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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Rattus norvegicus and rno-miR-99a

888 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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Prss15 ENSRNOT00000059542 protease, serine, 15 (Prss15), mRNA [Source:RefSeq_dna;Acc:NM_133404]
14.5067 -15.36 0.000000501791 700 18 1 36 [+] picture button
Map3k3_predicted ENSRNOT00000055126 NOT ANNOTATED
16.2638 -21.83 0.000001 700 13 1 14 [+] picture button
Qtrt1 ENSRNOT00000010030 queuine tRNA-ribosyltransferase 1 [Source:RefSeq_peptide;Acc:NP_071586]
15.2516 -17.81 0.000001 362 18 2 49 [+] picture button
Hs3st2 ENSRNOT00000023773 Heparan sulfate glucosamine 3-O-sulfotransferase 2 (EC 2.8.2.29) (Heparan sulfate D-glucosaminyl 3-O-sulfotransferase 2) (Heparan sulfate 3-O-sulfotransferase 2). [Source:Uniprot/SWISSPROT;Acc:Q80W66]
15.7836 -16.58 0.00000139874 737 14 6 22 [+] picture button
1110032F04Rik ENSRNOT00000012982 RIKEN cDNA 1110032F04 gene [Source:MarkerSymbol;Acc:MGI:1915975]
17.8514 -31.89 0.00000259047 123 6 5 32 [+] picture button
RGD1309529_predicted ENSRNOT00000000749 Zinc finger CDGSH domain-containing protein 1. [Source:Uniprot/SWISSPROT;Acc:Q9NZ45]Zinc finger CDGSH domain-containing protein 1. [Source:Uniprot/SWISSPROT;Acc:Q9NZ45] BY ORTHOLOGY TO:ENSPTRT00000004707
15.4368 -16.03 0.0000052674 325 18 7 51 [+] picture button
Frap1 ENSRNOT00000014167 FKBP12-rapamycin complex-associated protein (FK506-binding protein 12- rapamycin complex-associated protein 1) (Rapamycin target protein) (RAPT1) (Mammalian target of rapamycin) (mTOR). [Source:Uniprot/SWISSPROT;Acc:P42346]
15.368 -14.91 0.00000633912 841 15 8 23 [+] picture button
Lrrc3 ENSRNOT00000001632 Leucine-rich repeat-containing protein 3 precursor. [Source:Uniprot/SWISSPROT;Acc:P59035]
15.5567 -18.81 0.00000864742 700 22 2 36 [+] picture button
Gfer ENSRNOT00000017917 Augmenter of liver regeneration. [Source:Uniprot/SWISSPROT;Acc:Q63042]
14.475 -22.32 0.0000109812 547 22 2 35 [+] picture button
Atp6v0b_predicted ENSRNOT00000026704 vacuolar ATP synthase proteolipid subunitvacuolar ATP synthase proteolipid subunit BY ORTHOLOGY TO:AAEL012113-RA
14.7814 -9.57 0.0000197991 286 19 7 61 [+] picture button
Ust_predicted ENSRNOT00000022003 Uronyl 2-sulfotransferase (EC 2.8.2.-). [Source:Uniprot/SWISSPROT;Acc:Q9Y2C2]Uronyl 2-sulfotransferase (EC 2.8.2.-). [Source:Uniprot/SWISSPROT;Acc:Q9Y2C2] BY ORTHOLOGY TO:ENST00000367463
15.0088 -18.78 0.0000220143 121 4 6 15 [+] picture button
LOC681389 ENSRNOT00000056600 conserved hypothetical proteinconserved hypothetical protein BY ORTHOLOGY TO:AAEL001314-RA
14.654 -19.08 0.0000258237 700 18 2 40 [+] picture button
LOC691937 ENSRNOT00000020130 Stereocilin (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q4G3Z3]Stereocilin (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q4G3Z3] BY ORTHOLOGY TO:ENSMMUT00000030730
