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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Rattus norvegicus and rno-miR-99a*

784 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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Vtn ENSRNOT00000039954 vitronectin [Source:RefSeq_peptide;Acc:NP_062029]
16.4901 -19.92 3.311e-05 700 17 2 24 [+] picture button
Wnt5b ENSRNOT00000011044 WNT5B-like protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q8CFB3]
17.4497 -20.8 3.82487e-05 389 17 6 38 [+] picture button
Lhx1 ENSRNOT00000003799 LIM/homeobox protein Lhx1 (LIM homeobox protein 1) (Homeobox protein Lim-1) (Rlim). [Source:Uniprot/SWISSPROT;Acc:P63007]
19.4433 -19.63 9.14163e-05 83 4 3 7 [+] picture button
Prim1 ENSRNOT00000045511 DNA primase, p49 subunit [Source:RefSeq_peptide;Acc:NP_001008768]
16.8076 -24.48 0.000110027 700 17 2 22 [+] picture button
ENSRNOT00000055116 NOT ANNOTATED
16.4159 -23.31 0.000117807 700 15 1 17 [+] picture button
Pik3c2b_predicted ENSRNOT00000042125 Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing beta polypeptide (EC 2.7.1.154) (Phosphoinositide 3-Kinase-C2-beta) (PtdIns-3-kinase C2 beta) (PI3K-C2beta) (C2-PI3K). [Source:Uniprot/SWISSPROT;Acc:O00750]Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing beta polypeptide (EC 2.7.1.154) (Phosphoinositide 3-Kinase-C2-beta) (PtdIns-3-kinase C2 beta) (PI3K-C2beta) (C2-PI3K). [Source:Uniprot/SWISSPROT;Acc:O00750] BY ORTHOLOGY TO:ENST00000367187
16.469 -25.88 0.000217816 342 18 4 65 [+] picture button
LOC682492 ENSRNOT00000019756 Elongation of very long chain fatty acids protein 2. [Source:Uniprot/SWISSPROT;Acc:Q9NXB9]Elongation of very long chain fatty acids protein 2. [Source:Uniprot/SWISSPROT;Acc:Q9NXB9] BY ORTHOLOGY TO:ENSMMUT00000019521
16.3022 -18.65 0.000268516 700 16 4 23 [+] picture button
Ninj2 ENSRNOT00000013721 Ninjurin-2 (Nerve injury-induced protein 2). [Source:Uniprot/SWISSPROT;Acc:Q9JHE8]
16.7832 -16.82 0.000406149 326 15 3 61 [+] picture button
Lamb3 ENSRNOT00000008440 Laminin chain (Fragment). [Source:Uniprot/SPTREMBL;Acc:P70637]
16.7301 -20.68 0.000436521 700 19 4 29 [+] picture button
Ppp1cc ENSRNOT00000048851 Serine/threonine-protein phosphatase PP1-gamma catalytic subunit (EC 3.1.3.16) (PP-1G) (Protein phosphatase 1C catalytic subunit). [Source:Uniprot/SWISSPROT;Acc:P63088]
20.2392 -27.32 0.000447667 218 9 7 20 [+] picture button
Rab39_predicted ENSRNOT00000011913 Ras-related protein Rab-39A (Rab-39). [Source:Uniprot/SWISSPROT;Acc:Q14964]Ras-related protein Rab-39A (Rab-39). [Source:Uniprot/SWISSPROT;Acc:Q14964] BY ORTHOLOGY TO:ENST00000320578
16.6976 -23.34 0.000472514 700 7 3 13 [+] picture button
Retn ENSRNOT00000001325 resistin [Source:RefSeq_peptide;Acc:NP_653342]
