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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Danio rerio and dre-let-7b

919 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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zgc:112182 ENSDART00000023388 Ubiquitin thioesterase OTU1 (EC 3.1.2.-). [Source:Uniprot/SWISSPROT;Acc:Q567B1]
19.2158 -24.31 9.20453e-14 266 6 3 8 [+] picture button
XR_029429.1 ENSDART00000074378 similar to LOC373796 protein (LOC797900), mRNA [Source:RefSeq_dna;Acc:XR_029429]
17.8634 -23.25 1.67919e-13 700 6 1 7 [+] picture button
A2BHG4_DANRE ENSDART00000076845 Novel protein similar to vertebrate Fraser syndrome 1 homolog (Human) (FRAS1) (Fragment). [Source:Uniprot/SPTREMBL;Acc:A2BHG4]
17.9421 -24.2 1.69327e-07 700 8 7 12 [+] picture button
si:ch211-160d20.3 ENSDART00000004129 hypothetical protein LOC692267 [Source:RefSeq_peptide;Acc:NP_001038706]
16.0918 -19.83 2.00175e-07 508 4 1 4 [+] picture button
A2BIH4_DANRE ENSDART00000099848 Novel protein similar to vertebrate zinc finger protein 644 (ZNF644). [Source:Uniprot/SPTREMBL;Acc:A2BIH4]
17.3384 -27.39 2.7015e-07 700 5 2 8 [+] picture button
gatm ENSDART00000052641 L-arginine:glycine amidinotransferase [Source:RefSeq_peptide;Acc:NP_955825]
16.0747 -22.21 3.33573e-07 700 7 1 8 [+] picture button
LOC567864 ENSDART00000075967 zinc finger, FYVE domain containing 26 [Source:RefSeq_peptide;Acc:NP_056161]zinc finger, FYVE domain containing 26 [Source:RefSeq_peptide;Acc:NP_056161] BY ORTHOLOGY TO:ENSMODT00000012851
16.3022 -20.56 3.52332e-07 700 8 2 8 [+] picture button
prim1 ENSDART00000104647 primase polypeptide 1 [Source:RefSeq_peptide;Acc:NP_958856]
15.9185 -19.13 5.60614e-07 255 7 4 9 [+] picture button
atp2a2a ENSDART00000086447 ATPase, Ca++ transporting, cardiac muscle, slow twitch 2 [Source:RefSeq_peptide;Acc:NP_957259]
16.6912 -15.17 7.01176e-07 700 3 9 5 [+] picture button
LOC796380 ENSDART00000083129 translation initiation factor 3, subunit S9, putativetranslation initiation factor 3, subunit S9, putative BY ORTHOLOGY TO:AAEL007718-RA
15.7997 -23.7 7.73218e-07 700 7 1 10 [+] picture button
WDR7 ENSDART00000082419 WD repeat protein 7 (TGF-beta resistance-associated protein TRAG) (Rabconnectin-3 beta). [Source:Uniprot/SWISSPROT;Acc:Q9Y4E6]
17.8514 -23.14 1e-06 700 8 1 5 [+] picture button
ENSDART00000073410 NOT ANNOTATED
16.0753 -22.73 1e-06 700 6 1 4 [+] picture button
mhc1ze ENSDART00000040516 MHC class I antigen (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q8MHA9]
16.4901 -19.28 1e-06 700 6 1 5 [+] picture button
ENSDART00000035573 NOT ANNOTATED
16.905 -20.35 1e-06 700 11 1 5 [+] picture button
mhc1ze ENSDART00000105021 MHC class I antigen (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q8MHB2]
16.4901 -19.28 1e-06 700 8 1 8 [+] picture button
LOC563412 ENSDART00000021403 Eukaryotic translation initiation factor 2C 4 (eIF2C 4) (eIF-2C 4) (Argonaute-4). [Source:Uniprot/SWISSPROT;Acc:Q9HCK5]Eukaryotic translation initiation factor 2C 4 (eIF2C 4) (eIF-2C 4) (Argonaute-4). [Source:Uniprot/SWISSPROT;Acc:Q9HCK5] BY ORTHOLOGY TO:ENSORLT00000012382
16.1459 -17.34 1.22838e-06 700 11 3 15 [+] picture button
