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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Rattus norvegicus and rno-miR-9*

679 hits found.


Page 1 of 14
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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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Dpysl3 ENSRNOT00000025880 Dihydropyrimidinase-related protein 3 (DRP-3) (Collapsin response mediator protein 4) (CRMP-4) (TUC-4b) (TOAD-64/Ulip/CRMP). [Source:Uniprot/SWISSPROT;Acc:Q62952]
17.9421 -15.35 1.93962e-06 700 19 7 36 [+] picture button
Cetn3 ENSRNOT00000021735 Centrosomal protein centrin 3 (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q91ZZ8]
16.8788 -8.45 2.89375e-06 349 18 8 43 [+] picture button
LOC684054 ENSRNOT00000007993 leucine rich repeat transmembrane neuronal 1 [Source:MarkerSymbol;Acc:MGI:2389173]leucine rich repeat transmembrane neuronal 1 [Source:MarkerSymbol;Acc:MGI:2389173] BY ORTHOLOGY TO:ENSMUST00000020400
16.4517 -13.96 5.78593e-06 700 19 10 31 [+] picture button
Rnase6 ENSRNOT00000033739 ribonuclease, RNase A family, 6 [Source:RefSeq_peptide;Acc:NP_996538]
18.0085 -13.5 1.03963e-05 700 16 4 24 [+] picture button
Ndnl2 ENSRNOT00000022069 Ndnl2 protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q4KM72]
17.8251 -15.95 1.12398e-05 414 16 7 34 [+] picture button
Ppp6c ENSRNOT00000021176 Serine/threonine-protein phosphatase 6 (EC 3.1.3.16) (PP6) (Protein phosphatase V) (PP-V). [Source:Uniprot/SWISSPROT;Acc:Q64620]
16.0796 -13.06 1.71708e-05 838 13 7 24 [+] picture button
Nfatc3_predicted ENSRNOT00000025402 Nuclear factor of activated T-cells, cytoplasmic 3 (NF-ATc3) (NFATc3) (T cell transcription factor NFAT4) (NF-AT4) (NFATx). [Source:Uniprot/SWISSPROT;Acc:Q12968]Nuclear factor of activated T-cells, cytoplasmic 3 (NF-ATc3) (NFATc3) (T cell transcription factor NFAT4) (NF-AT4) (NFATx). [Source:Uniprot/SWISSPROT;Acc:Q12968] BY ORTHOLOGY TO:ENST00000346183
15.691 -12.66 2.03405e-05 245 12 8 34 [+] picture button
RGD1565672_predicted ENSRNOT00000005887 Mdm2, transformed 3T3 cell double minute 2, p53 binding protein binding protein [Source:RefSeq_peptide;Acc:NP_071328]Mdm2, transformed 3T3 cell double minute 2, p53 binding protein binding protein [Source:RefSeq_peptide;Acc:NP_071328] BY ORTHOLOGY TO:ENSGALT00000026454
16.2596 -8.91 2.3333e-05 250 11 3 26 [+] picture button
1700010C24Rik ENSRNOT00000006966 RIKEN cDNA 1700010C24 gene [Source:MarkerSymbol;Acc:MGI:1917613]
16.1257 -9.33 4.97091e-05 700 13 1 17 [+] picture button
Nol5 ENSRNOT00000022676 Nucleolar protein 5 (Nucleolar protein NOP5) (Nopp140-associated protein of 65 kDa). [Source:Uniprot/SWISSPROT;Acc:Q9QZ86]
18.8747 -16.66 7.96841e-05 188 10 7 29 [+] picture button
RGD1305692 ENSRNOT00000009155 Nuclear protein Hcc-1. [Source:Uniprot/SWISSPROT;Acc:Q498U4]
16.6007 -15.51 0.0001059 331 10 5 26 [+] picture button
Mta1 ENSRNOT00000044851 Metastasis-associated protein MTA1. [Source:Uniprot/SWISSPROT;Acc:Q62599]
16.4625 -11.47 0.000124302 533 17 4 35 [+] picture button