15.1329 -18.21 0.0000276129 700 19 3 37 [+] picture button
Nme3 ENSRNOT00000021650 non-metastatic cell expressed protein 3 [Source:RefSeq_peptide;Acc:NP_445959]
14.4403 -14.74 0.0000326251 134 7 4 37 [+] picture button
Pmm1 ENSRNOT00000007164 phosphomannomutase 1 [Source:RefSeq_peptide;Acc:NP_001008324]
15.9634 -25.93 0.0000478665 376 19 5 45 [+] picture button
Insig2 ENSRNOT00000003391 Insulin-induced gene 2 protein (INSIG-2). [Source:Uniprot/SWISSPROT;Acc:Q80UA9]
14.9421 -17.07 0.0000523715 1609 7 3 7 [+] picture button
Golga5 ENSRNOT00000010385 Golgin subfamily A member 5 (Golgin-84). [Source:Uniprot/SWISSPROT;Acc:Q3ZU82]
14.6697 -15.27 0.000055893 700 14 8 20 [+] picture button
RGD1563235_predicted ENSRNOT00000023911 LOC402912 protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q6P3G4]LOC402912 protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q6P3G4] BY ORTHOLOGY TO:ENSDART00000058628
15.1523 -12.87 0.0000628052 468 17 5 30 [+] picture button
Dus2l_predicted ENSRNOT00000026827 dihydrouridine synthase 2-like (SMM1, S. cerevisiae) [Source:MarkerSymbol;Acc:MGI:1913619]dihydrouridine synthase 2-like (SMM1, S. cerevisiae) [Source:MarkerSymbol;Acc:MGI:1913619] BY ORTHOLOGY TO:ENSMUST00000034375
16.1583 -15.95 0.0000707415 317 17 7 65 [+] picture button
Fntb ENSRNOT00000010588 Protein farnesyltransferase subunit beta (EC 2.5.1.58) (CAAX farnesyltransferase subunit beta) (RAS proteins prenyltransferase beta) (FTase-beta). [Source:Uniprot/SWISSPROT;Acc:Q02293]
15.4826 -28.08 0.0000717258 1229 14 3 15 [+] picture button
Zfp423 ENSRNOT00000020028 zinc finger protein 423 [Source:MarkerSymbol;Acc:MGI:1891217]
14.2085 -17.5 0.0000733989 700 17 2 29 [+] picture button
Wdr32_predicted ENSRNOT00000016384 WD repeat domain 32 [Source:RefSeq_peptide;Acc:NP_077321]WD repeat domain 32 [Source:RefSeq_peptide;Acc:NP_077321] BY ORTHOLOGY TO:ENSORLT00000022734
14.5591 -20.12 0.0000734402 838 18 6 26 [+] picture button
LOC498330 ENSRNOT00000052192 Uncharacterized protein C4orf36 homolog. [Source:Uniprot/SWISSPROT;Acc:Q6AY31]
14.8577 -20.62 0.0000764994 810 13 4 18 [+] picture button
RGD1311126_predicted ENSRNOT00000013459 Uncharacterized protein C1orf34 (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q6PIU8]Uncharacterized protein C1orf34 (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q6PIU8] BY ORTHOLOGY TO:ENSGALT00000017155
15.4628 -13.83 0.0000770871 530 18 6 39 [+] picture button
LOC681802 ENSRNOT00000060565 selenoprotein X 1 [Source:RefSeq_peptide;Acc:NP_001037750]
14.6969 -22.11 0.0000811984 700 19 1 30 [+] picture button
Wnt3a_predicted ENSRNOT00000058336 wingless-related MMTV integration site 3A [Source:MarkerSymbol;Acc:MGI:98956]wingless-related MMTV integration site 3A [Source:MarkerSymbol;Acc:MGI:98956] BY ORTHOLOGY TO:ENSMUST00000010044
16.0753 -20.73 0.0000822523 700 19 2 24 [+] picture button