zgc:158400 ENSDART00000079575 hypothetical protein LOC780844 [Source:RefSeq_peptide;Acc:NP_001073133]
16.0322 -14.09 1.48093e-06 286 10 3 19 [+] picture button
NP_001073985.1 ENSDART00000075765 similar to glutaredoxin cysteine-rich 1 protein [Source:RefSeq_peptide;Acc:NP_001073985]
17.6734 -23.88 1.80212e-06 700 14 2 16 [+] picture button
prkcq ENSDART00000046253 si:ch211-239o15.1 [Source:RefSeq_peptide;Acc:NP_001082839]
16.7948 -22.11 1.80558e-06 700 6 1 8 [+] picture button
acadvl ENSDART00000023089 acyl-Coenzyme A dehydrogenase, very long chain [Source:RefSeq_peptide;Acc:NP_997776]
17.1692 -19.98 1.95969e-06 239 4 1 12 [+] picture button
C4orf8 ENSDART00000053162 Uncharacterized protein C4orf8 (Protein IT14). [Source:Uniprot/SWISSPROT;Acc:P78312]
16.2528 -19.7 2.34134e-06 700 5 2 6 [+] picture button
zgc:63673 ENSDART00000058147 hypothetical protein LOC393452 [Source:RefSeq_peptide;Acc:NP_956774]
17.5103 -15.51 2.53117e-06 216 4 5 7 [+] picture button
riok3 ENSDART00000098827 RIO kinase 3 [Source:RefSeq_peptide;Acc:NP_001003614]
16.6768 -20.81 2.7829e-06 700 6 1 13 [+] picture button
LOC566565 ENSDART00000024604 methionine-tRNA synthetasemethionine-tRNA synthetase BY ORTHOLOGY TO:AAEL003913-RA
15.7739 -19.65 3.97864e-06 700 5 1 8 [+] picture button
gpr137bb ENSDART00000054183 G protein-coupled receptor 137bb [Source:RefSeq_peptide;Acc:NP_001002691]
17.1128 -19.09 4.87626e-06 393 11 4 16 [+] picture button
foxh1 ENSDART00000078021 Forkhead box protein H1 (Forkhead activin signal transducer 1) (Fast- 1) (Schmalspur protein). [Source:Uniprot/SWISSPROT;Acc:Q9I9E1]
16.5285 -25.22 5.45783e-06 1503 2 3 3 [+] picture button
zgc:152900 ENSDART00000074495 hypothetical protein LOC768170 [Source:RefSeq_peptide;Acc:NP_001070781]
15.782 -24 7.51785e-06 618 3 1 4 [+] picture button
zgc:103539 ENSDART00000017968 hypothetical protein LOC449815 [Source:RefSeq_peptide;Acc:NP_001005988]
17.8853 -19.09 9.0791e-06 497 7 2 8 [+] picture button
ets1b ENSDART00000045403 v-ets erythroblastosis virus E26 oncogene homolog 1b [Source:RefSeq_peptide;Acc:NP_001032452]
17.39 -16.74 9.89128e-06 301 10 2 16 [+] picture button
mt-atp6 ENSDART00000093612 ATP synthase a chain (EC 3.6.3.14) (ATPase protein 6). [Source:Uniprot/SWISSPROT;Acc:Q9MIY5]
16.8806 -19.61 1.08263e-05 700 7 5 8 [+] picture button
NP_001073649.1 ENSDART00000077389 zinc finger protein 148 [Source:RefSeq_peptide;Acc:NP_001073649]
17.1498 -21.65 1.14874e-05 610 12 11 20 [+] picture button
si:ch211-222e23.8 ENSDART00000089540 Novel protein similar to vertebrate SAC1 suppressor of actin mutations 1-like (Yeast) (SACM1L). [Source:Uniprot/SPTREMBL;Acc:Q1L8A6]
15.8679 -22.7 1.18362e-05 700 8 3 10 [+] picture button
zgc:112443 ENSDART00000078523 hypothetical protein LOC550392 [Source:RefSeq_peptide;Acc:NP_001017697]
16.6559 -14.98 1.2184e-05 700 2 1 4 [+] picture button
vps29 ENSDART00000101246 vacuolar protein sorting 29 [Source:RefSeq_peptide;Acc:NP_956331]
15.7518 -16.21 1.34699e-05 309 6 1 12 [+] picture button
rbpms2 ENSDART00000024062 Cytoplasmic polyadenylation element-binding protein 1 (CPE-binding protein 1) (CPE-BP1) (CPEB-1) (Protein Zorba) (Zebrafish orb-type a) (ZOR-1) (Orb/CPEB-related RNA-binding protein). [Source:Uniprot/SWISSPROT;Acc:Q9YGX5]