Clk1 ENSRNOT00000030934 Dual specificity protein kinase CLK1 (EC 2.7.12.1) (CDC-like kinase 1). [Source:Uniprot/SWISSPROT;Acc:P49759]Dual specificity protein kinase CLK1 (EC 2.7.12.1) (CDC-like kinase 1). [Source:Uniprot/SWISSPROT;Acc:P49759] BY ORTHOLOGY TO:ENST00000321356
16.3864 -10.82 0.00012834 700 14 6 25 [+] picture button
Itgb1 ENSRNOT00000014785 Integrin beta-1 precursor (Fibronectin receptor subunit beta) (Integrin VLA-4 subunit beta) (CD29 antigen). [Source:Uniprot/SWISSPROT;Acc:P49134]
15.5068 -8.72 0.000149614 700 14 4 21 [+] picture button
Tpd52_predicted ENSRNOT00000059273 Tumor protein D52 (N8 protein). [Source:Uniprot/SWISSPROT;Acc:P55327]Tumor protein D52 (N8 protein). [Source:Uniprot/SWISSPROT;Acc:P55327] BY ORTHOLOGY TO:ENSMODT00000008369
17.047 -15.06 0.000180612 700 15 7 21 [+] picture button
RGD1306148_predicted ENSRNOT00000019802 Proteasome-associated protein ECM29 homolog (Ecm29). [Source:Uniprot/SWISSPROT;Acc:Q5VYK3]Proteasome-associated protein ECM29 homolog (Ecm29). [Source:Uniprot/SWISSPROT;Acc:Q5VYK3] BY ORTHOLOGY TO:ENST00000338205
16.6212 -12.21 0.000186109 700 17 6 20 [+] picture button
LOC500726 ENSRNOT00000030246 KIAA0284 (KIAA0284), mRNA [Source:RefSeq_dna;Acc:NM_015005]KIAA0284 (KIAA0284), mRNA [Source:RefSeq_dna;Acc:NM_015005] BY ORTHOLOGY TO:ENSBTAT00000006305
17.0087 -13.24 0.000187055 700 14 4 18 [+] picture button
Slc26a7_predicted ENSRNOT00000008474 solute carrier family 26, member 7 isoform a [Source:RefSeq_peptide;Acc:NP_439897]solute carrier family 26, member 7 isoform a [Source:RefSeq_peptide;Acc:NP_439897] BY ORTHOLOGY TO:ENST00000309536
17.2829 -9.1 0.000189848 265 13 5 43 [+] picture button
Cask ENSRNOT00000004187 Peripheral plasma membrane protein CASK (EC 2.7.11.1) (Calcium/calmodulin-dependent serine protein kinase). [Source:Uniprot/SWISSPROT;Acc:Q62915]
16.1814 -17.99 0.000227174 732 20 11 29 [+] picture button
Actl6a ENSRNOT00000015460 actin-like 6A [Source:RefSeq_peptide;Acc:NP_001034122]
15.5567 -9.7 0.000253102 700 19 8 31 [+] picture button
Etnk1_predicted ENSRNOT00000020042 Ethanolamine kinase 1 (EC 2.7.1.82) (EKI 1). [Source:Uniprot/SWISSPROT;Acc:Q9HBU6]Ethanolamine kinase 1 (EC 2.7.1.82) (EKI 1). [Source:Uniprot/SWISSPROT;Acc:Q9HBU6] BY ORTHOLOGY TO:ENSMMUT00000009297
16.5939 -21.3 0.000285178 700 9 4 11 [+] picture button
LOC682680 ENSRNOT00000061421 NOT ANNOTATED
16.0124 -9.72 0.000293083 700 14 2 21 [+] picture button
LOC682624 ENSRNOT00000039512 deleted in azoospermia-like [Source:MarkerSymbol;Acc:MGI:1342328]deleted in azoospermia-like [Source:MarkerSymbol;Acc:MGI:1342328] BY ORTHOLOGY TO:ENSMUST00000010736
17.2093 -11.19 0.000300135 700 14 5 20 [+] picture button
Rsbn1l_predicted ENSRNOT00000046142 round spermatid basic protein 1-like [Source:RefSeq_peptide;Acc:NP_940869]round spermatid basic protein 1-like [Source:RefSeq_peptide;Acc:NP_940869] BY ORTHOLOGY TO:SINFRUT00000162420
17.5467 -12.92 0.000331183 492 16 7 45 [+] picture button
Asz1 ENSRNOT00000010916 ankyrin repeat, SAM and basic leucine zipper domain containing 1 [Source:RefSeq_peptide;Acc:NP_570106]