RGD1564451_predicted ENSRNOT00000005774 Tribbles homolog 2 (TRB-2). [Source:Uniprot/SWISSPROT;Acc:Q28283]Tribbles homolog 2 (TRB-2). [Source:Uniprot/SWISSPROT;Acc:Q28283] BY ORTHOLOGY TO:ENSCAFT00000005845
14.2114 -14.03 0.0000846104 1881 4 6 4 [+] picture button
Cdc37l1 ENSRNOT00000016000 cell division cycle 37 homolog (S. cerevisiae)-like 1 [Source:RefSeq_peptide;Acc:NP_001011941]
14.677 -12.76 0.0000876203 506 16 9 43 [+] picture button
Iqcg ENSRNOT00000032518 IQ domain-containing protein G. [Source:Uniprot/SWISSPROT;Acc:Q5PQQ6]
15.6605 -21.79 0.0000904045 700 14 2 20 [+] picture button
Smarca5_predicted ENSRNOT00000024568 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 (EC 3.6.1.-) (SWI/SNF-related matrix- associated actin-dependent regulator of chromatin A5) (Sucrose nonfermenting protein 2 homolog) (hSNF2H). [Source:Uniprot/SWISSPROT;Acc:O60264]SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 (EC 3.6.1.-) (SWI/SNF-related matrix- associated actin-dependent regulator of chromatin A5) (Sucrose nonfermenting protein 2 homolog) (hSNF2H). [Source:Uniprot/SWISSPROT;Acc:O60264] BY ORTHOLOGY TO:ENSMMUT00000001198
15.2761 -15.33 0.0000946576 1128 5 8 6 [+] picture button
Lama5 ENSRNOT00000008981 Laminin chain (Fragment). [Source:Uniprot/SPTREMBL;Acc:P70636]
14.2085 -17.97 0.000100681 700 12 3 14 [+] picture button
Mvd ENSRNOT00000018145 Diphosphomevalonate decarboxylase (EC 4.1.1.33) (Mevalonate pyrophosphate decarboxylase) (Mevalonate (diphospho)decarboxylase). [Source:Uniprot/SWISSPROT;Acc:Q62967]
14.5353 -23.44 0.000103506 441 18 4 41 [+] picture button
RGD1310048_predicted ENSRNOT00000017820 MGC20983 protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q96CG5]MGC20983 protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q96CG5] BY ORTHOLOGY TO:ENSGACT00000025349
16.0753 -18.9 0.000119859 700 17 4 25 [+] picture button
Card9 ENSRNOT00000025456 Caspase recruitment domain-containing protein 9 (rCARD9). [Source:Uniprot/SWISSPROT;Acc:Q9EPY0]
17.1692 -21.65 0.000125057 129 7 4 34 [+] picture button
Fgfbp1 ENSRNOT00000004128 Fibroblast growth factor-binding protein 1 precursor (FGF-binding protein 1) (FGF-BP1) (FGFBP-1) (FGF-BP) (Growth factor-binding protein 1). [Source:Uniprot/SWISSPROT;Acc:Q9QY10]
14.4079 -14.02 0.000134528 357 16 5 40 [+] picture button
Rspo4 ENSRNOT00000055445 R-spondin family, member 4 [Source:MarkerSymbol;Acc:MGI:1924467]
14.3122 -17.86 0.00014201 700 13 1 16 [+] picture button
1810007M14Rik ENSRNOT00000002800 RIKEN cDNA 1810007M14 gene [Source:MarkerSymbol;Acc:MGI:1914617]
14.8892 -17.68 0.000148075 700 21 6 31 [+] picture button
Cdc37 ENSRNOT00000042314 Hsp90 co-chaperone Cdc37 (Hsp90 chaperone protein kinase-targeting subunit) (p50Cdc37). [Source:Uniprot/SWISSPROT;Acc:Q63692]
16.466 -23.21 0.000152762 377 15 3 41 [+] picture button
Mark2 ENSRNOT00000045193 Serine/threonine-protein kinase MARK2 (EC 2.7.11.1) (MAP/microtubule affinity-regulating kinase 2) (ELKL Motif Kinase) (EMK1). [Source:Uniprot/SWISSPROT;Acc:O08679]