16.0374 -16.52 1.53383e-05 1068 6 9 7 [+] picture button
LOC793783 ENSDART00000103236 ankyrin repeat domain 37 [Source:MarkerSymbol;Acc:MGI:3603344]ankyrin repeat domain 37 [Source:MarkerSymbol;Acc:MGI:3603344] BY ORTHOLOGY TO:ENSMUST00000053558
16.3071 -23.9 1.5614e-05 700 3 1 3 [+] picture button
zgc:55573 ENSDART00000015932 hypothetical protein LOC406764 [Source:RefSeq_peptide;Acc:NP_998620]
16.0516 -19.69 1.63236e-05 528 6 1 12 [+] picture button
si:ch211-117l16.3 ENSDART00000028941 mitochondrial ribosomal protein S18A like [Source:RefSeq_peptide;Acc:NP_001025285]
17.3966 -12.92 1.68228e-05 246 7 5 11 [+] picture button
hoxd3a ENSDART00000082357 Homeobox d3a (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q4PR79]
16.022 -19.93 1.90709e-05 700 10 4 11 [+] picture button
fbxl14a ENSDART00000050029 F-box and leucine-rich repeat protein 14a [Source:RefSeq_peptide;Acc:NP_958890]
16.3596 -20.34 2.04223e-05 700 7 1 7 [+] picture button
skap2 ENSDART00000052660 Src kinase-associated phosphoprotein 2 (Src family-associated phosphoprotein 2). [Source:Uniprot/SWISSPROT;Acc:Q6PG29]
17.8179 -23.5 2.70683e-05 305 12 2 22 [+] picture button
si:ch73-264b7.2 ENSDART00000105675 TPR repeat-containing protein C18orf17 homolog. [Source:Uniprot/SWISSPROT;Acc:Q1LXE6]
15.7642 -20.77 2.81638e-05 700 5 7 9 [+] picture button
zgc:66100 ENSDART00000013814 hypothetical protein LOC393553 [Source:RefSeq_peptide;Acc:NP_956875]
16.0021 -19.34 2.9894e-05 347 6 3 9 [+] picture button
coe2 ENSDART00000014822 Transcription factor COE2. [Source:Uniprot/SWISSPROT;Acc:O93375]
15.7595 -16.43 3.01059e-05 756 5 1 7 [+] picture button
LOC559531 ENSDART00000076156 Max-interacting transcriptional repressor MAD4 (Max-associated protein 4) (MAX dimerization protein 4). [Source:Uniprot/SWISSPROT;Acc:Q14582]Max-interacting transcriptional repressor MAD4 (Max-associated protein 4) (MAX dimerization protein 4). [Source:Uniprot/SWISSPROT;Acc:Q14582] BY ORTHOLOGY TO:SINFRUT00000153473
15.783 -15.75 3.08579e-05 700 6 2 8 [+] picture button
zgc:66295 ENSDART00000005899 hypothetical protein LOC393489 [Source:RefSeq_peptide;Acc:NP_956811]
16.0322 -21.71 3.0881e-05 277 8 2 19 [+] picture button
LOC564926 ENSDART00000081152 centrosomal protein 76 [Source:MarkerSymbol;Acc:MGI:1923401]centrosomal protein 76 [Source:MarkerSymbol;Acc:MGI:1923401] BY ORTHOLOGY TO:ENSMUST00000097542
15.9215 -16.03 3.23473e-05 700 6 1 13 [+] picture button
zgc:153186 ENSDART00000066774 hypothetical protein LOC751758 [Source:RefSeq_peptide;Acc:NP_001038932]
16.3733 -28.36 3.47329e-05 70 2 1 5 [+] picture button
XR_029515.1 ENSDART00000012484 hypothetical protein LOC798974 (LOC798974), mRNA [Source:RefSeq_dna;Acc:XR_029515]
17.2829 -17.03 3.56879e-05 700 8 1 11 [+] picture button
NP_001077298.1 ENSDART00000085304 hypothetical protein LOC559556 [Source:RefSeq_peptide;Acc:NP_001077298]
15.8053 -18.42 3.75767e-05 700 8 2 10 [+] picture button

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Download table: GFF TXT
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