17.3966 -9.91 0.000353735 278 14 5 42 [+] picture button
Olr1251_predicted ENSRNOT00000047748 olfactory receptor Olr1251 [Source:RefSeq_peptide;Acc:NP_001000453]
17.0863 -8.91 0.000372823 700 9 1 8 [+] picture button
LOC688000 ENSRNOT00000045719 Ubiquitin-conjugating enzyme E2 variant 3 (UEV-3) (EV and lactate/malate dehydrogenase domain-containing protein). [Source:Uniprot/SWISSPROT;Acc:Q8IX04]Ubiquitin-conjugating enzyme E2 variant 3 (UEV-3) (EV and lactate/malate dehydrogenase domain-containing protein). [Source:Uniprot/SWISSPROT;Acc:Q8IX04] BY ORTHOLOGY TO:ENSGALT00000010251
17.0087 -13.5 0.000411857 700 17 3 29 [+] picture button
RGD1303074 ENSRNOT00000026120 Edem2 protein [Source:RefSeq_peptide;Acc:NP_001004230]
17.7377 -11.57 0.000428396 81 2 3 3 [+] picture button
Homer2 ENSRNOT00000055606 Homer protein homolog 2 (Homer-2) (Cupidin) (VASP/Ena-related gene up- regulated during seizure and LTP 2) (Vesl-2). [Source:Uniprot/SWISSPROT;Acc:O88801]
16.5223 -16.62 0.000431483 700 21 6 32 [+] picture button
Galnt13 ENSRNOT00000007108 Polypeptide N-acetylgalactosaminyltransferase 13 (EC 2.4.1.41) (Protein-UDP acetylgalactosaminyltransferase 13) (UDP- GalNAc:polypeptide N-acetylgalactosaminyltransferase 13) (Polypeptide GalNAc transferase 13) (GalNAc-T13) (pp-GaNTase 13). [Source:Uniprot/SWISSPROT;Acc:Q6UE39]
17.4447 -10.99 0.000541967 421 14 7 29 [+] picture button
Mdk ENSRNOT00000033978 midkine (Mdk), mRNA [Source:RefSeq_dna;Acc:NM_030859]
16.0322 -15.15 0.000564584 274 14 5 42 [+] picture button
Hebp2_predicted ENSRNOT00000015225 Heme-binding protein 2 (Protein SOUL) (Placental protein 23) (PP23). [Source:Uniprot/SWISSPROT;Acc:Q9Y5Z4]Heme-binding protein 2 (Protein SOUL) (Placental protein 23) (PP23). [Source:Uniprot/SWISSPROT;Acc:Q9Y5Z4] BY ORTHOLOGY TO:ENSORLT00000017310
17.9651 -10.3 0.000605635 203 11 6 37 [+] picture button
RGD1563940_predicted ENSRNOT00000013528 hypothetical protein LOC492502 [Source:RefSeq_peptide;Acc:NP_001007375]hypothetical protein LOC492502 [Source:RefSeq_peptide;Acc:NP_001007375] BY ORTHOLOGY TO:ENSDART00000059623
15.5773 -8.47 0.000608664 140 6 7 19 [+] picture button
Kcns3 ENSRNOT00000006499 Potassium voltage-gated channel subfamily S member 3 (Voltage-gated potassium channel subunit Kv9.3) (Delayed-rectifier K(+) channel alpha subunit 3). [Source:Uniprot/SWISSPROT;Acc:O88759]
18.4363 -13.6 0.000625 485 14 9 27 [+] picture button
Wig1 ENSRNOT00000013858 wild-type p53-induced gene 1 [Source:RefSeq_peptide;Acc:NP_071993]
16.5939 -14.46 0.0006538 700 14 4 23 [+] picture button
Zcchc8_predicted ENSRNOT00000001668 Zinc finger CCHC domain-containing protein 8. [Source:Uniprot/SWISSPROT;Acc:Q6NZY4]Zinc finger CCHC domain-containing protein 8. [Source:Uniprot/SWISSPROT;Acc:Q6NZY4] BY ORTHOLOGY TO:ENSGACT00000010824
16.0682 -11.36 0.000701481 524 19 5 32 [+] picture button
CBPA3_RAT ENSRNOT00000014970 Mast cell carboxypeptidase A precursor (EC 3.4.17.1) (RMC-CP) (Carboxypeptidase A3) (R-CPA) (Fragment). [Source:Uniprot/SWISSPROT;Acc:P21961]
