ENSDART00000067174 Zinc finger CCHC-type and RNA-binding motif-containing protein 1. [Source:Uniprot/SWISSPROT;Acc:Q5SP50]
18.0536 -17.08 8.84131e-05 321 5 4 7 [+] picture button
zgc:103448 ENSDART00000079070 hypothetical protein LOC492481 [Source:RefSeq_peptide;Acc:NP_001007354]
16.6644 -14.83 9.11411e-05 700 7 2 9 [+] picture button
zgc:153678 ENSDART00000093277 Protein phosphatase 1H (EC 3.1.3.16). [Source:Uniprot/SWISSPROT;Acc:Q05AL2]
16.9702 -13.21 9.27588e-05 436 9 2 14 [+] picture button
zgc:92283 ENSDART00000048921 hypothetical protein LOC436881 [Source:RefSeq_peptide;Acc:NP_001002608]
18.1038 -13.64 9.62045e-05 331 11 1 17 [+] picture button
ube1dc1 ENSDART00000093046 T03F1.1 [Source:RefSeq_peptide;Acc:NP_491248]T03F1.1 [Source:RefSeq_peptide;Acc:NP_491248] BY ORTHOLOGY TO:T03F1.1.1
18.6968 -15.26 0.000101556 413 8 1 12 [+] picture button
paics ENSDART00000048164 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase [Source:RefSeq_peptide;Acc:NP_955831]
17.2829 -13.63 0.000107905 153 4 2 7 [+] picture button
NP_001076338.1 ENSDART00000054989 hypothetical protein LOC570314 [Source:RefSeq_peptide;Acc:NP_001076338]
16.905 -17.99 0.00011709 700 2 1 2 [+] picture button
coil ENSDART00000058603 coilin p80 [Source:RefSeq_peptide;Acc:NP_571587]
16.3781 -9.88 0.000117603 405 10 2 12 [+] picture button
LOC566820 ENSDART00000089233 RING finger protein 38. [Source:Uniprot/SWISSPROT;Acc:Q9H0F5]RING finger protein 38. [Source:Uniprot/SWISSPROT;Acc:Q9H0F5] BY ORTHOLOGY TO:ENSMMUT00000023330
16.3831 -11.91 0.000121234 700 2 1 3 [+] picture button
pex10 ENSDART00000060853 peroxisome biogenesis factor 10 [Source:RefSeq_peptide;Acc:NP_001005994]
18.0788 -14.06 0.000133916 228 8 2 14 [+] picture button
zgc:110083 ENSDART00000012994 hypothetical protein LOC550242 [Source:RefSeq_peptide;Acc:NP_001017580]
16.1459 -10.71 0.000134455 111 4 1 6 [+] picture button
sod1 ENSDART00000064376 Superoxide dismutase [Cu-Zn] (EC 1.15.1.1). [Source:Uniprot/SWISSPROT;Acc:O73872]
16.6007 -12.73 0.000135261 215 6 3 15 [+] picture button
anxa4 ENSDART00000052961 annexin A4 [Source:RefSeq_peptide;Acc:NP_861429]
16.6007 -14.06 0.000143027 215 7 3 13 [+] picture button
idh1 ENSDART00000101338 isocitrate dehydrogenase 1 (NADP+), soluble [Source:RefSeq_peptide;Acc:NP_958907]
16.6976 -13.01 0.0001431 700 9 2 10 [+] picture button
zgc:114103 ENSDART00000105201 Integral membrane protein GPR175. [Source:Uniprot/SWISSPROT;Acc:Q4V8X0]
16.5939 -15.82 0.000151177 700 5 1 5 [+] picture button
bsk146 ENSDART00000077129 brain specific kinase 146 (bsk146), mRNA [Source:RefSeq_dna;Acc:NM_212841]
16.8443 -14.17 0.000153858 919 8 1 4 [+] picture button
LOC568208 ENSDART00000081247 Tetratricopeptide repeat protein 6 (TPR repeat protein 6). [Source:Uniprot/SWISSPROT;Acc:Q86TZ1]Tetratricopeptide repeat protein 6 (TPR repeat protein 6). [Source:Uniprot/SWISSPROT;Acc:Q86TZ1] BY ORTHOLOGY TO:ENSMMUT00000015842
16.3022 -17.11 0.000154097 700 4 1 5 [+] picture button
sparcl ENSDART00000053156 SPARCL1 (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q6PVV6]
16.7468 -17.45 0.000155422 700 10 2 10 [+] picture button
LOC565462 ENSDART00000081802 Serine/threonine-protein kinase Nek3 (EC 2.7.11.1) (NimA-related protein kinase 3) (HSPK 36). [Source:Uniprot/SWISSPROT;Acc:P51956]Serine/threonine-protein kinase Nek3 (EC 2.7.11.1) (NimA-related protein kinase 3) (HSPK 36). [Source:Uniprot/SWISSPROT;Acc:P51956] BY ORTHOLOGY TO:ENSPTRT00000010834
16.8215 -15 0.000159355 700 8 1 11 [+] picture button

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Download table: GFF TXT
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