15.1162 -29.43 0.000160841 700 16 6 34 [+] picture button
RGD1563595_predicted ENSRNOT00000016846 Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase (EC 3.2.1.113) (ER alpha-1,2-mannosidase) (Mannosidase alpha class 1B member 1) (Man9GlcNAc2-specific-processing alpha-mannosidase). [Source:Uniprot/SWISSPROT;Acc:Q9UKM7]Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase (EC 3.2.1.113) (ER alpha-1,2-mannosidase) (Mannosidase alpha class 1B member 1) (Man9GlcNAc2-specific-processing alpha-mannosidase). [Source:Uniprot/SWISSPROT;Acc:Q9UKM7] BY ORTHOLOGY TO:ENSGACT00000023930
16.3864 -17.33 0.000171919 700 23 3 30 [+] picture button
RGD1307610_predicted ENSRNOT00000033933 Ribonucleoprotein PTB-binding 2 (Protein raver-2). [Source:Uniprot/SWISSPROT;Acc:Q9HCJ3]Ribonucleoprotein PTB-binding 2 (Protein raver-2). [Source:Uniprot/SWISSPROT;Acc:Q9HCJ3] BY ORTHOLOGY TO:ENSMODT00000001519
15.1419 -14.98 0.000174215 700 15 7 22 [+] picture button
Sema3g ENSRNOT00000025656 Semaphorin 3G (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q5CCT7]
16.905 -22.18 0.000175429 700 15 3 19 [+] picture button
Hnrpu ENSRNOT00000044477 heterogeneous nuclear ribonucleoprotein U [Source:RefSeq_peptide;Acc:NP_476480]
15.9069 -20.81 0.000196841 780 17 9 26 [+] picture button
RGD1561512_predicted ENSRNOT00000014277 atonal homolog 8 [Source:RefSeq_peptide;Acc:NP_116216]atonal homolog 8 [Source:RefSeq_peptide;Acc:NP_116216] BY ORTHOLOGY TO:ENSCAFT00000012245
16.179 -21.95 0.000197245 700 20 2 37 [+] picture button
Rasl12_predicted ENSRNOT00000046914 RAS-like, family 12 protein [Source:RefSeq_peptide;Acc:NP_057647]RAS-like, family 12 protein [Source:RefSeq_peptide;Acc:NP_057647] BY ORTHOLOGY TO:ENSORLT00000000788
14.9345 -24.92 0.000205198 700 15 4 23 [+] picture button
Lig3 ENSRNOT00000029555 ligase III, DNA, ATP-dependent [Source:RefSeq_peptide;Acc:NP_001012011]
14.4561 -20.07 0.000209204 450 21 4 40 [+] picture button
Farsla ENSRNOT00000004370 Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) (Phenylalanine--tRNA ligase alpha chain) (PheRS). [Source:Uniprot/SWISSPROT;Acc:Q505J8]
15.3499 -18.21 0.000221906 258 16 7 69 [+] picture button
Rax ENSRNOT00000022784 Retinal homeobox protein Rx (Retina and anterior neural fold homeobox protein). [Source:Uniprot/SWISSPROT;Acc:Q9JLT7]
14.4159 -20.56 0.000226403 700 15 4 26 [+] picture button
Hexdc ENSRNOT00000054924 hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing [Source:MarkerSymbol;Acc:MGI:3605542]
14.8308 -17.76 0.000230175 700 18 3 27 [+] picture button
Slit1 ENSRNOT00000034758 Slit homolog 1 protein precursor (Slit-1) (Multiple epidermal growth factor-like domains 4). [Source:Uniprot/SWISSPROT;Acc:O88279]
14.554 -10.87 0.000248578 195 11 7 51 [+] picture button

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Download table: GFF TXT
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