17.2829 -24.9 0.000495323 177 11 3 28 [+] picture button
Kbtbd10 ENSRNOT00000009969 Kelch repeat and BTB domain-containing protein 10 (Kelch-related protein 1) (Kel-like protein 23) (Sarcosin). [Source:Uniprot/SWISSPROT;Acc:Q9ER30]
19.9053 -28.17 0.000630024 470 16 4 31 [+] picture button
Eif2ak4_predicted ENSRNOT00000009222 Eukaryotic translation initiation factor 2-alpha kinase 4 (EC 2.7.11.1) (GCN2-like protein). [Source:Uniprot/SWISSPROT;Acc:Q9P2K8]Eukaryotic translation initiation factor 2-alpha kinase 4 (EC 2.7.11.1) (GCN2-like protein). [Source:Uniprot/SWISSPROT;Acc:Q9P2K8] BY ORTHOLOGY TO:ENSGALT00000015663
17.2829 -13.89 0.000636436 181 9 6 36 [+] picture button
2410025L10Rik ENSRNOT00000050252 RIKEN cDNA 2410025L10 gene [Source:MarkerSymbol;Acc:MGI:1920907]
15.4194 -22.77 0.000652751 700 19 4 32 [+] picture button
RGD1562317_predicted ENSRNOT00000031267 CDNA FLJ45241 fis, clone BRCOC2006164. [Source:Uniprot/SPTREMBL;Acc:Q6ZSS7]CDNA FLJ45241 fis, clone BRCOC2006164. [Source:Uniprot/SPTREMBL;Acc:Q6ZSS7] BY ORTHOLOGY TO:ENSGALT00000003581
15.6326 -14.02 0.000661607 700 15 2 18 [+] picture button
Itgam ENSRNOT00000026748 integrin alpha M [Source:RefSeq_peptide;Acc:NP_036843]
15.5727 -18.97 0.000757298 700 20 1 35 [+] picture button
Igsf9 ENSRNOT00000010930 immunoglobulin superfamily, member 9 [Source:MarkerSymbol;Acc:MGI:2135283]
15.691 -21.2 0.000797284 197 13 5 44 [+] picture button
MITF_RAT ENSRNOT00000011531 Microphthalmia-associated transcription factor (Fragment). [Source:Uniprot/SWISSPROT;Acc:O88368]
15.2825 -14.26 0.000880198 700 22 6 32 [+] picture button
Sap30 ENSRNOT00000017652 sin3 associated polypeptide [Source:MarkerSymbol;Acc:MGI:1929129]
16.9672 -19.5 0.000887668 700 16 9 26 [+] picture button
Cdc42bpg_predicted ENSRNOT00000038016 CDC42 binding protein kinase gamma (DMPK-like) [Source:MarkerSymbol;Acc:MGI:2652845]CDC42 binding protein kinase gamma (DMPK-like) [Source:MarkerSymbol;Acc:MGI:2652845] BY ORTHOLOGY TO:ENSMUST00000025681
16.4068 -17.7 0.000929173 376 17 4 39 [+] picture button
RGD1306433_predicted ENSRNOT00000043408 CG11342-PA [Source:RefSeq_peptide;Acc:NP_647896]CG11342-PA [Source:RefSeq_peptide;Acc:NP_647896] BY ORTHOLOGY TO:CG11342-RA
16.3047 -20.13 0.00105691 359 20 4 47 [+] picture button
Espn ENSRNOT00000016460 espin [Source:RefSeq_peptide;Acc:NP_062568]
16.9125 -27.42 0.00109203 700 14 1 17 [+] picture button
Trmu_predicted ENSRNOT00000022511 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) (Mitochondrial tRNA-specific 2-thiouridylase 1) (MTO2 homolog). [Source:Uniprot/SWISSPROT;Acc:O75648]tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) (Mitochondrial tRNA-specific 2-thiouridylase 1) (MTO2 homolog). [Source:Uniprot/SWISSPROT;Acc:O75648] BY ORTHOLOGY TO:SINFRUT00000162858