16.3733 -6.32 0.000724896 178 4 5 13 [+] picture button
Dmp1 ENSRNOT00000002940 Dentin matrix acidic phosphoprotein 1 precursor (Dentin matrix protein 1) (DMP-1) (AG1). [Source:Uniprot/SWISSPROT;Acc:P98193]
15.9789 -10.06 0.000753772 1143 9 4 9 [+] picture button
Zbtb39_predicted ENSRNOT00000005685 zinc finger and BTB domain containing 39 [Source:MarkerSymbol;Acc:MGI:2443316]zinc finger and BTB domain containing 39 [Source:MarkerSymbol;Acc:MGI:2443316] BY ORTHOLOGY TO:ENSMUST00000054287
15.8679 -18.67 0.000798264 700 16 3 25 [+] picture button
Rev1l_predicted ENSRNOT00000025243 terminal deoxycytidyl transferase rev1terminal deoxycytidyl transferase rev1 BY ORTHOLOGY TO:AAEL002250-RA
17.4522 -11.61 0.000888049 700 19 8 30 [+] picture button
Cnot3_predicted ENSRNOT00000018017 lethal (2) NC136 CG8426-PA [Source:RefSeq_peptide;Acc:NP_610176]lethal (2) NC136 CG8426-PA [Source:RefSeq_peptide;Acc:NP_610176] BY ORTHOLOGY TO:CG8426-RA
17.8514 -8.85 0.000889795 274 11 6 34 [+] picture button
Mynn ENSRNOT00000058909 myoneurin [Source:RefSeq_peptide;Acc:NP_001012178]
16.1454 -11.87 0.000947362 654 17 5 26 [+] picture button
RGD1565310_predicted ENSRNOT00000022345 coiled-coil domain containing 128 [Source:MarkerSymbol;Acc:MGI:1921075]coiled-coil domain containing 128 [Source:MarkerSymbol;Acc:MGI:1921075] BY ORTHOLOGY TO:ENSMUST00000038551
15.7078 -9.23 0.00103509 700 16 2 21 [+] picture button
Ran ENSRNOT00000001247 GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4). [Source:Uniprot/SWISSPROT;Acc:P62828]
17.4773 -13.86 0.00103643 342 15 7 39 [+] picture button
Gabpb2 ENSRNOT00000028661 GA repeat binding protein, beta 2 [Source:MarkerSymbol;Acc:MGI:95612]
16.5173 -10.61 0.00103882 700 15 4 24 [+] picture button
LOC679869 ENSRNOT00000047127 Transcription factor 7-like 2 (HMG box transcription factor 4) (T- cell-specific transcription factor 4) (TCF-4) (hTCF-4). [Source:Uniprot/SWISSPROT;Acc:Q9NQB0]Transcription factor 7-like 2 (HMG box transcription factor 4) (T- cell-specific transcription factor 4) (TCF-4) (hTCF-4). [Source:Uniprot/SWISSPROT;Acc:Q9NQB0] BY ORTHOLOGY TO:ENSMMUT00000032082
16.205 -14.68 0.00104499 700 20 10 26 [+] picture button
Ppm1b ENSRNOT00000047792 Protein phosphatase 1B (EC 3.1.3.16) (Protein phosphatase 2C isoform beta) (PP2C-beta). [Source:Uniprot/SWISSPROT;Acc:P35815]
15.6605 -7.09 0.00110528 700 19 7 25 [+] picture button
Plagl1 ENSRNOT00000030329 pleiomorphic adenoma gene-like 1 [Source:RefSeq_peptide;Acc:NP_036892]
16.7428 -12.71 0.00114792 700 17 5 23 [+] picture button
ENSRNOT00000043493 NOT ANNOTATED
16.8013 -10.84 0.00114802 700 10 1 8 [+] picture button
Rcn2 ENSRNOT00000021817 Reticulocalbin-2 precursor (Calcium-binding protein ERC-55) (Taipoxin- associated calcium-binding protein 49) (TCBP-49). [Source:Uniprot/SWISSPROT;Acc:Q62703]
16.2816 -13.16 0.00115129 834 17 9 20 [+] picture button

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Download table: GFF TXT
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