15.9185 -17.12 0.00111031 243 14 3 60 [+] picture button
RGD1305647_predicted ENSRNOT00000030065 Transmembrane protein 62. [Source:Uniprot/SWISSPROT;Acc:Q0P6H9]Transmembrane protein 62. [Source:Uniprot/SWISSPROT;Acc:Q0P6H9] BY ORTHOLOGY TO:ENSMODT00000022647
16.1459 -16.74 0.00116693 115 6 4 14 [+] picture button
Ccdc15 ENSRNOT00000050816 coiled-coil domain containing 15 [Source:MarkerSymbol;Acc:MGI:2444488]
16.2325 -17.61 0.00117915 700 13 1 13 [+] picture button
Rab4a ENSRNOT00000049337 Ras-related protein Rab-4A. [Source:Uniprot/SWISSPROT;Acc:P05714]
15.6108 -13.77 0.00120211 635 19 4 25 [+] picture button
Q5BJU4_RAT ENSRNOT00000028119 Osbpl5 protein. [Source:Uniprot/SPTREMBL;Acc:Q5BJU4]
16.2827 -25.82 0.00126873 700 18 5 26 [+] picture button
LOC690611 ENSRNOT00000018691 Phospholipid hydroperoxide glutathione peroxidase, mitochondrial precursor (EC 1.11.1.12) (PHGPx) (GPX-4). [Source:Uniprot/SWISSPROT;Acc:P36970]
15.6424 -20.45 0.00131348 700 14 1 20 [+] picture button
Dnajb11 ENSRNOT00000002462 DnaJ (Hsp40) homolog, subfamily B, member 11 [Source:RefSeq_peptide;Acc:NP_001015021]
16.5785 -21.49 0.00133431 626 21 6 34 [+] picture button
Chrdl2_predicted ENSRNOT00000055306 Chordin-like protein 2 precursor (Chordin-related protein 2) (Breast tumor novel factor 1) (BNF-1). [Source:Uniprot/SWISSPROT;Acc:Q6WN34]Chordin-like protein 2 precursor (Chordin-related protein 2) (Breast tumor novel factor 1) (BNF-1). [Source:Uniprot/SWISSPROT;Acc:Q6WN34] BY ORTHOLOGY TO:ENST00000263671
15.2456 -18.05 0.00137007 700 18 2 23 [+] picture button
Zfp647_predicted ENSRNOT00000006023 Zinc finger protein 250 (Zinc finger protein 647). [Source:Uniprot/SWISSPROT;Acc:P15622]Zinc finger protein 250 (Zinc finger protein 647). [Source:Uniprot/SWISSPROT;Acc:P15622] BY ORTHOLOGY TO:ENST00000292579
15.526 -16.95 0.00141946 700 14 4 18 [+] picture button
RGD1305547_predicted ENSRNOT00000004876 CG8211-PA [Source:RefSeq_peptide;Acc:NP_573232]CG8211-PA [Source:RefSeq_peptide;Acc:NP_573232] BY ORTHOLOGY TO:CG8211-RA
15.8214 -15.62 0.0014914 525 15 2 25 [+] picture button
Gm904 ENSRNOT00000060667 gene model 904, (NCBI) [Source:MarkerSymbol;Acc:MGI:2685750]
16.905 -18.42 0.00149439 700 12 2 16 [+] picture button
RGD1310128_predicted ENSRNOT00000023161 mediator of RNA polymerase II transcription, subunit 10 homolog (NUT2, S. cerevisiae) [Source:RefSeq_peptide;Acc:NP_115662]mediator of RNA polymerase II transcription, subunit 10 homolog (NUT2, S. cerevisiae) [Source:RefSeq_peptide;Acc:NP_115662] BY ORTHOLOGY TO:ENSGALT00000021339
15.89 -21.76 0.00154105 392 22 6 52 [+] picture button
Vim ENSRNOT00000024430 Vimentin. [Source:Uniprot/SWISSPROT;Acc:P31000]
18.0788 -26.82 0.0016031 309 14 8 50 [+] picture button
Myo7a ENSRNOT00000019053 myosin VIIA [Source:RefSeq_peptide;Acc:NP_703203]
15.5567 -25.71 0.00163659 700 18 2 22 [+] picture button
LOC299084 ENSRNOT00000037384 NOT ANNOTATED
15.4973 -15.02 0.00173363 700 13 1 16 [+] picture button
Ascc1 ENSRNOT00000000701 activating signal cointegrator 1 complex subunit 1 [Source:RefSeq_peptide;Acc:NP_001007633]
17.2829 -12.24 0.00173716 346 15 3 46 [+] picture button
Gnn ENSRNOT00000059545 Gnn protein. [Source:Uniprot/SPTREMBL;Acc:Q6P3V7]
18.8755 -28.27 0.00180685 700 13 1 21 [+] picture button
RGD1305327 ENSRNOT00000013764 Nucleolar protein 12 (25 kDa nucleolar protein). [Source:Uniprot/SWISSPROT;Acc:Q5D1Z3]
18.8747 -25.88 0.00180828 255 14 3 46 [+] picture button
Klf1_predicted ENSRNOT00000004601 Krueppel-like factor 1 (Erythroid krueppel-like transcription factor) (EKLF) (Erythroid transcription factor). [Source:Uniprot/SWISSPROT;Acc:Q13351]Krueppel-like factor 1 (Erythroid krueppel-like transcription factor) (EKLF) (Erythroid transcription factor). [Source:Uniprot/SWISSPROT;Acc:Q13351] BY ORTHOLOGY TO:ENSPTRT00000019451
18.8594 -25.89 0.00183692 700 17 5 25 [+] picture button
Zswim6 ENSRNOT00000019476 zinc finger, SWIM domain containing 6 [Source:RefSeq_peptide;Acc:NP_001041349]
16.7672 -22.73 0.00185878 443 19 1 28 [+] picture button
Slc12a5 ENSRNOT00000024657 Solute carrier family 12 member 5 (Electroneutral potassium-chloride cotransporter 2) (K-Cl cotransporter 2) (Neuronal K-Cl cotransporter) (Furosemide-sensitive K-Cl cotransporter) (rKCC2). [Source:Uniprot/SWISSPROT;Acc:Q63633]
17.0087 -20.92 0.00188589 700 21 4 26 [+] picture button
Thra_v2 ENSRNOT00000045939 Thyroid hormone receptor alpha (C-erbA-alpha) (c-erbA-1). [Source:Uniprot/SWISSPROT;Acc:P63059]
16.5939 -22.6 0.00188589 700 13 1 14 [+] picture button
RGD1308828 ENSRNOT00000059763 similar to SRD5A2L (RGD1308828), mRNA [Source:RefSeq_dna;Acc:NM_001013990]
15.3442 -21.62 0.0020217 498 16 1 33 [+] picture button
Dut ENSRNOT00000009549 Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23) (dUTPase) (dUTP pyrophosphatase) (PPAR-interacting protein 4) (PIP4). [Source:Uniprot/SWISSPROT;Acc:P70583]
18.761 -15.49 0.00203128 303 12 1 34 [+] picture button
Cd4 ENSRNOT00000021915 T-cell surface glycoprotein CD4 precursor (T-cell surface antigen T4/Leu-3) (W3/25 antigen). [Source:Uniprot/SWISSPROT;Acc:P05540]
17.2577 -23.42 0.00212815 322 20 4 53 [+] picture button
Creb3l3 ENSRNOT00000044484 cAMP responsive element-binding protein 3-like protein 3 (Transcription factor CREB-H). [Source:Uniprot/SWISSPROT;Acc:Q5FVM5]
16.9096 -21.88 0.00215681 435 18 2 29 [+] picture button
Pik3c2b_predicted ENSRNOT00000060833 NOT ANNOTATED
15.3081 -25.88 0.0021683 700 11 1 20 [+] picture button

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Download table: GFF TXT
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